KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:35 2014 Check: 00 .. Name: ENSP00000252463/1-725 Len: 797 Check: 3025 Weight: 1.00 Name: ENSBTAP00000037357/1-730 Len: 797 Check: 7455 Weight: 1.00 Name: ENSTTRP00000003808/1-728 Len: 797 Check: 3875 Weight: 1.00 Name: bmy_02752T0/1-795 Len: 797 Check: 8597 Weight: 1.00 Name: BACU009178/1-649 Len: 797 Check: 2120 Weight: 1.00 // 1 50 ENSP00000252463/1-725 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037357/1-730 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003808/1-728 ---------- ---------- ---------- ---------- ---------- bmy_02752T0/1-795 MLAEPGPAAW EPEQLGAVKL EEEEAAGQED PRRPEARPRP EVAHQLFRCF BACU009178/1-649 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000252463/1-725 -----MGPRA SLSRLRELCG HWLRPALHTK KQILELLVLE QFLSVLPPHL ENSBTAP00000037357/1-730 -----MGPRA SLSRLRELCN HWLRPALHTK KQILELLVLE QFLSVLPPHL ENSTTRP00000003808/1-728 -----MGPRA SLSRLRELCS HWLRPALHTK KQILELLVLE QFLSVLPPHL bmy_02752T0/1-795 QYQEDMGPRA SLSRLRELCS HWLRPALHTK KQILELLVLE QFLSVLPPHL BACU009178/1-649 -----MEPV- ---------- ---------- ---------- ---------- 101 150 ENSP00000252463/1-725 LGRLQGQPLR DGEEVVLLLE GIHREPSHAG PLDFSCNAGK SCPRADVTLE ENSBTAP00000037357/1-730 LARLQGQQLR DGEEVVLLLE GVQRESSNVG PLDFSFNAGK NCPRADVTLE ENSTTRP00000003808/1-728 LARLQGQQLR DGEEVVLLLE GVQRESSNVG PLDFSFNAGK NCPRAEVTLE bmy_02752T0/1-795 LARLQGQQLR DGEEVVLLLE GVQRESSNVG PLDFSFNAGK NCPRAEVTLE BACU009178/1-649 ---------- ---------- ---------- ---------- --PSVEVTLE 151 200 ENSP00000252463/1-725 EKGCASQVPS HSPKKELPAE EPSVLGPSDE PPRPQPRAAQ PAEPGQWRLP ENSBTAP00000037357/1-730 EQGGSFQVSS HSPKKEAASE GPPALEPSQA LPPSQSGPSK PAEMGDWRRP ENSTTRP00000003808/1-728 EQGGSFQVSS HSPKKEVPSE GPPALEPSQE LSLSQPVPSK PAEMGAWRCP bmy_02752T0/1-795 EQGGSSQVSS HSPKKEVPSE GPPALEPSQE LSPSQPVPSK PAEMGAWRCP BACU009178/1-649 EQGGSSQVSS HSPKKEVPSE GPPALEPSQE LSLSQPVPSK PAEMGAWRCP 201 250 ENSP00000252463/1-725 PSSKQPLSPG PQKTFQALQE S--------- --SPQGPSPW PEESSRDQEL ENSBTAP00000037357/1-730 LSSRQPLSPG PKRTLQAPQE S--------- --ALQGPELW PEESSGDQEL ENSTTRP00000003808/1-728 PSSKQPLSPG PKRTLQAPQE S--------- --APLGPELW PEENSGDQEL bmy_02752T0/1-795 PSSKQPLSPG PKRTLQATQE