KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:43 2014 Check: 00 .. Name: bmy_01126T0/1-632 Len: 893 Check: 6012 Weight: 1.00 Name: ENSP00000333142/1-806 Len: 893 Check: 9057 Weight: 1.00 Name: ENSBTAP00000037521/1-805 Len: 893 Check: 2700 Weight: 1.00 Name: BACU013357/1-806 Len: 893 Check: 5386 Weight: 1.00 Name: ENSTTRP00000005301/1-784 Len: 893 Check: 7058 Weight: 1.00 // 1 50 bmy_01126T0/1-632 RE---QVSPQ LEAGRDLLAG TQVFRFHQ-- ----GHGPRV PPGSFLCL-- ENSP00000333142/1-806 MQFFGRLVNT FSGVTNLFSN P--FRVKEVA VADYTSSDRV REEGQLILFQ ENSBTAP00000037521/1-805 MQFFGRLVNT LSSVTNLFVN P--FRVKEVA VEDYHSRRRV REEGQLILFQ BACU013357/1-806 MQFFGRLVNT LSSVTNLFSN P--FRVKEVA VADYSSSGRV REERQLILFQ ENSTTRP00000005301/1-784 MQFFGRLVST LSGVTNLFSN P--FRVKEVA VADYSSSGRV REERQLCLFQ 51 100 bmy_01126T0/1-632 --PPLPWL-- ---------- LRLFQLETEA DALVNFQQYS SQLPPFYESS ENSP00000333142/1-806 NTPNRTWDCV LVNPRNSQSG FRLFQLELEA DALVNFHQYS SQLLPFYESS ENSBTAP00000037521/1-805 NSSNRTWDCI LVNPRNAQSG FRLFQLETEA DALVNFQQYS SQLPPFYESS BACU013357/1-806 NAPSRTWDCI LVNPRNPQSG FRLFQLETEA DALVNFQQYS SQLPPFYESS ENSTTRP00000005301/1-784 NAPSRTWDCI LVNPRNPQSG FRLFQLETEA DA-VNFQQYS SQL-PFYESS 101 150 bmy_01126T0/1-632 NHILHVEVLQ QLTDLIRNHP SWSVAHLAVE LGIRECFHHS RIISCANSRE ENSP00000333142/1-806 PQVLHTEVLQ HLTDLIRNHP SWSVAHLAVE LGIRECFHHS RIISCANCAE ENSBTAP00000037521/1-805 THILQAEVLQ QLTDLIRSHP SWSVAHLAVE LGIRECFHHS HIISCANNKE BACU013357/1-806 NHILHVEVLQ QLTDLIRNHP SWSVAHLAVE LGIRECFHHS RIISCANSRE ENSTTRP00000005301/1-784 NHI-HVEV-Q QLTDLIRNHP SWSVAHLAVE LGIRECFHHS RIISCANNRE 151 200 bmy_01126T0/1-632 NEEGCTPLHL ACRKGDWEIL VELVQYCHAQ MDVTDNNGET AFHYAVQSDN ENSP00000333142/1-806 NEEGCTPLHL ACRKGDGEIL VELVQYCHTQ MDVTDYKGET VFHYAVQGDN ENSBTAP00000037521/1-805 NEEGCTPLHL ACRKGDTEVL SELVQHCRAN MDVTDNSGET AFHYAVQGDS BACU013357/1-806 NEEGCTPLHL ACRKGDWEIL VELVQYCHAQ MDVTDNNGET AFHYAVQSDN ENSTTRP00000005301/1-784 NEEGCTPLHL ACRKGDWEIL VELVQYCHAQ MDVTDNNGET AFHYAVQSDN 201 250 bmy_01126T0/1-632 SQVLQLLGKN ASAGLNQVNN QGLTPLHLAC QLGKQEMVRV LLLCNARCNI ENSP00000333142/1-806 SQVLQLLGRN AVAGLNQVNN QGLTPLHLAC QLGKQEMVRV LLLCNARCNI ENSBTAP00000037521/1-805 SQVLQLLGKN ASGGLNQVNN QGLTPLHLAC QLGKQEMVRV LLLCNARCNI BACU013357/1-806 SQVLQLLGKN ASAGLNQVNN QGLTPLHLAC QLGKQEMVRV LLLCNARCNI ENSTTRP00000005301/1-784 SQVLQLLGKN ASAGVNQVNN QGLTPLHLAC QLGKQEMVRV LLLCNARCNI 251 300 bmy_01126T0/1-632 MGPNGYPIHM AMKFSQKGCA EMIVSMDSSQ IHSKDPRYGA SPLHWAKNAE ENSP00000333142/1-806 