KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:54 2014 Check: 00 .. Name: ENSP00000433931/1-787 Len: 1731 Check: 4316 Weight: 1.00 Name: ENSBTAP00000037755/1-1553 Len: 1731 Check: 9676 Weight: 1.00 Name: bmy_02020T0/1-1696 Len: 1731 Check: 9346 Weight: 1.00 Name: BACU018242/1-1553 Len: 1731 Check: 4608 Weight: 1.00 Name: ENSTTRP00000000589/1-616 Len: 1731 Check: 3146 Weight: 1.00 // 1 50 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ---------- ---------- ---------- ---------- ---------- bmy_02020T0/1-1696 MSGIRVAPAA RDRSGVLTPR AWDLALAMAE RRGSLGARLA RRLARLGVRR BACU018242/1-1553 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ---------- ---------- ---------- ---------- ---------- bmy_02020T0/1-1696 ECKGKPIPEK ARSRDRRTRY HITVTLQGRG QAPGEETEEP KPARPAPHPC BACU018242/1-1553 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ---------- ---------- ---------- ---------- ---------- bmy_02020T0/1-1696 GPEESRGWQE PPQGPRPITG CLVDLPQEPR LRAPPHQGST AQRQELQAGQ BACU018242/1-1553 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ---------- ---------- ------MEEA SGPPAEAKAR VVSTTLTWRQ bmy_02020T0/1-1696 MPGSPHRCEL DHSEPRTPQD PLLGPNTDEA SGPPARAKAR VVSTSLTWGQ BACU018242/1-1553 ---------- ---------- -------DEA SGPPARAKAR VVSTSLTWGQ ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 RPPAQDEVKH RFHKVSLVSG AQSEAPSEET SESSHRREEV NGFAVREEET bmy_02020T0/1-1696 WPPAQEESKH RFHKVSLVSG ARLEVPQEEM SENGHRREEV NGFAAREEET BACU018242/1-1553 WPPAQEESKH RFHKVSLVSG ARLEVPQEEM SENGHRREEV NGFAAREEET ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 VNHQGPRDGA GSKSFQSHGP IFSKKYTLPL KEKRPVGRLK EAAEQGDGSP bmy_02020T0/1-1696 MNHQGPGDGA GSKSFQSHGP IFSKKYTLPP KEKRPVGRPK EAVDQGDGSP BACU018242/1-1553 MNHQGPGDGA GSKSFQSHGP IFSKKYTLPP KEKRPVGRPK EAVDQGDGSP ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 QPPRTEPPSA GVTARTELSV PAHGPREPSP HPGVSFTSGS SRSLEERRVT bmy_02020T0/1-1696 QDPRTEPPSP GATAKSECLA PVHGPHEPRP NPGVSLTSRS SRSLEERRVR BACU018242/1-1553 QDPRTEPLSP GATAKTECLA PVHGPHEPRP NPGVSLTSRS SRSLKERRVT ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 RTVRTTVMVG GHVDRRVNST VINSVGPALV GEALPRGRNA ARAVRAVVVN bmy_02020T0/1-1696 RAVRTTMAVG GQVDRQVNSS VTNSVGLTLP GKALPRGRNA ARMVQAVVVS BACU018242/1-1553 CAVRTTMVVG GHVDRQVNSS VTNSVGLTLP GKALPRGRNA ARVVQAVVVS ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 PRAEGSPSRS QALELLSSLV PTERTAPTSR LPRPLAAVPR SPDLGSTEGS bmy_02020T0/1-1696 PRAEDSPSRS QALELLSRLV PAGWSPPASR FPRPLAAVTR SPGLGSTEGA BACU018242/1-1553 PRAEDSPSRS QALELLSSLV PAGRSPPASR LPRPLAAVTR SPGLGSTEGA ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ALRQLPETRT AEPKDRSAPG PAGFLEEAHP TPSQEVPAAH PDQEQDRTLG bmy_02020T0/1-1696 APGQLPETAT AEPEDRSVLA PVGFPDYAHL