KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:46 2014 Check: 00 .. Name: ENSP00000011653/1-458 Len: 472 Check: 9315 Weight: 1.00 Name: ENSBTAP00000037566/1-455 Len: 472 Check: 4364 Weight: 1.00 Name: bmy_11487T0/1-394 Len: 472 Check: 2079 Weight: 1.00 Name: ENSTTRP00000004366/1-454 Len: 472 Check: 728 Weight: 1.00 Name: BACU003074/1-446 Len: 472 Check: 151 Weight: 1.00 // 1 50 ENSP00000011653/1-458 MNRGVPFRHL LLVLQLALLP AATQGKKVVL GKKGDTVELT CTASQKKSIQ ENSBTAP00000037566/1-455 MGPGTSLRHL FLVLQLAMLP AGTQGKTVVL GEAGDKAELP CQASQKKNMV bmy_11487T0/1-394 ---------- --ISRVV--- ----GTALAR G--------- CRASRVPQPP ENSTTRP00000004366/1-454 MDPGTSLRHL FLVLQLVMLP AGTQGKKVVL GKAGELAELP CKASQNKSLF BACU003074/1-446 MDPGTSLRHL FLVLQLVMLP AGPQGKKVVL GKAGDLAELP CKAYQNKNLP 51 100 ENSP00000011653/1-458 FHWKNSNQIK ILGNQGSFLT KGPSKLNDRA DSRRSLWDQG NFPLIIKNLK ENSBTAP00000037566/1-455 FSWKDSSQSN ILGKRGLFFY KGTTELSHRV ESKKNLWDQG SFPLIIKNLQ bmy_11487T0/1-394 ---------- ---QYGGVLL PGASNLNSRV ESKRNLWDQG YFPLVIKDLE ENSTTRP00000004366/1-454 FSWKNSYQTK ILGRHGYFWH KGASNLNSRV ESKINLWDQG SFPLVIKDLE BACU003074/1-446 FSWKNSNQIK ILGRHGSFLH KGPSNLNSRV ESKRNLWDQG YFPLVIKDLE 101 150 ENSP00000011653/1-458 IEDSDTYICE VEDQKEEVQL LVFGLTANSD THLLQGQSLT LTLESPPGSS ENSBTAP00000037566/1-455 VTDSGTYTCE VDKKTLEVEL QVFRLTASSD THVLLGQSLT LTLESPSGSN bmy_11487T0/1-394 VPDSGTYICE VEDKRIEVEL QVFRLTASSD THLLLGQSLT MTLKGPSGSN ENSTTRP00000004366/1-454 VPDSGTYICE VEDKKIEVEL QVFRLTASSD TRLLLGQSLT LTLEGPSGSN BACU003074/1-446 VPDSGTYICE VEDKRIEVEL QVFRLTASSD THLMLGQSLT MTLEGPSGSN 151 200 ENSP00000011653/1-458 PSVQCRSPRG KNIQGGKTLS VSQLELQDSG TWTCTVLQNQ KKVEFKIDIV ENSBTAP00000037566/1-455 PSVQWKGPGD NNKRDVKSLS LAQVGLQDSG TWTCTISQSQ QTLEIKIPIV bmy_11487T0/1-394 PSVQWKGPGN TRTNEAKSLS LPQVGLQDSG TWTCTVSQDQ QTLVFSKHIL ENSTTRP00000004366/1-454 PSVQWKGPGN KRKNE-KSLS LPQVGLQDSG TWTCTVSQAQ QTLVFNKHIL BACU003074/1-446 PSVQWKGPGN KRKNEAKSLS LPQVGLQDSG TWTCTVSQDQ QTLVFSKHIL 201 250 ENSP00000011653/1-458 VLAFQKASSI VYKKEGEQVE FSFPLAFTVE KLTGSGEL-W WQAERASSSK ENSBTAP00000037566/1-455 VLAFQKAPET