KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:47 2014 Check: 00 .. Name: ENSTTRP00000002340/1-1001 Len: 1016 Check: 6645 Weight: 1.00 Name: bmy_04527T0/1-755 Len: 1016 Check: 1362 Weight: 1.00 Name: BACU018272/1-962 Len: 1016 Check: 4245 Weight: 1.00 Name: ENSP00000166244/1-1005 Len: 1016 Check: 458 Weight: 1.00 Name: ENSBTAP00000037611/1-976 Len: 1016 Check: 943 Weight: 1.00 // 1 50 ENSTTRP00000002340/1-1001 MAPARGRLPP ALWVVTAAAA AATCVSAARG EVNLLDTSTI HGDWGWLTYP bmy_04527T0/1-755 MVEEGFKEEK EL-------- ---ELSLEGW GMNLLDTSTI HGDWGWLTYP BACU018272/1-962 ---------- ---------- ---------- ---------- ---FSWLCSL ENSP00000166244/1-1005 MAPARGRLPP ALWVVTAAAA AATCVSAARG EVNLLDTSTI HGDWGWLTYP ENSBTAP00000037611/1-976 ---------- ---------- ---------M SLNLLDTSTI HGDWGWLTYP 51 100 ENSTTRP00000002340/1-1001 AHGWDSINEV DESFRPIHTY QVCNVMSPNQ NNWLRTSWVP RDGARRVYAE bmy_04527T0/1-755 AHGWDSINEV DESFRPIHTY QVCNVMSPNQ NNWLRTSWVP RDGARRVYAE BACU018272/1-962 CPQWDSINEV DESFRPIHTY QVCNVMSPNQ NNWLRTSWVP RDGARRVYAE ENSP00000166244/1-1005 AHGWDSINEV DESFQPIHTY QVCNVMSPNQ NNWLRTSWVP RDGARRVYAE ENSBTAP00000037611/1-976 AHGWDSINEV DESFQPIHTY QVCNVMSPNQ NNWLRTSWVP RDGARRVYAE 101 150 ENSTTRP00000002340/1-1001 IKFTLRDCNS MPGVLGTCKE TFNLYYLESD RD-GASTQDS QF--IDTXXX bmy_04527T0/1-755 IKFTLRDCNS MPGVLGTCKE TFNLYYLESD RDLGASTQES QFLKIDTIAA BACU018272/1-962 IKFTLRDCNS MPGVLGTCKE TFNLYYLESD RDLGASTQES QFLKIDTIAA ENSP00000166244/1-1005 IKFTLRDCNS MPGVLGTCKE TFNLYYLESD RDLGASTQES QFLKIDTIAA ENSBTAP00000037611/1-976 IKFTLRDCNS MPGVLGTCKE TFNLYYLESD RDLGASTQES QFLKIDTIAA 151 200 ENSTTRP00000002340/1-1001 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLAILSLRIY bmy_04527T0/1-755 DESFTGADLG VRRLKLNTEV RGVGPLSKRG FYLAFQDIGA CLAILSLRIY BACU018272/1-962 DESFTGADLG VRRLKLNTEV RGVGPLSKRG FYLAFQDIGA CLAILSLRIY ENSP00000166244/1-1005 DESFTGADLG VRRLKLNTEV RSVGPLSKRG FYLAFQDIGA CLAILSLRIY ENSBTAP00000037611/1-976 DESFTGADLG VRRLKLNTEV RGVGPLSKRG FYLAFQDIGA CLAILSLRIY 201 250 ENSTTRP00000002340/1-1001 YKKCPTMVRN LARFSEAVTG ADSSSLVEVR GQCVRHSEER DTPKMYCSAE bmy_04527T0/1-755 YKKCPTMVRN LAAFSEAVTG ADSSSLVEVR GQCVRHSEER