KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:42 2014 Check: 00 .. Name: bmy_01118T0/1-417 Len: 731 Check: 6971 Weight: 1.00 Name: ENSTTRP00000005306/1-632 Len: 731 Check: 5830 Weight: 1.00 Name: ENSP00000380033/1-731 Len: 731 Check: 1499 Weight: 1.00 Name: BACU013364/1-652 Len: 731 Check: 2860 Weight: 1.00 Name: ENSBTAP00000037506/1-650 Len: 731 Check: 537 Weight: 1.00 // 1 50 bmy_01118T0/1-417 -------MRT CIRISNHSTI VQYLYFKPRM SGSKCKSSGD VAGTAKKCQE ENSTTRP00000005306/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000380033/1-731 LPTGFVAPIL CVLLPSPTRE AATVASATGD SASERESAAP AAAPTAEAPP BACU013364/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037506/1-650 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_01118T0/1-417 LEAQRKDEER QEEEEVTAEP KRFTMQEMAR GFSLFEEYLQ NQLQIRFGAR ENSTTRP00000005306/1-632 ---------- ---------- ---------- ---------- ------FGAR ENSP00000380033/1-731 PSVVTRPEPQ ALPSPAIRAP LPDLYPFGTM RGGGFGDRDR DRDRGGFGAR BACU013364/1-652 ---------- ---------- ---------M RGGGFGDRDR DRDRGGFGAR ENSBTAP00000037506/1-650 ---------- ---------- ---------M RGGGFGDRDR DRDRGGFGAR 101 150 bmy_01118T0/1-417 GGGGLPPKKF GNPGERLRKK KWDLSELPKF EKNFYVEHPE VARLTPYEVD ENSTTRP00000005306/1-632 GGGGLPPKKF GNPGERLRKK KWDLSELPKF EKNFYVEHPE VARLTPYEVD ENSP00000380033/1-731 GGGGLPPKKF GNPGERLRKK KWDLSELPKF EKNFYVEHPE VARLTPYEVD BACU013364/1-652 GGGGLPPKKF GNPGERLRKK KWDLSELPKF EKNFYVEHPE VARLTPYEVD ENSBTAP00000037506/1-650 GGGGLPPKKF GNPGERLRKK KWDLSELPKF EKNFYVEHPE VARLTPYEVD 151 200 bmy_01118T0/1-417 ELRRKKEITV RGGDVCPKPV FAFHHANFPQ YVMDVLMDQH FTEPTPIQCQ ENSTTRP00000005306/1-632 ELRRKKEITV RGGDVCPKPV FAFHHANFPQ YVMDVLMDQH FTEPTPIQCQ ENSP00000380033/1-731 ELRRKKEITV RGGDVCPKPV FAFHHANFPQ YVMDVLMDQH FTEPTPIQCQ BACU013364/1-652 ELRRKKEITV RGGDVCPKPV FAFHHANFPQ YVMDVLMDQH FTEPTPIQCQ ENSBTAP00000037506/1-650 ELRRKKEITV RGGDVCPKPV FAFHHANFPQ YVMDVLMDQH FTEPTPIQCQ 201 250 bmy_01118T0/1-417 GFPLALSGRD MVGIAQTGSG KTLA------ ---------- ------CLVL ENSTTRP00000005306/1-632 GFPLALSGRD MVGIAQTGSG KTLAYLLPAI VHINHQPYLE RGDGPICLVL ENSP00000380033/1-731 GFPLALSGRD MVGIAQTGSG KTLAYLLPAI VHINHQPYLE RGDGPICLVL BACU013364/1-652 GFPLALSGRD MVGIAQTGSG KTLAYLLPAI VHINHQPYLE RGDGPICLVL ENSBTAP00000037506/1-650 GFPLALSGRD MVGIAQTGSG KTLAYLLPAI VHINHQPYLE RGDGPICLVL 251 300 bmy_01118T0/1-417 APTRELAQQV QQVADDYGKC SRLKSTCIYG GAPKGPQIRD LERGVEICIA ENSTTRP00000005306/1-632 APTRELAQQV QQVADDYGKC SRLKSTCIYG GAPKGPQIRD LERGVEICIA ENSP00000380033/1-731 APTRELAQQV QQVADDYGKC SRLKSTCIYG GAPKGPQIRD LERGVEICIA BACU013364/1-652 APTRELAQQV QQVADDYGKC SRLKSTCIYG GAPKGPQIRD LERGVEICIA ENSBTAP00000037506/1-650 APTRELAQQV QQVADDYGKC SRLKSTCIYG GAPKGPQIRD LERGVEICIA 301 350 bmy_01118T0/1-417 TPGRLIDFLE SGKTNLRRCT YLVLDEADRM LDMGFEPQIR KIVDQIRPDR ENSTTRP00000005306/1-632 TPGRLIDFLE SGKTNLRRCT YLVLDEADRM LDMGFEPQIR KIVDQIRXXX ENSP00000380033/1-731 TPGRLIDFLE SGKTNLRRCT YLVLDEADRM LDMGFEPQIR KIVDQIRPDR BACU013364/1-652 TPGRLIDFLE SGKTNLRRCT YLVLDEADRM LDMGFEPQIR KIVDQIRPDR ENSBTAP00000037506/1-650 