KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:45 2014 Check: 00 .. Name: ENSP00000356581/1-1250 Len: 1252 Check: 5346 Weight: 1.00 Name: ENSBTAP00000037559/1-1190 Len: 1252 Check: 3624 Weight: 1.00 Name: ENSTTRP00000014230/1-1248 Len: 1252 Check: 3954 Weight: 1.00 Name: bmy_12068T0/1-1101 Len: 1252 Check: 7890 Weight: 1.00 Name: BACU003653/1-966 Len: 1252 Check: 3486 Weight: 1.00 // 1 50 ENSP00000356581/1-1250 MMFRSDRMWS CHWKWKPSPL LFLFALYIMC VPHSVWGCAN CRVVLSNPSG ENSBTAP00000037559/1-1190 ---------- ---------- ---------- ---TVWACAN CRVVLSNPSG ENSTTRP00000014230/1-1248 -MFHSGRMWS CHSKWKPSSL LFLFALYIVY VPPSAWGCAN CRVVLSNPSG bmy_12068T0/1-1101 -PGSSYEFVS AEDSKRIST- ---FTLLGCC TKWAAWGCAN CRVVLSNPSG BACU003653/1-966 ---------- ---------- ---------- -----WGCAN CRVVLPNPSG 51 100 ENSP00000356581/1-1250 TFTSPCYPND YPNSQACMWT LRAPTGYIIQ ITFNDFDIEE APNCIYDSLS ENSBTAP00000037559/1-1190 TFTSPCYPND YPNSQACMWT LRAPTGYIIQ ITFNDFDIEE APNCIYDSLS ENSTTRP00000014230/1-1248 TFTSPCYPND YPNSQACMWT LRAPAGYIIQ ITFNDFDIEE APNCIYDSLS bmy_12068T0/1-1101 TFTSPCYPND YPNSQACMWT LRAPAGYIIQ ITFNDFDIEE APNCIYDSLS BACU003653/1-966 TFTSPCYPND YPNSQACMWT LRAPAGYIIQ ITFNDFDIEE APNCIYDSLS 101 150 ENSP00000356581/1-1250 LDNGESQTKF CGATAKGLSF NSSANEMHVS FSSDFSIQKK GFNASYIRVA ENSBTAP00000037559/1-1190 LDNGESQTKF CGATAKGLSF NSSVNEMHVS FSSDFSIQKK GFNASYVRVA ENSTTRP00000014230/1-1248 LDNGESQTKF CGATAKGLSF NSSANEMHVS FSSDFSIQKK GFNASYIRVA bmy_12068T0/1-1101 LDNGESQTKF CGATAKGLSF NSSANEMHVS FSSDFSIQKK GFNASYIRVA BACU003653/1-966 LDNGESQTKF CGATAKGLSF NSSANEMHVS FSSDFSIQKK GFNASYIRVA 151 200 ENSP00000356581/1-1250 VSLRNQKVIL PQTSDAYQVS VAKSISIPEL SAFTLCFEAT KVGHEDSDWT ENSBTAP00000037559/1-1190 VSLRNQKVIL PQSLDSYQVS VAKSVSIPEL RAFTLCFEAT KIGKEDSEWT ENSTTRP00000014230/1-1248 VSLRNQKVIL PQTLDTYQVS LAKSVSIPEL RAFTLCFEAT KIGKEDNEWT bmy_12068T0/1-1101 VSLRNQKVIL PQMLDTYQVS LAKSVSIPEL RAFTLCFEAT KIGKEDNEWT BACU003653/1-966 VSLRNQKVIL PQMLDTYQVS LAKSVSIPEL RAFTLCFEAT KIGKEDNEWT 201 250 ENSP00000356581/1-1250 AFSYSNASFT QLLSFGKAKS GYFLSISDSK CLLNNALPVK EKEDIFAESF ENSBTAP00000037559/1-1190 