SGEDLGPKEV LSAPQGPELW PEENSGDQEL BACU009178/1-649 PSSKQPLSPG PRRTLQATQE S--------V LSAPQGPELW PEENSGDQEL 251 300 ENSP00000252463/1-725 AAVLECLTFE DVPENKAWPA HPLGFGSRTP DKEEFKQEEP KGAAWPTPIL ENSBTAP00000037357/1-730 AAVLESLTFE DVPAKKAWPV HPLGTGGRTL E-EAFKAEEP KGVSWPSAAS ENSTTRP00000003808/1-728 AAVLESLTFE DVPAKKAWPV HPLGFGGRTP D-EAFKEEEP KEVSWPAAIS bmy_02752T0/1-795 AAVLESLTFE DVPAKKAWPV HPLGFGGRTP D-EGFKEEEP KGVSWPAAIS BACU009178/1-649 AAVLESLTFE DVPAKKAWPV HPLGFGGRTP D-EAFKEEEP KGVSWPAAIS 301 350 ENSP00000252463/1-725 AESQADSPGV PGEPCAQSLG RGAAASGPGE DGSLLGSSEI LEVKVAEGVP ENSBTAP00000037357/1-730 ANSQAESPRV AEEPHAQSLG SGPETSSPGG EMSPPGRSDV LKVKAAEDAP ENSTTRP00000003808/1-728 AKSHAESPTV AKQPHTQSLG PGPEVGGPGG -MSPPDRSEV LEVKVAGGAP bmy_02752T0/1-795 AKSQAESPRV AEEPHTQSLC PGPEVGGPGG EMSPPDRSEV LEVKVAGGAP BACU009178/1-649 AKSQGESPRV AEEPHTQSLC PGPEVGGPGG EMSPPDRSEV LEVKVAGGAP 351 400 ENSP00000252463/1-725 EPNPELQFIC ADCGVSFPQL SRLKAHQLRS HPAGRSFLCL CCGKSFGRSS ENSBTAP00000037357/1-730 KSDPEFKFIC TDCGISFPQL ARLEAHQLRS HPGARSFLCL CCGKAFGRSS ENSTTRP00000003808/1-728 KSEPDIKFIC TDCGVSFPQL ARLETHQLRS HPGARSFLCL CCGKSFGRSS bmy_02752T0/1-795 KSEPEIKFIC TDCGVSFPQL ARLETHQLRS HPGARSFLCL CCGKSFGRSS BACU009178/1-649 KSEPEIKFIC TDCGVSFPQL ARLETHQLRS HPGARSFLCL CCGKSFGRSS 401 450 ENSP00000252463/1-725 ILKLHMRTHT DERPHACHLC GHRFRQSSHL SKHLLTHSSE PAFLCAECGR ENSBTAP00000037357/1-730 ILKLHMRTHT DERPHTCHLC GHRFRQSSHL NKHLQTHSSE PAFLCAECGQ ENSTTRP00000003808/1-728 ILKLHMRTHT DERPHTCHLC GHRFRQSSHL SKHMQTHSSE PAFLCAECGQ bmy_02752T0/1-795 ILKLHMRTHT DERPHTCHLC GHRFRQSSHL SKHLQTHSSE PAFLCAECGQ BACU009178/1-649 ILKLHMRTHT DERPHTCHLC GHRFRQSSHL SKHLQTHSSE PAFLCAECGQ 451 500 ENSP00000252463/1-725 GFQRRASLVQ HLLAHAQDQK PP-CAPESKA EAPP-LTDVL CSHCGQSFQR ENSBTAP00000037357/1-730 GFQRRARLTQ HLLAHAQDQK PPGGTPETKP PAPPELTVVL CSHCGQTFQR ENSTTRP00000003808/1-728 GFQRRARLMQ HLLAHAQDQK PP-GAPETKT PAPPELAIVL CSHCGQTFQR bmy_02752T0/1-795 GFQRRARLMQ HLLAHAQDQK PP-GAPETKT PAPPELAIVL CSHCGQTFQR BACU009178/1-649 GFQRRARLMQ HLLAHAQDQK PP-GAPETKT PAPPDLAIVL CSHCGQTFQR 501 550 ENSP00000252463/1-725 RSSLKRHLRI HARDKDRRSS EGSGSRRRDS DRRPFVCSDC GKAFRRSEHL ENSBTAP00000037357/1-730 RSSLKRHLRI HAKDKGHQCS