KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:47:37 2014 Check: 00 .. Name: ENSTTRP00000000830/1-665 Len: 680 Check: 2560 Weight: 1.00 Name: bmy_14629T0/1-639 Len: 680 Check: 5269 Weight: 1.00 Name: ENSP00000379183/1-677 Len: 680 Check: 226 Weight: 1.00 Name: ENSBTAP00000037438/1-665 Len: 680 Check: 2625 Weight: 1.00 // 1 50 ENSTTRP00000000830/1-665 MHHLLEPSAD METALLAGEK LRELILPGAQ DDKAGALAAL LLQLKLELPF bmy_14629T0/1-639 LTAVREGRGT RGET--HATT LRCAEGGSAR GGREGSDARL APSPLSSLP- ENSP00000379183/1-677 MHHLLEQSAD MATALLAGEK LRELILPGAQ DDKAGALAAL LLQLKLELPF ENSBTAP00000037438/1-665 -HHLLEPSTD MATALLAGEK LRELILPGAQ DDKAGALAAL LLQLKLELPF 51 100 ENSTTRP00000000830/1-665 DRVVTIGTVL VPILLVTLVF TKNFAEEPIY CYTPHNFTRD QALYARGYCW bmy_14629T0/1-639 ---------- ---------- ----PEEPIY CYTPHNFTRD QALYARGYCW ENSP00000379183/1-677 DRVVTIGTVL VPILLVTLVF TKNFAEEPIY CYTPHNFTRD QALYARGYCW ENSBTAP00000037438/1-665 DRVVTIGTVL VPILLVTLVF TKNFAEEPIY CYTPHNFTRD QALYARGYCW 101 150 ENSTTRP00000000830/1-665 TELRDALPGV DASLWPSLFE HKLLPYSLLA FAAIMYVPAL GWEFLASTRL bmy_14629T0/1-639 TELRDALPGV DASLWPSLFE HKLLPYSLLA FAAIMYVPAL GWEFLASTRL ENSP00000379183/1-677 TELRDALPGV DASLWPSLFE HKFLPYALLA FAAIMYVPAL GWEFLASTRL ENSBTAP00000037438/1-665 TELRDALPGV DASLWPSLFE HKLLPYSLLA FAAIMYVPAL GWEFLASTRL 151 200 ENSTTRP00000000830/1-665 TSELNFLLQE IDNCYHRAAE GRAPKIEKQI QSKGPGITER ERREIIENAE bmy_14629T0/1-639 TSELNFLLQE IDNCYHRAAE GRAPKIEKQI QSKGPGITER ERREIIENAE ENSP00000379183/1-677 TSELNFLLQE IDNCYHRAAE GRAPKIEKQI QSKGPGITER EKREIIENAE ENSBTAP00000037438/1-665 TSELNFLLQE IDNCYHRAAE GRAPKIEKQI QSKGPGITER ERREIIENAE 201 250 ENSTTRP00000000830/1-665 KEKSPEQNLF EKYLERRGRS NFLAKLYLAR HLLILLLSVA PISYLCTYYA bmy_14629T0/1-639 KEKSPEQNLF EKYLERRGRS NFLAKLYLAR HLLILLLSVA PISYLCTYYA ENSP00000379183/1-677 KEKSPEQNLF EKYLERRGRS NFLAKLYLAR HVLILLLSAV PISYLCTYYA ENSBTAP00000037438/1-665 KEKSPEQNLF EKYLERRGRS NFLAKLYLAR HLLILLLSVA PISYLCTYYA 251 300 ENSTTRP00000000830/1-665 TQKQNEFTCA LGAAP----- VAPAVRVTCK LPSVQLQRIV AGVDIVLLCS bmy_14629T0/1-639 TQRQNEFTCA LGAAP----G GGPAVRVTCK LPSVQLQRIV AGVDIVLLCS ENSP00000379183/1-677 TQKQNEFTCA LGASPDGAAG AGPAVRVSCK LPSVQLQRII AGVDIVLLCV ENSBTAP00000037438/1-665 TQKQNEFTCA LGAAP----G GGPAVRVTCK LPSVQLQRIV AGVDVVLLCA 301 350 ENSTTRP00000000830/1-665 MNLIILVNLI HLFIFRKSNF IFDKLHKVGI KTRRQWRRSQ FCDINILAMF bmy_14629T0/1-639 MNLTILVNLV