TPGRLIDFLE SGKTNLRRCT YLVLDEADRM LDMGFEPQIR KIVDQIRPDR 351 400 bmy_01118T0/1-417 QTLMWSATWP KEVRQLAEDF LRDYTQINVG NLELSANHNI LQIVDVCMES ENSTTRP00000005306/1-632 XXXMWSATWP KEVRQLAED- LRDYTQINVG NLELSANHNI LQIVDVCMES ENSP00000380033/1-731 QTLMWSATWP KEVRQLAEDF LRDYTQINVG NLELSANHNI LQIVDVCMES BACU013364/1-652 QTLMWSATWP KEVRQLAEDF LRDYTQINVG NLELSANHNI LQIVDVCMES ENSBTAP00000037506/1-650 QTLMWSATWP KEVRQLAEDF LRDYTQINVG NLELSANHNI LQIVDVCMES 401 450 bmy_01118T0/1-417 EKDHKLIQLM EEIMAEKENK TIIFVETKRR CDDLTRRMRR DGWPAM---- ENSTTRP00000005306/1-632 EKDHKLIQLM EEIMAEKENK TIIFVETKRR CDDLTRRMRR DGWPAMCIHG ENSP00000380033/1-731 EKDHKLIQLM EEIMAEKENK TIIFVETKRR CDDLTRRMRR DGWPAMCIHG BACU013364/1-652 EKDHKLIQLM EEIMAEKENK TIIFVETKRR CDDLTRRMRR DGWPAMCIHG ENSBTAP00000037506/1-650 EKDHKLIQLM EEIMAEKENK TIIFVETKRR CDDLTRRMRR DGWPAMCIHG 451 500 bmy_01118T0/1-417 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005306/1-632 DKSQPERDWV LNEFRSGKAP ILIATDVASR GLDVEDVKFV INYDYPNSSE ENSP00000380033/1-731 DKSQPERDWV LNEFRSGKAP ILIATDVASR GLDVEDVKFV INYDYPNSSE BACU013364/1-652 DKSQPERDWV LNEFRSGKAP ILIATDVASR GLDVEDVKFV INYDYPNSSE ENSBTAP00000037506/1-650 DKSQPERDWV LNEFRSGKAP ILIATDVASR GLDVEDVKFV INYDYPNSSE 501 550 bmy_01118T0/1-417 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005306/1-632 DYVHRIGRTA RSTNKGTAYT FFTPGNLKQA RELIKVLEEA NQAINPKLMQ ENSP00000380033/1-731 DYVHRIGRTA RSTNKGTAYT FFTPGNLKQA RELIKVLEEA NQAINPKLMQ BACU013364/1-652 DYVHRIGRTA RSTNKGTAYT FFTPGNLKQA RELIKVLEEA NQAINPKLMQ ENSBTAP00000037506/1-650 DYVHRIGRTA RSTNKGTAYT FFTPGNLKQA RELIKVLEEA NQAINPKLMQ 551 600 bmy_01118T0/1-417 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005306/1-632 LVDHRGGGGG G--GGRSRYR TTSSANNPNL MYQDECDRRL RGVKDGGRRD ENSP00000380033/1-731 LVDHRGGGGG GGKGGRSRYR TTSSANNPNL MYQDECDRRL RGVKDGGRRD BACU013364/1-652 LVDHRGGGGG GGKGGRSRYR TTSSANNPNL MYQDECDRRL RGVKDGGRRD ENSBTAP00000037506/1-650 LVDHRGGGGG G--GGRSRYR TTSSANNPNL MYQDECDRRL RGVKDGGRRD 601 650 bmy_01118T0/1-417 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005306/1-632 SASYRDRGET DRAGYANGSG YGSPNSAFGA QAGQYTYGQG TYGAAAYGTS ENSP00000380033/1-731 SASYRDRSET DRAGYANGSG YGSPNSAFGA QAGQYTYGQG TYGAAAYGTS BACU013364/1-652 SASYRDRGET DRAGYANGSG YGSPNSAFGA QAGQYTYGQG TYGAAAYGTS ENSBTAP00000037506/1-650 SASYRDRGET DRAGYANGSG YGSPNSAFGA QAGQYTYGQG TYGAAAYGTS 651 700 bmy_01118T0/1-417 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005306/1-632 GYTAQEYGAG TYGASSTTST GRSSQSSSQQ FSGMGRSGQQ PQPLMSQQFA ENSP00000380033/1-731 SYTAQEYGAG TYGASSTTST GRSSQSSSQQ FSGIGRSGQQ PQPLMSQQFA BACU013364/1-652 GYTAQEYGAG TYGASSTAST GRSSQSSSQQ FSGMGRSGQQ PQPLMSQQFA ENSBTAP00000037506/1-650 GYTAQEYGAG TYGASSTTST GRSSQSSSQQ FSGIGRSGQQ PQPLMSQQFA 701 750 bmy_01118T0/1-417 ---------- ---------- ---------- - ENSTTRP00000005306/1-632 QPPGATNMIG YMGQTAYQYP PPPPPPPPSR K ENSP00000380033/1-731 QPPGATNMIG YMGQTAYQYP PPPPPPPPSR K BACU013364/1-652 QPPGATNMIG YMGQTAYQYP PPPPPPPPSR K ENSBTAP00000037506/1-650 QPPGATNMIG YMGQTAYQYP PPPPPPPPSR K