KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:51 2014 Check: 00 .. Name: ENSP00000333376/1-814 Len: 818 Check: 105 Weight: 1.00 Name: BACU002825/1-127 Len: 818 Check: 1460 Weight: 1.00 Name: ENSBTAP00000037687/1-817 Len: 818 Check: 2615 Weight: 1.00 Name: bmy_18233T0/1-457 Len: 818 Check: 7755 Weight: 1.00 Name: ENSTTRP00000004390/1-816 Len: 818 Check: 8345 Weight: 1.00 // 1 50 ENSP00000333376/1-814 MRVKDPTKAL PEKAKRSKRP TVPHDEDSSD DIAVGLTCQH VSHAISVNHV BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 MRVKEPSKAS PEKAKRSKRP PIPHDEDSSD DVAVGFTCQH ISHAVSVHHV bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 MRVKEPSKAL PEKAKRSRRP TIAHDEDSSD DIAVGFTCQH VSHAISVNHV 51 100 ENSP00000333376/1-814 KRAIAENLWS VCSECLKERR FYDGQLVLTS DIWLCLKCGF QGCGKNSESQ BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 KKAIAENLWS VCLECVKERR FCDGQPVLLP DIWLCLKCGF QGCGKNSEGQ bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 KKAIVENLWS VCLECLKERK FYDGQPVLPS DIWLCLKCGF QGCGKNSESQ 101 150 ENSP00000333376/1-814 HSLKHFKSSR TEPHCIIINL STWIIWCYEC DEKLSTHCNK KVLAQIVDFL BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 HSLKHFKSWR AELHCIIINL STWIIWCYEC DEKLSTHCNK KVLAQIVDFL bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 HSLKHFKSWR AELHCIIISL STWIIWCYEC DEKLSTHCNK KVLAQIVDFL 151 200 ENSP00000333376/1-814 QKHASKTQTS AFSRIMKLCE EKCETDEIQK GGKCRNL-SV RGITNLGNTC BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 QKHVSKTQTS AFSRIIKLCE EKCETGEKNK GRKGGSVTSV KGITNLGNTC bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 QKHVSKTQTN AFSRIIKLYE EKCETGDK-K GRKDSNVTSV KGITNLGNTC 201 250 ENSP00000333376/1-814 FFNAVMQNLA QTYTLTDLMN EIKESSTKLK IFPSSDSQLD PLVVELSRPG BACU002825/1-127 -----MQNLA QSYILTELMN EIKEHGTELK IVPSSDSPLD PLVVELSSPG ENSBTAP00000037687/1-817 FFNAVMQNLA QSYILTELMN EIKEHGTKLK IVPSSDSQLD PLVVELSSPG bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 FFNAVMQNLA QSYILTELMN EIKEHGTKLK IVPSSDSPLD PLVVELSSPG 251 300 ENSP00000333376/1-814 PLTSALFLFL HSMKETEKGP LSPKVLFNQL CQKAPRFKDF QQQDSQELLH BACU002825/1-127 PLTSALFLFL HSMKETERGP LSPKVLFNQL CQKAPGFKSF QQQDSQELLH ENSBTAP00000037687/1-817 PLTSALFLFL HSMKETERGP LSPKVLFNQL CQKAPAFKSF QQQDSQELLH bmy_18233T0/1-457 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004390/1-816 PLTSALFLFL HSMKETERGP LSPRVLFNQL CQKAPGFKSF QQQDSQELLH 301 350 ENSP00000333376/1-814 YLLDAVRTEE TKRIQASILK AFNNPTTKTA DDETRKKVKA YGKEGVKMNF BACU002825/1-127 YLLDAVRTEE TK-------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 YLLDAVRTEE TKRIQAGILK AFNNPTTKTA DDETRKKVKA YGREGVKMNF bmy_18233T0/1-457 ---------- ---------- ---------- ---------- -------MNF ENSTTRP00000004390/1-816 YLLDAVRTEE TKXXXXXXXX XXXXXXXXXX XXXXXXXXXX YGREGVKMNF 351 400 ENSP00000333376/1-814 IDRIFIGELT STVMCEECAN ISTVKDPFID ISLPIIEERV SKPLLWGRMN BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 IDRIFIGELT STVMCEECSN ISTVKDPFID ISLPIIEERV SKPVLLGRIS bmy_18233T0/1-457 IDRIFIGELT STVMCEECAN ISTVKDPFID ISLPIIEERV SKPVLLGRMS ENSTTRP00000004390/1-816 IDRIFIGELT STVMCEECAN ISTVKDPFID ISLPIIEERV SKPVLLGRMS 401 450 ENSP00000333376/1-814 KYRSLRETDH DRYSGNVTIE NIHQPRAAKK