MGPNGYPIHS AMKFSQKGCA EMIISMDSSQ IHSKDPRYGA SPLHWAKNAE ENSBTAP00000037521/1-805 MGPGGYPIHT AMKFSQKGCA EMIVSMDSSQ IHSKDPRYGA SPLHWAKNAE BACU013357/1-806 MGPSGYPIHM AMKFSQKGCA EMIVSMDSSQ IHSKDPRYGA SPLHWAKNAE ENSTTRP00000005301/1-784 MGPSGYPIHM AMKFSQKGCA EMIVSMDSSQ IHSKDPRYGA SPLHWAKTAE 301 350 bmy_01126T0/1-632 MARLLLKRGC DVNSTSSVGY TALHVAVMRN RFDCVMVLLT HGANAEARGE ENSP00000333142/1-806 MARMLLKRGC NVNSTSSAGN TALHVAVMRN RFDCAIVLLT HGANADARGE ENSBTAP00000037521/1-805 MARLLLKRGC DVNGTSSAGN TALHVAVMRN RFDCVMVLLT HGANADARGE BACU013357/1-806 MARLLLKRGC DVNSTSSVGN TALHVAVMRN RFDCVMVLLT HGANAEARGE ENSTTRP00000005301/1-784 T---LL---- ---------- SALHVAVMRN RFDCVMALLT HGANAEARGE 351 400 bmy_01126T0/1-632 HGNTPLHLAM SKDNMEMIKA LIVFGAEVDI PNDFGETPAF IASKHSKLVT ENSP00000333142/1-806 HGNTPLHLAM SKDNVEMIKA LIVFGAEVDT PNDFGETPTF LASKIGRLVT ENSBTAP00000037521/1-805 HGNTPLHLAM SKDNVEMIKA LIVFGAEVDT PNDFGETPAF IASRISKLVT BACU013357/1-806 HGNTPLHLAM SKDNMEMIKA LIVFGAEVDI PNDFGETPAF IASKHSKLVT ENSTTRP00000005301/1-784 HGNTPLHLAV SKDNMEMVKA LIVFGAEVDI PNDFGETPAF IASKNSKLVT 401 450 bmy_01126T0/1-632 RKALLTLLRT VGADYRSSLI QAVSAEQCSA ATHSFFSPER SQPPVISFNN ENSP00000333142/1-806 RKAILTLLRT VGAEYCFPPI HGVPAEQGSA APHHPFSLER AQPPPISLNN ENSBTAP00000037521/1-805 RKALLTLLRT VGADYRFPLT QGFSTEQCSA AAP-SFSMER SHPPPISLNN BACU013357/1-806 RKALLTLLRT VGADYRSPRI PAVSAEQCSA ATHSSSSPER SQPPAISFNN ENSTTRP00000005301/1-784 RKALLTLLRT VGADYRSPLV QGVPAEQCSP AAR-SFSLER SPPPPISFNN 451 500 bmy_01126T0/1-632 LELQDLMHIS RARKPTFILS SMRDEKRTLP GQGPCRPPAT APPPLPRSGL ENSP00000333142/1-806 LELQDLMHIS RARKPAFILG SMRDEKRT-- ---------- ---------- ENSBTAP00000037521/1-805 LELQDITQIS RARKPAFILS SMRDEKRT-- ---------- ---------- BACU013357/1-806 LELQDLMHIS RARKPAFVLS SMRDEKRT-- ---------- ---------- ENSTTRP00000005301/1-784 LELQDLMHIS RARKPAFILS SMRDEKRT-- ---------- ---------- 501 550 bmy_01126T0/1-632 AAGLGSLSRK RRGTPEAGRA GSFIYQLCVR GTPLPSAGEE RQQTSDQKQL ENSP00000333142/1-806 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037521/1-805 ---------- ---------- ---------- ---------- ---------- BACU013357/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005301/1-784 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_01126T0/1-632 WMEARRALHH RSGRDHLLCL DGGGVKGLVI IQLLIAIEKA SGIATKDLFD ENSP00000333142/1-806 ---------- ---HDHLLCL DGGGVKGLII IQLLIAIEKA SGVATKDLFD ENSBTAP00000037521/1-805 ---------- ---HDHLLCL DGGGVKGLVI IQLLIAIEKA SGIATKDLFD