PQNQDVPATH PDRDQDKAPD BACU018242/1-1553 APGQLPETGT SEPEDRSVLA PVGFPDYAHP PQNQDVPATH PDRDQDKAPD ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 AGVHEVPRVQ RPASPTQSPL QTSQGHTPVP SSPRLQTRTL SLDLVQPPEQ bmy_02020T0/1-1696 ARIHEVPRVQ RASSPTQLPL QTSQGHTPVP SSPRLQTQTP SLGLGHPPEQ BACU018242/1-1553 ARIHEVPRVQ RKSSPTQLPL QTSQGQTPVP SSPRLQTQTP SLGLGHPPEQ ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 PEAPTQARAQ LTLKPQGPQA LPSIKREGLS DPPAATVLPM VKTEVVIVPG bmy_02020T0/1-1696 PEVPTHARAQ LTLKPRGPQA WPSVKTEGHP DPPAATSLPT VKTAAVIVPG BACU018242/1-1553 PEVPTHARAQ LTLKPRGPQA WPSVKTEGHP DPPAATSLPT VKTEAVIVPG ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 QSLAPSSMRW KAITSPGGLS APSSPKNKVV QDSEKVPVVS LTQKEIVQGP bmy_02020T0/1-1696 QSLAPSSTRR KAVTSPGGLS APFSPRNKVV QDSENVPIFS LTQKEVVQSP BACU018242/1-1553 QSLAPSSTRR KAVTSPGGLS APSSPRNKVV QDSENVPIFS LTQKEGGQSP ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 GVPADSSPNQ KEVVQGRSAP AASGPKPTNV AQGPEVSLIS QKEVVWSTAG bmy_02020T0/1-1696 GVPADSTPTQ KEVVQGPSAP AASSPKATKV AQAPEGSPST QKEVVQSTEG BACU018242/1-1553 GVPADSTPAQ KEGVQGPSAP AASSPKATKV AQAPEGSPST QKEVVQSTEG ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 SPVPPLPKEE AAQGLTIPAV PSPKQEKVVQ GSEESIVSSP TQKEVVQDPD bmy_02020T0/1-1696 SLAPPLTKEE AGQGLTAPAV PSPKQEREVQ DSEESPISSP TQKEVVQGPG BACU018242/1-1553 SLAPPLTKEE AGQGLTAPAV PSPKQEREVQ DSEESPISSP TQKEVVQGPG ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 ASNVPSSTQK VAVQAPATLI APSSSVGKVS SGPGGPPAPV MMGAETSQES bmy_02020T0/1-1696 ASTVPYSTQK VVVQGPTALI APSSSGGKVS LSPGGPPAPR LMGAEASLES BACU018242/1-1553 ASTVPYSTQK VVVQGPTALI APSSSGGEVS LSPGGPPAPR LMGAEASLES ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 QLVPEATKDK TFLEPSREEE EVALTADLEI FLDTLRSMEP PEILRTHRLP bmy_02020T0/1-1696 QLVPDSAEGK TFPEPSREEE EVALTADLEI FLDTLRSMEP PEILRTHRLP BACU018242/1-1553 QLVPDSTEGK TFPEPSREEE EVALTADLEI FLDTLRSMEP PEILRTQRLP ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000037755/1-1553 RAPRSSYLAM YATLPAIEED QPGPCVLGPS PQEVPALEVK KEEKAQEEE- bmy_02020T0/1-1696 RAPRSSYLAI YATLPAIEED QPGPWVLGPS PQGVPALEEN EEEKGEEEEE BACU018242/1-1553 RAPRSSYLAI YATLPAIEED QPGPWVLGPS PQGVPALEEN EEEKGEEEED ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000433931/1-787 ---------- ---------- ---------- ---------- ----MMKKHV ENSBTAP00000037755/1-1553 EEEPENPYLS DDEKLQRRQE RARLGPPRDP SPARPTQVSC SPLEMMKKHV bmy_02020T0/1-1696 EEEPQNPYLS DSEKLQLRQE KARPSPSWES HPARPPQVSC SLLEMMRKHT BACU018242/1-1553 EEEPQNPYLS DSEKLQLRQE KARPSPACDS HPARSPQVSC SLLEMMKKHT ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000433931/1-787 AGTKGPHSEL GLELQGGSRP TSRLGGSLLF GSLVPTAKEA STPEPLGTKL ENSBTAP00000037755/1-1553 AGAKGPHPEP GPEWQAGSRP TSRLGGSLLF