HSSSKDKSQL IHDRKCIRKL BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 KYGRLQETDN GQYSGTVPVE NTHQPRAIRK HSLSKDMNQL IHGRKCTRKS bmy_18233T0/1-457 KYRSLQDTDN GH-------- -----KILFS ENTINLQNQL IHGKKRTRKL ENSTTRP00000004390/1-816 KYRSLQDTDN GEYSGTITIE NTHQPRATKK HSSSKDKNQL IHGRKCTRKL 451 500 ENSP00000333376/1-814 SSGE---TVT YQKNENLEMN GDSLMFASLM NSESRLNESP TDDSEKEASH BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 SSGEDKAAVI YQENESLEVN RDSSLFASIM NTELTLTESP TDGSEKEDSL bmy_18233T0/1-457 SSGEDKAVVI YQKNENLEMN RDSSLFASIV NTESTLTESP TDSSEQEASL ENSTTRP00000004390/1-816 SPGEDKTVVI YQKNENLEMN RDSSSFASIV NTESTLTESP TDGSEKEASL 501 550 ENSP00000333376/1-814 SESNVDADSE PSESESASKQ TGLFRSSSGS GVQPDGPLYP LSAGKLLYTK BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 SESSVDADSE ASESESAPKQ TLLLRSRSGY YTHTNGHPHY PSKSEPL-TR bmy_18233T0/1-457 SESSVDADSE ASESESAPKQ TLLLRPSSGC YVHTNGHLRP LSESEPL-TK ENSTTRP00000004390/1-816 SESSVGADSE ASESESAPKQ PLLLRSSSGY FVHTNGHLRH PSESEPL-TK 551 600 ENSP00000333376/1-814 ETDSGDKEMA EAISELRLSS TVTGDQDFDR ENQPLNISNN LCFLEGKHLR BACU002825/1-127 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 EGDHGDEGVA EAISELHLSS TIIRARDFDR ENQPLSVSNN LCFSEDKHMV bmy_18233T0/1-457 EGDGGDEGVA EAISELHLSS TVTGDRDFDR ENQPLNVSNN LCFSEGRHMV ENSTTRP00000004390/1-816 EGDGGDEGVA GAISELHLSS TVTGDRDFDR ENQPLNVSNN LCFSEGKHMV 601 650 ENSP00000333376/1-814 SYSPQNAFQT LSQSYITTSK ECSIQSCLYQ FTSMELLMGN NKLLCENCTK BACU002825/1-127 ---------- ---------- ---------- ---ASWLVGS S--------- ENSBTAP00000037687/1-817 SQSPQNAFQT LSQSYITTSK ECSVQSCLYQ FTSMELLMGN NKLLCENCTE bmy_18233T0/1-457 SYSPQNAFQT LSQSYITTSK ECSIQSCLYQ FTSMELLMGN NKLLCENCTE ENSTTRP00000004390/1-816 SYSPQNAFQT LSQSYITTSK ECSIQSCLYQ FTSMELLMGN NKLLCENCTE 651 700 ENSP00000333376/1-814 NKQKYQEETS FAEKKVEGVY TNARKQLLIS AVPAVLILHL KRFHQAGLSL BACU002825/1-127 ----FPDQRS ---------- ---------- ---------- ---------- ENSBTAP00000037687/1-817 KKQKYQKETT SAEKKAEGVY TNARKQLLIS AVPAILILHL KRFHQAGLSL bmy_18233T0/1-457 KKQKYPKETS SAEKKAGGVY TNARKQLLIS AVPAILILHL KRFHQAGLSL ENSTTRP00000004390/1-816 KKQKYPKETS SAEKKAGGVY TNARKQLLIS AVPAILILHL KRFHQAGLSL 701 750 ENSP00000333376/1-814 RKVNRHVDFP LMLDLAPFCS ATCKNASVGD KVLYGLYGIV EHSGSMREGH BACU002825/1-127 ---------- ---NLCP--- ---------- ---------- ---------- ENSBTAP00000037687/1-817 RKVNRHVDFP LTLDLAPFCS ATCKNVSVGG KVLYGLYGVV EHSGSMKGGH bmy_18233T0/1-457 RKVNRHVDFP LTLDLAPFCS ATCKNVSVGD KVLYGLYGVV EHSGSMRGGH ENSTTRP00000004390/1-816 RKVNRHVDFP LTLDLAPFCS ATCKNVSVGD KVLYGLYGVV EHSGSMRGGH 751 800 ENSP00000333376/1-814 YTAYVKVRTP SRKLSEHNTK KKNVPGLKAA DNESAGQWVH VSDTYLQVVP BACU002825/1-127 ---------- ---------- ---------- -------WQ- ---------- ENSBTAP00000037687/1-817 YTAYVKVRTP SRKLLEYITG KKNVPGLKEP DSESASQWVH VSDTYVQVVP bmy_18233T0/1-457 YTAYVKVRTP SRKLLEHITG KKNVPGLKEP DSESAGQWVH VSDTYVQVVP ENSTTRP00000004390/1-816 YTAYVKVRTP SRKLLEHITG KKNVPGLKEP DSESAGQWVH VSDTYVQVVP 801 850 ENSP00000333376/1-814 ESRALSAQAY LLFYERVL BACU002825/1-127 ---------- -------- ENSBTAP00000037687/1-817 ESRALSAQAY LLFYERIL bmy_18233T0/1-457 ESRALSAQAY LLFYERIL ENSTTRP00000004390/1-816 ESRALSAQAY LLFYERIL