AFSYSDASFP QLLSFGKTKS GYFLSFFGSK CLLNSALPVK DKEDIFTESF ENSTTRP00000014230/1-1248 AFSYSDASFT QLLSFGKTKN GYFLSISGSK CLLNSALPVK DKEDIFTESF bmy_12068T0/1-1101 AFSYSDASFT QLLSFGKTKN GYFLSISGSK CLLNSALPIK DKEDIFTESF BACU003653/1-966 AFSYSDASFT QLLSFGKTKN GYFLSISGSK CLLNSALPVK DKEDIFTESF 251 300 ENSP00000356581/1-1250 EQLCLVWNNS LGSIGVNFKR NYETVPCDST ISKVIPGNGK LLLGSNQNEI ENSBTAP00000037559/1-1190 EQLCIAWSSS LGSVGVNFKR NYGTVSCNSS MGKVIPGNGK LLLGSNQHDI ENSTTRP00000014230/1-1248 EQLCIVWNNS LGYVGVNFKR NYGAVSCDST ISKVIPGNGK LLLGSNQNEI bmy_12068T0/1-1101 EQLCIVWNNS LGYVGVNFKR NYGAVSCDST ISKVIPGNGK LLLGSNQNEI BACU003653/1-966 EQLCIVWNNS LGYVGVNFKR NYGAVSCDST ISKVIPGNGK LLLGSNQNEI 301 350 ENSP00000356581/1-1250 VSLKGDIYNF RLWNFTMNAK ILSNLSCNVK GNVVDWQNDF WNIPNLALKA ENSBTAP00000037559/1-1190 GSLKGDIYNF RLWNFTISSK ILSNLSCSVK GNVVDWQNDF WNIPTLALKA ENSTTRP00000014230/1-1248 ASLKGDIYNF RLWNFAMNSK ILFNLSCNVK GNVVDWQNDF WNIPTLALKA bmy_12068T0/1-1101 ASLKGDIYNF RLWNFAMNSK ILFNLSCNVK GNVVDWQNDF WNIPTLALKA BACU003653/1-966 ASLKGDIYNF RLWNFAMNSK ILFNLSCNVK GNVVDWQNDF WNIPTLALKA 351 400 ENSP00000356581/1-1250 ESNLSC--GS YLIPLPAAEL ASCADLGTLC QATVNSPSTT PPTVTTNMPV ENSBTAP00000037559/1-1190 ESNLSCDQGS YLIPLPAAEL ASCADLGTLC QATVNPPSTT SPTVTTNMPV ENSTTRP00000014230/1-1248 ESNLSC--XX XXXXXXXXXX XXXXXXXXXX XXTVNSPSTT PPTVTTNMPV bmy_12068T0/1-1101 ESNLSC--GS YLIPLPAAEV ASCADLGTLC QATVNSPSTT PPTVTTNMPV BACU003653/1-966 ESNLSC--GV IL-------- ---------- ----GSP--- ---------- 401 450 ENSP00000356581/1-1250 TNRIDKQRND GIIYRISVVI QNILRHPEVK VQSKVAEWLN STFQNWNYTV ENSBTAP00000037559/1-1190 TNRTDKQRND GIIYRISIVL QNILPHPEVK VQSKVAEWLN STFQNWNYTV ENSTTRP00000014230/1-1248 TNKTDKQRND GIIYRIFIEI QNILHHPEVK VQSKVAEWLX XXXXXXXXXX bmy_12068T0/1-1101 TNRTDKQRND GIIYRIFIEI QNILRHPEVK VQSKVAEWLN STFQNWNYTV BACU003653/1-966 ---------- ----HIFFN- -TVFKAP--- ---------- --FQALRLLE 451 500 ENSP00000356581/1-1250 YVVNISFHLS AGEDKIKVKR SLEDEPRLVL WALLVYNATN NTNLEGKIIQ ENSBTAP00000037559/1-1190 YVVNISFHLS TGEDKIKVRR SVVTDQRLVI LALLVYNATN NPTLEGRTIQ ENSTTRP00000014230/1-1248 XXXXXXFHLS