KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:47:52 2014 Check: 00 ..
Name: bmy_05144T0/1-227 Len: 337 Check: 2095 Weight: 1.00
Name: ENSBTAP00000037730/1-336 Len: 337 Check: 1981 Weight: 1.00
Name: ENSP00000348113/1-337 Len: 337 Check: 782 Weight: 1.00
Name: BACU012204/1-313 Len: 337 Check: 1910 Weight: 1.00
Name: ENSTTRP00000003818/1-300 Len: 337 Check: 3833 Weight: 1.00
//
1 50
bmy_05144T0/1-227 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000037730/1-336 -EKMPLFSKS HKNPAEIVKI LRDNLAILEK QDKKTDKASE EVSKSLQAMK
ENSP00000348113/1-337 MKKMPLFSKS HKNPAEIVKI LKDNLAILEK QDKKTDKASE EVSKSLQAMK
BACU012204/1-313 ---------- ---------- ----MAVLEK QDKKTDKASE EVSKSLQAMK
ENSTTRP00000003818/1-300 ---------- ---------- ---------- -------ASE EVSKSLQAMK
51 100
bmy_05144T0/1-227 ------MNK- ---------- ---YHTGLM- ---------- ----------
ENSBTAP00000037730/1-336 EILCGTSDKE PPVEAVAQLS QELYNTGLLV TLIADLQLID FEGKKDVTQI
ENSP00000348113/1-337 EILCGTNEKE PPTEAVAQLA QELYSSGLLV TLIADLQLID FEGKKDVTQI
BACU012204/1-313 EILCGTSDKE PPTEAVAQLA QELYNSGLLV TLIADLQLID FEGKKDVTQI
ENSTTRP00000003818/1-300 EILCGTSDKE PPTEAVAQLA QELYNSGLLV TLIADLQLID FEGKKDVTQI
101 150
bmy_05144T0/1-227 ---------- ---NSVKYLS ----LLFSLL --YETPQIAL RCGIMLRECI
ENSBTAP00000037730/1-336 FNNILRRQIG TRIPTVEYIS AHPHILFMLL KGYEVPQIAL RCGIMLRECI
ENSP00000348113/1-337 FNNILRRQIG TRSPTVEYIS AHPHILFMLL KGYEAPQIAL RCGIMLRECI
BACU012204/1-313 FNNILRRQIG TRSPTVEYIS AHPHILFMLL KGYETPQIAL RCGIMLRECV
ENSTTRP00000003818/1-300 FNNILRRQIG TRSPTVEYIS AHPHILFMLL KGYETPQIAL RCGIMLRECI
151 200
bmy_05144T0/1-227 RHEPLAKIIL FSNQFRDFFK YVELSTFDIA SDAYATFKDL LTRHKVLVAD
ENSBTAP00000037730/1-336 RHEPLAKIIL FSNQFQDFFK YVELSTFDIA SDAFATFKDL LTRHKVLVAD
ENSP00000348113/1-337 RHEPLAKIIL FSNQFRDFFK YVELSTFDIA SDAFATFKDL LTRHKVLVAD
BACU012204/1-313 RHEPLAKIIL FSNQFRDFFK YVELSTFDIA SDAFATFKDL LTRHKVLVAD
ENSTTRP00000003818/1-300 RHEPLAKIIL FSNQFRDFFK YVELSTFDIA SDAFATFKDL LTRHKVLVAD
201 250
bmy_05144T0/1-227 FLEQNYDTIF EDYEKLLQSE NYVTKRQSLK LLGELILDRH NFAIMTKYIS
ENSBTAP00000037730/1-336 FLEQNYDTIF EDYEKLLQSE NYVTKRQSLK LLGELILDRH NFAIMTKYIS
ENSP00000348113/1-337 FLEQNYDTIF EDYEKLLQSE NYVTKRQSLK LLGELILDRH NFAIMTKYIS
BACU012204/1-313 FLEQNYDTIF EDYEKLLQSE NYVTKRQSLK LLGELILDRH NFAIMTKYIS
ENSTTRP00000003818/1-300 FLEQNYDTIF GDYEKLLQSE NYVTKRQSLK LLGELILDRH NFAIMTKYIS
251 300
bmy_05144T0/1-227 KPENLKLMMN LLRDTSPNIQ FEAFHVFKVF VASPHKTQPI VEILLKNQPK
ENSBTAP00000037730/1-336 KPENLKLTMN LLRDKSPNIQ FEAFHVFKVF VASPHKTQPI VEILLKNQPK
ENSP00000348113/1-337 KPENLKLMMN LLRDKSPNIQ FEAFHVFKVF VASPHKTQPI VEILLKNQPK
BACU012204/1-313 KPENLKLMMN LLRDTSPNIQ FEAFHVFKVF VASPHKTQPI VEILLKNQPK
ENSTTRP00000003818/1-300 KPENLKLMMN LLRDKSPNIQ FEAFHVFKVF VASPHKAQPI VEILLKNQPK
301 350
bmy_05144T0/1-227 LIEFLSSFQK ERTDDEQFTD EKNYLIKQIR DLKKTAP
ENSBTAP00000037730/1-336 LIEFLSNFQK ERTDDEQFTD EKNYLIKQIR DLKKVAP
ENSP00000348113/1-337 LIEFLSSFQK ERTDDEQFAD EKNYLIKQIR DLKKTAP
BACU012204/1-313 LIEFLSSFQK ERTDDEQFTD EKNYLIKQIR DLKKTAP
ENSTTRP00000003818/1-300 LIEFLSSFQK ERTDDEQFTD EKNYLIKQIR DLKKTAP