BACU013357/1-806 ---------- ---RDHLLCL DGGGVKGLVI IQLLIAIEKA SGIATKDLFD ENSTTRP00000005301/1-784 ---------- ---RDHLLCL DGGGVKGLVI IQLLIAIEKA SGIATKDLFD 601 650 bmy_01126T0/1-632 WVAGTSTGGI LALAILHSE- ---------- ---------- ---------- ENSP00000333142/1-806 WVAGTSTGGI LALAILHSKS MAYMRGMYFR MKDEVFRGSR PYESGPLEEF ENSBTAP00000037521/1-805 WVAGTSTGGI LALAILHSKS MAYMRGVYFR MKDEVFRGSR PYESGPLEEF BACU013357/1-806 WVAGTSTGGI LALAILHSKS MAYMRGMYFR MKDEVFRGSR PYESGPLEEF ENSTTRP00000005301/1-784 WVAGTSTGGI LALAILHGKS MAYMRGVYFR MKDEVFQGSR PYESGPLEEF 651 700 bmy_01126T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000333142/1-806 LKREFGEHTK MTDVRKPKVM LTGTLSDRQP AELHLFRNYD APETVREPRF ENSBTAP00000037521/1-805 LKREFGEHTK MTDVKKPKVM LTGTLSDRQP AELHLFRNYE APECVREPRF BACU013357/1-806 LKREFGEHTK MTDVKKPKVM LTGTLSDRQP AELHLFRNYE APECVREPRV ENSTTRP00000005301/1-784 LKREFGEHTK MTDVKKPKVM LTGTLSDRQP AELHLFRNYE APECVREPRV 701 750 bmy_01126T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000333142/1-806 NQNVNLRPPA QPSDQLVWRA ARSSGAAPTY FRPNGRFLDG GLLANNPTLD ENSBTAP00000037521/1-805 SQNVNLKPPT HPSEQLVWRA ARSSGAAPTY FRPNGRFLDG GLLANNPTLD BACU013357/1-806 GQNVNLKPPT QPSEQLGGRA ARSSGAAPTY FRPSGRFLDG GLLANNPTLD ENSTTRP00000005301/1-784 GQNVNLKPPP QPSEQLVWRA ARSSGAAPTY FRPNGRFLDG GLLANNPTLD 751 800 bmy_01126T0/1-632 ---------- ---------- ---------- ---------- --------GS ENSP00000333142/1-806 AMTEIHEYNQ DLIRKGQANK VKKLSIVVSL GTGRSPQVPV TCVDVFRPSN ENSBTAP00000037521/1-805 AMTEIHEYNQ DLIRKGQDSK VKKLSVVVSL GTGRSPQVPV TCVDVFRPSN BACU013357/1-806 AMTEIHEYNQ DLIRKGQSNK VKKLSIVVSL GTGRSPQVPV TCVDVFRPSN ENSTTRP00000005301/1-784 AMTEIHEYNQ DLIRKGQGNK VKKLSVVVSL GTGRSPQVPV TCVDVFRPSS 801 850 bmy_01126T0/1-632 PW-------- AAEAGRVGAE TC-------- ---------- --------PQ ENSP00000333142/1-806 PWELAKTVFG AKELGKMVVD CCTDPDGRAV DRARAWCEMV GIQYFRLNPQ ENSBTAP00000037521/1-805 PWELAKTVFG AKELGRMVVD CCTDPDGRAV DRARAWCEMV GIQYFRLNPQ BACU013357/1-806 PWELAKTVFG AKELSKMVVD CCTDPDGRAV DRARAWCEMV DIQYFRLNPQ ENSTTRP00000005301/1-784 PWELAKTVFG AKELGKMVVE CCTDPDGRAV DRARAWCEMV GIQYFRLSPQ 851 900 bmy_01126T0/1-632 IGLSLFSELC GER------- ------HGGG E--------- -GP ENSP00000333142/1-806 LGTDIMLDEV SDTVLVNALW ETEVYIYEHR EEFQKLIQLL LSP ENSBTAP00000037521/1-805 LGTDIMLDEI NDTVLVNALW ETEVYIYEHR EQFQKLVQLL LSP BACU013357/1-806 LGTDIMLDEV SDTVLVNALW ETEVYIYEHR EQFQKLIQLL LSP ENSTTRP00000005301/1-784 LGTDIMLDEV NDTVLVNALW QTEVYVYEHR EQFQELIQLL LSP