TGEDKIKVRR SIVNDQRLVI LALLVYNATN NPDLEGRTIQ bmy_12068T0/1-1101 YVVNISFHLS TGEDKIKVRR SIVNDQRLVI WALLVYNATN NPDLEGRTIQ BACU003653/1-966 SIRYVLVELS ---------- -----HWLAI WALLVYNATN NPDLEGRTIQ 501 550 ENSP00000356581/1-1250 QKLLKNNESL DEGLRLHTVN VRQLGHCLAM EEPKGYYWPS IQPSEYVLPC ENSBTAP00000037559/1-1190 QKLLRNNESL DEGLRLHKVN VRQLGVCHAD EKPKGYKWPS IQPSEYRTPC ENSTTRP00000014230/1-1248 QKLLRNNESL DEGLRLHRVN VRRLGICHDD EDPKGYKWPA IQPSVYNAPC bmy_12068T0/1-1101 QKLLRNNESL DEGLRLHRVN VKRLGICHDD EDPKGYKWPA IQPSVYNAPC BACU003653/1-966 QKLLRNNESL DEGLRLHRVN VKRLGICHDD EDPKGYKWPA IQPSVYNAPC 551 600 ENSP00000356581/1-1250 PDKPGFSASR ICFYNATNPL VTYWGPVDIS NCLKEANEVA NQILNLTADG ENSBTAP00000037559/1-1190 LGKPGFFASR TCYDDPNNTS VAIWGLPDIS NCSREANEVA NEILNLTSDG ENSTTRP00000014230/1-1248 PGKPGFYASR TCHHDPANTS LAYWGPPDIS NCSSEANEVA NQILNLTGDG bmy_12068T0/1-1101 PGKPGFYASR ACHHDPANTS LAYWGPPDIS NCSSEANEVA NQILNLTGDG BACU003653/1-966 PGKPGFYASR TCHHDPANTS LAYWGPPDIS NCSSEANEVA NQILNLTGDG 601 650 ENSP00000356581/1-1250 QNLTSANITN IVEQVKRIVN KEENIDITLG STLMNIFSNI LSSSDSDLLE ENSBTAP00000037559/1-1190 QTLSSANITS IVEKVKRIVN EKENIDITLG STLMNIFSNI LTSPDSDLLE ENSTTRP00000014230/1-1248 QTLNSANITS IVEQVKRIVN KEGNIDITLG STLMNIFSNI LTSPDRDLLE bmy_12068T0/1-1101 QTLNSANITS IVEQVKRIVN KEENIDITLG STLMNIFSNI LTSPDRDLLE BACU003653/1-966 QTLNSANITS IVEQVKRIVN KEENIDITLG STLMNIFSNI LTSPDRDLLE 651 700 ENSP00000356581/1-1250 SSSEALKTID ELAFKIDLNS TSHVNITTRN LALSVSSLLP GTNAISNFSI ENSBTAP00000037559/1-1190 SSSEALKTID ELAFKIDLQS TTHMNITTQN LALGVSSVSP ETNEVSNFSI ENSTTRP00000014230/1-1248 SSSEALKTID ELAFKIDLHS TSHVNITTRN LALGVSSVSP ETNEISNFSI bmy_12068T0/1-1101 SSSEALKTID ELAFKIDLHS TSHVNITTRN LALGVSSVSP ETNEISNFSI BACU003653/1-966 SSSEALKTID ELAFKIDLHS TSHVNITTRN LALGVSSVSP ETSEISNFSI 701 750 ENSP00000356581/1-1250 GLPSNNESYF QMDFESGQVD PLASVILPPN LLENLSPEDS VLVRRAQFTF ENSBTAP00000037559/1-1190 GLPSNNESYF QMDFKSGQMD PLASVILPPN LLKNLSEEDS VLVKRAQFTF ENSTTRP00000014230/1-1248 GLPSNNESYF QMDFESGQMD PLASVILPPN LLENLSEEDS VLVKRAQFTF bmy_12068T0/1-1101 GLPSNNESYF QMDFGSGQMD PLASVILPPN