DTPKMYCSAE BACU018272/1-962 YKKCPTMVRN LAAFSEAVTG ADSSSLVEVR GQCVRHSEER DTPKMYCSAE ENSP00000166244/1-1005 YKKCPAMVRN LAAFSEAVTG ADSSSLVEVR GQCVRHSEER DTPKMYCSAE ENSBTAP00000037611/1-976 YKKCPTMVRN LAAFSEAVTG ADSSSLVEVR GQCVRHSEER DTPKMYCSAE 251 300 ENSTTRP00000002340/1-1001 GEWLVPIGKC VCSAGYEERR DACVACELGF YKSAPGDQLC ARCPPHSHSA bmy_04527T0/1-755 GEWLVPIGKC VCSAGYEERR DACVACELGF YKSAPGDQLC ARCPPHSHSA BACU018272/1-962 GEWLVPIGKC VCSAGYEEQR DACVACELGF YKSAPGDQLC ARCPPHSHSA ENSP00000166244/1-1005 GEWLVPIGKC VCSAGYEERR DACVACELGF YKSAPGDQLC ARCPPHSHSA ENSBTAP00000037611/1-976 GEWLVPIGKC VCSAGYEERR DACVACELGF YKSAPGDQLC ARCPPHSHSA 301 350 ENSTTRP00000002340/1-1001 APAAQACRCD LSYFRAALDP PSAACTRPPS APVNLISSVN GTSVTLEWAP bmy_04527T0/1-755 APAAQACRCD LSYFRAALDP PSAACTRPPS APVNLISSVN GTSVTLEWAP BACU018272/1-962 APAAQACRCD LSYFRAALDP PSAACTRPPS APVNLISSVN GTSVTLEWAP ENSP00000166244/1-1005 APAAQACHCD LSYYRAALDP PSSACTRPPS APVNLISSVN GTSVTLEWAP ENSBTAP00000037611/1-976 APAAQACRCD LSYYRAALDP PSAACTRPPS APVNLISSVN GTSVTLEWAP 351 400 ENSTTRP00000002340/1-1001 PLDRGGRSDI TYNALCRRCP WALGHCETCG GSTRFVPQQT SLVQASLLVA bmy_04527T0/1-755 PLDRGGRSDI TYNAVCRRCP WALGHCETCG SSTRFVPQQT SLVQASLLVA BACU018272/1-962 PLDRGGRSDI TYNAVCRRCP WALGHCETCG SSTRFVPQQT SLVQASLLVA ENSP00000166244/1-1005 PLDPGGRSDI TYNAVCRRCP WALSRCEACG SGTRFVPQQT SLVQASLLVA ENSBTAP00000037611/1-976 PLDRGGRSDI TYNAVCRRCP WALGHCETCG SGTRFVPQQT SLVQASLLVA 401 450 ENSTTRP00000002340/1-1001 NLLAHMNYSF WIEAVNGVSD LSPEPRRAAV VNITTNQAAP SQVVVIRQER bmy_04527T0/1-755 NLLAHMNYSF WIEAVNGVSD LSPEPRRAAV VNITTNQAAP SQVVVIRQER BACU018272/1-962 NLLAHMNYSF WIEAVNGVSD LSPEPRRAAV VNITTNQAAP SQVVVIRQER ENSP00000166244/1-1005 NLLAHMNYSF WIEAVNGVSD LSPEPRRAAV VNITTNQAAP SQVVVIRQER ENSBTAP00000037611/1-976 NLLAHMNYSF WIEAVNGVSD LSPEPRRAAV VNITTNQAAP SQVVVIRQER 451 500 ENSTTRP00000002340/1-1001 AGQTSVSLLW QEPEQPNGII LEYEIKYYEK DKEMQSYSTL KAVTTRATVS bmy_04527T0/1-755 AGQTSVSLLW QEPEQPNGII LEYEIKYYEK DKEMQSYSTL KAVTTRATVS BACU018272/1-962 AGQTSVSLLW QEPEQPNGII LEYEIKYYEK DKEMQSYSTL KAVTTRATVS ENSP00000166244/1-1005 AGQTSVSLLW QEPEQPNGII LEYEIKYYEK DKEMQSYSTL