HLFIFRKSNF IFDKLHKVGI KTRRQWRRSQ FCDINILAMF ENSP00000379183/1-677 MNLIILVNLI HLFIFRKSNF IFDKLHKVGI KTRRQWRRSQ FCDINILAMF ENSBTAP00000037438/1-665 MNLVILVNLT HLFIFRKSNF VFDKLHKVGI KTRRQWRRSQ FCDINILAMF 351 400 ENSTTRP00000000830/1-665 CNENRDHIKS LNRLDFITNE SDLMYDNVVR QLLAALAQSN HDATPTVRDE bmy_14629T0/1-639 CNENRDHIKS LNRLDFITNE SDLMYDNVVR QLLAALAQSN HDATPTVRDA ENSP00000379183/1-677 CNENRDHIKS LNRLDFITNE SDLMYDNVVR QLLAALAQSN HDATPTVRDS ENSBTAP00000037438/1-665 CNENRDHIKS LNRLDFITNE SDLMYDNVVR QLLAALAQSN HDATPTVRDA 401 450 ENSTTRP00000000830/1-665 GVQTVDPSAN PAEPEGAAEP PVVKRPRKKM KWIPTSNPLP QPFKEPLAIM bmy_14629T0/1-639 AVQTVDPSAN PAEPEGDAEP PVVKRPRKKM KWIPTSNPLP QPFKEPLAIM ENSP00000379183/1-677 GVQTVDPSAN PAEPDGAAEP PVVKRPRKKM KWIPTSNPLP QPFKEPLAIM ENSBTAP00000037438/1-665 GVQTVDPSAN PAEPDGEAEP PVVKRPRKKM KWIPSSNPLP QPFKEPLAIM 451 500 ENSTTRP00000000830/1-665 RVENSKAEKP KPVRRKTATD TLIAPLLDAG ARAAHHYKGG GGDTG----- bmy_14629T0/1-639 RVENSKAEKP KPVRRKTATD TLIAPLLDAG ARAAHHYKGG GGDAG----- ENSP00000379183/1-677 RVENSKAEKP KPARRKTATD TLIAPLLD-- -RSAHHYKGG GGDPGPGPAP ENSBTAP00000037438/1-665 RVENSKAEKP KPVRRKTATD TLIAPLLDAG ARAAHHYKGG GGDAG----- 501 550 ENSTTRP00000000830/1-665 -----PPPDK KHARHFSLDV HPYILGTKKS KAEAMPAALP ASRSQEGGFL bmy_14629T0/1-639 -----PPPDK KHARHFSLDV HPYILGTKKA KAEAMPAALP ASRSQEGGFL ENSP00000379183/1-677 APAPPPAPDK KHARHFSLDV HPYILGTKKA KAEAVPAALP ASRSQEGGFL ENSBTAP00000037438/1-665 -----PAADK KHARHFSLDV HPYILGTKKA KAEALPAALP ASRSQEGGFL 551 600 ENSTTRP00000000830/1-665 SQAEECGLGL TAAPTTXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14629T0/1-639 SQAEECGLGL TAAPTTDAPL PEKEVLFPAE PARAALPSGG PFHVCSPSTA ENSP00000379183/1-677 SQAEDCGLGL APAPIKDAPL PEKEIPYPTE PARAGLPSGG PFHVRSPPAA ENSBTAP00000037438/1-665 SQADECALGL TAAPAADAPL PEEEALYSAE PARGVLPPGG PFHVCSPPAA 601 650 ENSTTRP00000000830/1-665 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14629T0/1-639 PATAPLSPAS LGKPDPLAIL SRNATHPLLH ISTLYEAREE EDGAPRVPPD ENSP00000379183/1-677 PAVAPLTPAS LGKAEPLTIL SRNATHPLLH INTLYEAREE EDGGPRLPQD ENSBTAP00000037438/1-665 PATAPLSPAS LGKPDPLAIL SRNATHPLLH ISTLYEAREE EDGAPRAPQD 651 700 ENSTTRP00000000830/1-665 XXXXXXXXXX XXXXXXXXXX XXTAVSGVEF bmy_14629T0/1-639 VGSLIPIPPP QQILIATFEE PRTAVSTVEF ENSP00000379183/1-677 VGDLIAIPAP QQILIATFDE PRTVVSTVEF ENSBTAP00000037438/1-665 VGSLITIPPP QQILIATFDE PRTVVSTVEF