LLENLSEEDS VLVKRAQFTF BACU003653/1-966 GLPSNNESYF QMDFGSGQMD PLASVILPPN LLENLSEEDS VLVKRAQFTF 751 800 ENSP00000356581/1-1250 FNKTGLFQDV GPQRKTLVSY VMACSIGNIT IQNLKDPVQI KIKHTRTQEV ENSBTAP00000037559/1-1190 FNKTGLFQDV GTKKGTLVSY VMACSIGNIT IQGLKDPVQI KIKHTRTQAM ENSTTRP00000014230/1-1248 FNKTGLFQDV D-QEGTLVSY VMACSIGNIT IQDLKDPVRI KIKHTRTQAV bmy_12068T0/1-1101 FNKTGLFQDV GTKKGTLVSY VMACSIGNIT IQDLKDPVRI KIKHTRTQAV BACU003653/1-966 FNKTGLFQDV GTKKGTLVSY VMACSIGNIT IQDLKDPVRI KIKHTRTQAV 801 850 ENSP00000356581/1-1250 HHPICAFWDL NKNKSFGGWN TSGCVAHRDS DASETVCLCN HFTHFGVLMD ENSBTAP00000037559/1-1190 AHPICAFWDL NKNESSGFWN TSGCVAHKDS DANETVCLCN HLTHFGVLMD ENSTTRP00000014230/1-1248 PHPICAFWDL NKNEGSGFWN TSGCVAHKDS DASETVCLCN HLTHFGILMD bmy_12068T0/1-1101 PHPICAFWDL NKNEDSGFWN TSGCVAHKDS EANETVCLCN HLTHFGILMD BACU003653/1-966 PHPICAFWDL NKN------- ---------- ---------- ---------- 851 900 ENSP00000356581/1-1250 LPRSASQLDA RNTKVLTFIS YIGCGISAIF SAATLLTYVA FEKLRRDYPS ENSBTAP00000037559/1-1190 LQGTASQLDA KNTKILTFIT YIGCGISAIF SAATLLTYVA FEKLRRDYPS ENSTTRP00000014230/1-1248 LQGTASQLDS KNTKVLTFIT NIGCGISAIF SAATLLTYVA FEKLRRDYPS bmy_12068T0/1-1101 LQGTASQLDG KNTKVLTFIT NIGCGISAIF SAATLLTYVA FEKLRRDYPS BACU003653/1-966 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000356581/1-1250 KILMNLSTAL LFLNLLFLLD GWITSFNVDG LCIAVAVLLH FFLLATFTWM ENSBTAP00000037559/1-1190 KILMNLSTAL LFLNLVFLLD RWITSFHVDG LCTAIAALLH FFLLAAFTWM ENSTTRP00000014230/1-1248 KILMNLSTAL LFLNLLFLLD GWITSFHVDG LCTAIAALLH FFLLATFTWM bmy_12068T0/1-1101 KILMNLSTAL LFLNLLFLLD GWITSFHVDG LCTAIAALLH FFLLATFTWM BACU003653/1-966 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000356581/1-1250 GLEAIHMYIA LVKVFNTYIR RYILKFCIIG WGLPALVVSV VLASRNNNEV ENSBTAP00000037559/1-1190 GLEAIHMYIA LVKVFNTYIR RYILKFCIVG WGVPILVVSI VLASRKQNEV ENSTTRP00000014230/1-1248 GLEAIHMYIA LVKVFNTYIR RYILKFCIIG WGLPALVVSI VLASRNQNEV bmy_12068T0/1-1101 GLEAIHMYIA LVKVFNTYIR RYILKFCIIG WGLPALVVSI VLASRNQNEV BACU003653/1-966 ---------- ---------- ---------- -GLPALVVSI VLASRNQNEV 1001 1050 ENSP00000356581/1-1250 YGKESYGKEK