ECSGSLRPGP ERRPYVCGEC GKAFRRSEHL ENSTTRP00000003808/1-728 RSSLKRHLRI HAKDQGHQCS ECSGSLRPGP ELRPYVCGDC GKAFRRSEHL bmy_02752T0/1-795 RSSLKRHLRI HAKDQGHQCS ECSGSLRPGP ELRPYVCGDC GKAFRRSEHL BACU009178/1-649 RSSLKRHLRI HAKDQGHQCS ECSGSLRPGP ELRPYVCGDC GKAFRRSEHL 551 600 ENSP00000252463/1-725 VAHRRVHTGE RPFSCQACGR SFTQSSQLVS HQRVHTGEKP YACPQCGKRF ENSBTAP00000037357/1-730 GAHWRVHTGE RPFSCQVCGR SFSQSSQLVC HQRVHTGEKP YGCPHCGKRF ENSTTRP00000003808/1-728 GAHRRVHTGE RPFSCQVCGR SFSQSSQLVC HQRVHTGEKP YSCPHCGKRF bmy_02752T0/1-795 GAHRRVHTGE RPFSCQVCGR SFSQSSQLVC HQRVHTGEKP YSCPHCGKRF BACU009178/1-649 GAHRRVHTGE RPFSCQVCGR SFSQSSQLVC HQRVHTGEKP YSCPHCGKRF 601 650 ENSP00000252463/1-725 VRRASLARHL LTHGGPRPHH CTQCGKSFGQ TQDLARHQRS HTGEKPCRCS ENSBTAP00000037357/1-730 MRRAGLARHL LTHGGPRPHH CTQCGKSFSQ TQDLARHRRS HTGEKPCRCS ENSTTRP00000003808/1-728 MRRAGLARHL LTHGGPRPHH CTQCGKSFSQ TQDLARHRRS HTGEKPCRCS bmy_02752T0/1-795 MRRAGLARHL LTHGGPRPHH CAQCGKSFSQ TQDLARHRRS HTGEKPCRCS BACU009178/1-649 MRRAGLARHL LTHGGPRPHH CAQCGKSFSQ TQDLARHRRS HTGEKPCRCS 651 700 ENSP00000252463/1-725 ECGEGFSQSA HLARHQRIHT GEKPHACDTC GHRFRNSSNL ARHRRSHTGE ENSBTAP00000037357/1-730 ECGEGFSQSA HLARHQRIHT GEKPHVCDTC GHRFRNSSNL ARHRRSHTGE ENSTTRP00000003808/1-728 ECGEGFSQSA HLARHQRIHT GEKPHVCDTC GHRFRNSSNL ARHRRSHTGE bmy_02752T0/1-795 ECGEGFSQSA HLARHQRIHT GEKPHVCDTC GHRFRNSSNL ARHRRSHTGE BACU009178/1-649 ECGEGFSQSA HLARHQRIHT GEKPHVCDTC GHRFRNSSNL ARHRRSHTGE 701 750 ENSP00000252463/1-725 RPYSCQTCGR SFRRNAHLRR HLATHAEPGQ E----QAEPP QECVECGKSF ENSBTAP00000037357/1-730 RPYSCEQCGR SFRRNAHLQR HLATHAGAGD EAASGPAEPP QECPECGKVF ENSTTRP00000003808/1-728 RPYSCQKCGR SFRRNAHLQR HLATHAGAGD EGVSGQAEPP QECLECGKIF bmy_02752T0/1-795 RPYSCQKCGR SFRRNAHLQR HLATHAGAGE EGASGQAETP QECLECGKIF BACU009178/1-649 RPYSCQKCGR SFRRNAHLQR HLATHAGAGD EGASGQAEPP QECLECGKIF 751 800 ENSP00000252463/1-725 SRSCNLLRHL LVHTGARPYS CTQCGRSFSR NSHLLRHLRT HARETLY ENSBTAP00000037357/1-730 SRSCNLLRHM LVHTGARPYS CTQCGRSFSR NSHLLRHLRT HARETLY ENSTTRP00000003808/1-728 SRSCNLLRHM LVHTGARPYS CAQCGRSFSR NSHLLRHLRT HARETLY bmy_02752T0/1-795 SRSCNLLRHM LVHTGARPYS CTQCGRSFSR NSHLLRHLRT HARETLY BACU009178/1-649 SRSCNLLRHM LVHTGARPYS CTQCGRSFSR NSHLLRHLRT HARETLY