VYVKEGEQAE FSFPLTFEYE NL--SGELTW QLANGDSSSQ bmy_11487T0/1-394 VLAFQEVSST VYAKEGEQVN FSFPLTFKDE NL--SGELCW LQAKGNSSPQ ENSTTRP00000004366/1-454 VLAFQEVSST VYAKEGEQMN FSFPLTFGDE NL--SGELSW LQAKGNSSPE BACU003074/1-446 VLAFQEVSST VYAKEGEQMN FSFPLTFEDE NL--SGELCW LQAEGNSSPQ 251 300 ENSP00000011653/1-458 SWITFDLKNK EVSVKRVTQD PKLQMGKKLP LHLTLPQALP QYAGSGNLTL ENSBTAP00000037566/1-455 SWVTFTVKNR EVKVNKIHND PKLLVGEKLP LRLTLPRTLP QHAGSGTLTL bmy_11487T0/1-394 SWITFTLKNR KVTVEKARKD LKLHMSNELP LHLTLPRALP QYAGSGNLTL ENSTTRP00000004366/1-454 SWITFTLNNG KVTVGKARKD LKLRMSKELP LHLTLPQALP QYAGSGNLTL BACU003074/1-446 SWITFTLKNR KVTVEKARKD LKLLMSQQLP LHLTLPRALP QYAGSGNLTL 301 350 ENSP00000011653/1-458 ALEAKTGKLH QEVNLVVMRA TQLQKNLTCE VWGPTSPKLM LSLKLENKEA ENSBTAP00000037566/1-455 DL--TKGKLQ QKVKLVVMKV TKSPNSLTCE VLGPSPPKLT LNLKMGNQSM bmy_11487T0/1-394 DL--TKGKLY QEVNLVVMRV TKSQNSLTCE VLGPTSPRLT LSLKMENQSM ENSTTRP00000004366/1-454 NL--TKGKLY QEVKLVVMRV TKSPNSLTCE VLGPTSPRLT LSLKKENQSM BACU003074/1-446 HL--TKGKLY QEVNLVVMKV TKSQNSLTCE VLGPTSPRLT LSLKMENQSM 351 400 ENSP00000011653/1-458 KVSKREKAVW VLNPEAGMWQ CLLSDSGQVL LESNIK---- --------VL ENSBTAP00000037566/1-455 KGSNQPKLVT QPEPQAGMWQ CLLSDNGKVL LEAKIE---- --------VL bmy_11487T0/1-394 RVSNQQKLVT VLGPEAGTWR CLLSDKGKVL LESKVKTGRE LSTALSLAVL ENSTTRP00000004366/1-454 RVSDQQKLVT VLGPEAGMWQ CLLSDKGKVL LESKVK---- --------IL BACU003074/1-446 RVSNQQKLVT VLGPEAGMWQ CLLSDKGKVL LESKVK---- --------IL 401 450 ENSP00000011653/1-458 PTWSTPVQPM AL-IVLGGVA GLLLFIGLGI FFCVRCRHRR RQAERMSQIK ENSBTAP00000037566/1-455 PSEFTQAWPK LLPMVLGGIA GLVLFTVCCA -FCVKCWHRR RRAERMSQIK bmy_11487T0/1-394 PPVLTHAWPK LLAVVLGGIT GLLLLIGFCI -FSVKCWHRR ---------- ENSTTRP00000004366/1-454 PPVLARAWPK LLAVVLGGVA SLLLLTGFCI -FSAKYWHRR RRAQRTSQIK BACU003074/1-446 PPVLTHAWPK LLAVVLGGTT SLLLLVGFCI -FSVKCWHRR RQAERMSQIK 451 500 ENSP00000011653/1-458 RLLSEKKTCQ CPHRFQKTCS PI ENSBTAP00000037566/1-455 RLLSEKKTCQ CPHEAQDWSL PL bmy_11487T0/1-394 ---------- ---------- -- ENSTTRP00000004366/1-454 RLLSEKKTCH CSHRLQKTCS LT BACU003074/1-446 TLLSEKKTCH CSQ------- --