KAVTTRATVS ENSBTAP00000037611/1-976 AGQTSVSLLW QEPEQPNGII LEYEIKYYEK DKEMQSYSTL KAVTTRATVS 501 550 ENSTTRP00000002340/1-1001 GLKPGTRYVF QVRARTSAGC GRFSQAMEVE TGKPR----- ------PRYD bmy_04527T0/1-755 GLKPGTRYVF QVRARTSAGC GRFSQAMEVE TGKPRECREG EGEGAGPGAR BACU018272/1-962 GLKPGTRYVF QVRARTSAGC GRFSQAMEVE TGKPR----- ------PRHD ENSP00000166244/1-1005 GLKPGTRYVF QVRARTSAGC GRFSQAMEVE TGKPR----- ------PRYD ENSBTAP00000037611/1-976 GLKPGTRYVF QVRARTSAGC GRFSQAMEVE TGKPR----- ------PRYD 551 600 ENSTTRP00000002340/1-1001 TRTIVWICLT LITGLVVLLL LVICKKRHCG YSKAFQHSDE EKMHYQNGQA bmy_04527T0/1-755 ARARVVVGRS PL-------- -----HRHCG YSKAFQHSDE EKMHYQNGQA BACU018272/1-962 TRTIVWICLT LIAGLVVLLL LLICKKRHCG YSKAFQHSDE EKMHYQNGQA ENSP00000166244/1-1005 TRTIVWICLT LITGLVVLLL LLICKKRHCG YSKAFQDSDE EKMHYQNGQA ENSBTAP00000037611/1-976 TRTIVWICLT LITGLVVLLL LLICKKRHCG YSKAFQHSDE EKMHYQNGQA 601 650 ENSTTRP00000002340/1-1001 PPPVFLPLHH PPGKIPEPQF YAEPHTYEEP GRAGRGFTRE IEASRIHIEK bmy_04527T0/1-755 PPPVFLPLHH PPGKIPEPQF YAEPHTYEEP GRAGRGFTRE IEASRIHIEK BACU018272/1-962 PPPVFLPLHH PPGKIPEPQF YAEPHTYEEP GRAGRGFTRE IEASRIHIEK ENSP00000166244/1-1005 PPPVFLPLHH PPGKLPEPQF YAEPHTYEEP GRAGRSFTRE IEASRIHIEK ENSBTAP00000037611/1-976 PPPVFLPLHH PPGKIPEPKF YTEPHTYEEP GRTGRGFTRE IEASRIHIEK 651 700 ENSTTRP00000002340/1-1001 IIGSGESGXX XXXXXXXPGQ RDMPVAIKA- KAGYTERQWR DFLSEASIMG bmy_04527T0/1-755 IIGS------ ---------- ---------- ---------- ---------- BACU018272/1-962 IIGSGESGEV CYGRLQVPGQ RDMPVAIKTL KAGYTERQRR DFLSEASIMG ENSP00000166244/1-1005 IIGSGDSGEV CYGRLRVPGQ RDVPVAIKAL KAGYTERQRR DFLSEASIMG ENSBTAP00000037611/1-976 IIGSGESGEV CYGRLRMPGQ RDVPVAIKAL KAGYTERQRR DFLSEASIMG 701 750 ENSTTRP00000002340/1-1001 QFDHPNIIRL EGVVTRGQLA MIVTEYMENG SLDTFLRTHD GQFTIMQLVG bmy_04527T0/1-755 ---------- ------GQLA MIVTEYMENG SLDTFLRVRA PPL------- BACU018272/1-962 QFDHPNIIRL EGVVTRGQLA MIVTEYMENG SLDTFLRTHD GQFTIMQLVG ENSP00000166244/1-1005 QFDHPNIIRL EGVVTRGRLA MIVTEYMENG SLDTFLRTHD GQFTIMQLVG ENSBTAP00000037611/1-976 QFDHPNIIRL EGVVTRGRLA MIVTEYMENG SLDAFLRTHD GQFTIVQLVG 751 800 ENSTTRP00000002340/1-1001 MLRGVGAGMR YLSDLGYVHR