GDEFCWIQDP VIFYVTCAGY FGVMFFLNIA MFIVVMVQIC ENSBTAP00000037559/1-1190 YGKKSYGREQ GDEFCWIQDP VVFYVTCAGY FGLMFFLNVA MFIVVMVQIC ENSTTRP00000014230/1-1248 YGKESYGKEQ GDEXXXXXXX XXXXXTCAGY FGLMFFLNVA MFIVVMVQIC bmy_12068T0/1-1101 YGKESYGKEQ GDEFCWIKDP VVFYVTCAGY FGLMFFLNVA MFIVVMVQIC BACU003653/1-966 YGKESYGKEQ GDEFCWIKDP VVFYVTCAGY FGLMFFLNVA MFIVVMVQIC 1051 1100 ENSP00000356581/1-1250 GRNGKRSNRT LREEVLRNLR SVVSLTFLLG MTWGFAFFAW GPLNIPFMYL ENSBTAP00000037559/1-1190 GRNGKRSSRT LREEVLRNLR SVVSLTFLLG MTWGFSFFAW GPLNVPFMYL ENSTTRP00000014230/1-1248 GRNGKRSSRT LREEVLRNLR SVVSLTFLLG MTWGFAFFAW GPLNVPFMYL bmy_12068T0/1-1101 GRNGKRSSRT LREEVLRNLR SVVSLTFLLG MTWGFAFFAW GPLNVPFMYL BACU003653/1-966 GRNGKRSSRT LREEVLRNLR SVVSLTFLLG MTWGFAFFAW GPLNVPFMYL 1101 1150 ENSP00000356581/1-1250 FSIFNSLQGL FIFIFHCAMK ENVQKQWRQH LCCGRFRLAD NSDWSKTATN ENSBTAP00000037559/1-1190 FSIFNSLQGL FIFIFHCAMK ENVQKQWRRH LCCGRFRLAD NSDWSKTATN ENSTTRP00000014230/1-1248 FSIFNSLQGL FIFIFHCAMK ENVQKQWRRH LCCGRFRLAD NSDWSKTATN bmy_12068T0/1-1101 FSIFNSLQ-- ---------- ---------- ---------- ---------- BACU003653/1-966 FSIFNSLQGL FIFIFHCAMK ENVQKQWRRH LCCGRFRLAD NSDWSKTATN 1151 1200 ENSP00000356581/1-1250 IIKKSSDNLG KSLSSSSIGS NSTYLTSKSK SSSTTYFKRN SHTDSASMDK ENSBTAP00000037559/1-1190 IIKKSSDNLG KSLSSSSIGS NSTYLTSKSK SSSTTYFKRN SHTVDCQQDH ENSTTRP00000014230/1-1248 IIKKSSDNLG KSLSSSSIGS NSTYLTSKSK YSSTTYFKRN SHTDNAPMDK bmy_12068T0/1-1101 ---------- ---------- ---------- ---------- ---------- BACU003653/1-966 IIKKSSDNLG KSLSSSSIGS NSTYLTSKSK YSSTTYFKRN SHTDNATMDK 1201 1250 ENSP00000356581/1-1250 SLSKLAHADG DQTSIIPVHQ VIDKVKGYCN AHSDNFYKNI IMSDTFSHST ENSBTAP00000037559/1-1190 SFNK------ ---------- --------SG SFRQCFHGQV LIKTDSC--- ENSTTRP00000014230/1-1248 SSSKLTHADG EQTSIIPVHQ VIDKVKGYCN AHSDNFYKNI IMSDTFSHST bmy_12068T0/1-1101 ---------- ---------- ---------- ---------- ---------- BACU003653/1-966 SSSKLTHADG EQTSIIPVHQ VIDKVKGYCN AHSDNFYKNI IMSDTFSHST 1251 1300 ENSP00000356581/1-1250 KF ENSBTAP00000037559/1-1190 -- ENSTTRP00000014230/1-1248 KF bmy_12068T0/1-1101 -- BACU003653/1-966 KF