DLAARNVLVD GNLVCKVSDF GLSRVLEDDP bmy_04527T0/1-755 LSPGPGEG-- ---------- ---------- ---------- ---------- BACU018272/1-962 MLRGVGAGMR YLSDLGYVHR DLAARNVLVD GNLVCKVSDF GLSRVLEDDP ENSP00000166244/1-1005 MLRGVGAGMR YLSDLGYVHR DLAARNVLVD SNLVCKVSDF GLSRVLEDDP ENSBTAP00000037611/1-976 MLRGVGAGMR YLSDLGYVHR DLAARNVLVD GNLVCKVSDF GLSRVLEDDP 801 850 ENSTTRP00000002340/1-1001 DAAYTTTGGK IPIRWTAPEA IAFRTFSSAS DVWSFGVVMW EVLAYGERPY bmy_04527T0/1-755 ---------- ---------- ---------S SVWMVGD--- ---------- BACU018272/1-962 NAAYTTTGGK IPIRWTAPEA IAFRTFSSAS DVWSFGVVMW EVLAYGERPY ENSP00000166244/1-1005 DAAYTTTGGK IPIRWTAPEA IAFRTFSSAS DVWSFGVVMW EVLAYGERPY ENSBTAP00000037611/1-976 DAAYTTTGGK IPIRWTAPEA IAFRTFSSAS DVWSFGVVMW EVLAYGERPY 851 900 ENSTTRP00000002340/1-1001 WNMTNRDVIS SVEEGYRLPA PMGCPRALHQ LMLDCWHKDR AQRPRFSQIV bmy_04527T0/1-755 -NVRPPDTPS SPELG---PN RPGEGRA--- ---------- ---------- BACU018272/1-962 WNMTNQDVIS SVEEGYRLPA PMGCPRALHQ LMLDCWHKDR AQRPRFSQIV ENSP00000166244/1-1005 WNMTNRDVIS SVEEGYRLPA PMGCPHALHQ LMLDCWHKDR AQRPRFSQIV ENSBTAP00000037611/1-976 WNMTNRDVIS SVEEGYRLPA PMGCPHALHQ LMLDCWHKDR AQRPRFSQIV 901 950 ENSTTRP00000002340/1-1001 SVLDMLIHSP ESLRATATVN RCPPPAFARS CFDLRGGGGG GGGLTVGDWL bmy_04527T0/1-755 ---------- ---------- RCPPPAFARS CFDLRGGGGG GGXLTVGDWL BACU018272/1-962 SVLDTLIHSP ESLRATATVN RCPPPAFARS CFDLRGGGGG GGGLTVGDWL ENSP00000166244/1-1005 SVLDALIRSP ESLRATATVS RCPPPAFVRS CFDLRGGSGG GGGLTVGDWL ENSBTAP00000037611/1-976 SVLDSLIHSP ESLRATATVH RCPPPAFARS CFDLRGGGGG SGGLTVGDWL 951 1000 ENSTTRP00000002340/1-1001 DSIRMGRYRD HFAAGGYSSL GMVLRMNAQD VRALGITLMG HQKKILGSIE bmy_04527T0/1-755 DSIRMGRYRD HFAAGGYSSL GMVLRMNAQ- ---------- ---------- BACU018272/1-962 DSIRMGRYRD HFAAGGYSSL GMVLRMNAQD VRALGITLMG HQKKILGSIQ ENSP00000166244/1-1005 DSIRMGRYRD HFAAGGYSSL GMVLRMNAQD VRALGITLMG HQKKILGSIQ ENSBTAP00000037611/1-976 DSIRMGRYRD HFAAGGYSSL GMVLRMNAQD VRALGITLMG HQKKILGSIQ 1001 1050 ENSTTRP00000002340/1-1001 TMRAQLTSTQ GPHRHL bmy_04527T0/1-755 ---------- ------ BACU018272/1-962 TMRAQLTSTQ GPHRHL ENSP00000166244/1-1005 TMRAQLTSTQ GPRRHL ENSBTAP00000037611/1-976 TMRAQLTSTQ GPRRHL