GGLVPALKEA PTSEPLGTKL bmy_02020T0/1-1696 AGAKGAHPEV GPEQQAGSRL TSRLGCSLLF -----APKEA PTLEPLGTKP BACU018242/1-1553 AGAKGAHPEV GPERQAGSRP TSRLGCSLLF GGLVPALKEA PTLEPLGTKA ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000433931/1-787 SALLPHGAPG LRKVPGQLPL LCSERSSPTE KLACSLPLEG WSPALKTQGK ENSBTAP00000037755/1-1553 SALQPHRAPG LKKGPGQLPL LYSERPPP-E KPARARPPEG WSPALKTQGK bmy_02020T0/1-1696 SALPPHGAPG LKKVRGQLPL LYRERPPP-E KPACAQPPEG WSSALKTQGK BACU018242/1-1553 SALPPHGAPG LKKVPEQLPL LYRERPPP-E KPACAQPPEG WSSALKTQGK ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000433931/1-787 LNTRPGKVIF FSESGCQGSG REVWGDIVDA SGWAPVASIR VVRGCWVLYE ENSBTAP00000037755/1-1553 LNTRPGKIIL FSEPGCQGSR REVWEDADDA SGWARVASVR VVRGCWVLHE bmy_02020T0/1-1696 LNTRPGKMIL FSEPGCQGSS REVWEDTADA SGWARVASIR VVRGCWVLYE BACU018242/1-1553 LNTRPGKMIL FSEPGCQGSS REVWEDTADA SGWARVASIR VVRGCWVLYE ENSTTRP00000000589/1-616 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000433931/1-787 EPEFRGQKLV LPEGDMELRT PGTKWSPQGI GSLRRVVWDY STPEISLFSE ENSBTAP00000037755/1-1553 QPGFQGQKLV LPQGDMELGA PGSAWSSQGI GSLRRVVRDY ITPEISLYSE bmy_02020T0/1-1696 EPAFQGQKLV LPEGDVELGA LGPAWSTQGI GSLRRVVR-- ---------- BACU018242/1-1553 EPAFRGQKLV LPEGDVELGA LGPAWSTQGI GSLRRVVRDY ITPEISLYSE ENSTTRP00000000589/1-616 ---------- -----VELGA LWPAWSTQAI GSLRRVVRDY ITPEISLYSE 1151 1200 ENSP00000433931/1-787 EGLKGEQVKL TEALKNSQGL EKPLQVASAT VSAGLWLLYP KPLFEDTPYI ENSBTAP00000037755/1-1553 EGLKGEQVKL TEALEDPQGL ERPLQMASAT VSAGLWLLYP KPFFEDTPCI bmy_02020T0/1-1696 -------VQL LE-----RTL SRCVQLERAR -----WLLYP KPFFEDTPCI BACU018242/1-1553 EGLNGEQVKL TKALEDPQGL ERPLQVASAT VSAGLWLLYP KPFFEDTPCI ENSTTRP00000000589/1-616 EGLKGEQVKL SKALEDPQGL ERPLQVASAT VSAGLWLLYP KPFFEDTPCI 1201 1250 ENSP00000433931/1-787 LEPGEYPTSE AWGTSDPSVG SLKPMRLGCP SVEKPGEPRA VVYEAPGFQG ENSBTAP00000037755/1-1553 LEPGEYPTSE AWGASDPSMG SLKPMRLGCP SVERPGEPKA VVYEAPGFQG bmy_02020T0/1-1696 LEPGEYPTPE AWCASDPSVG SLKPMRLGCP RVEKPGEPKA VVYEAPGFQG BACU018242/1-1553 LEPGEYPTPE AWGASDPSVG SLKPMRLGCP RVEKPGEPKA VVYEAPGFQG ENSTTRP00000000589/1-616 LEPGEYPTPE AWGASDPSVG SLKPMRLGCP SVEKPGEPKA VVYEAPGFQG 1251 1300 ENSP00000433931/1-787 RSWEVSRDIY NLQQPEDSQS PHLASVGSLR VLGGCWVGYE KEGFRGHQYL ENSBTAP00000037755/1-1553 RSWEVNRDIY NLQQPEDSQS PNLASVGSLR VLGGCWVGYE KEGFRGHQYL bmy_02020T0/1-1696 QSWEVSRDIY NLQQPEDSQS PSLASVGSLQ VLGGCWVGYE KEGFRGHQYL BACU018242/1-1553 QSWEVSRDIY NLQQPEDSQS PSLASVGSLQ VLGGCWVGYE KEGFRGHQYL ENSTTRP00000000589/1-616 QSWEVSRDIY NLQQPEDGQS PSLASVGSLQ VLGGCWVGYE KEGFRGHQYL 1301 1350 ENSP00000433931/1-787 LEEGEYPDWS HWGGYDELLT SLRVIRTDFG DPAVVLFEAM DFEGHGVEVS ENSBTAP00000037755/1-1553 LEEGEYTDWS RWGGYNEVLT SLRVIRTDFG DPAVVLFEAM DFEGPGVEVS bmy_02020T0/1-1696 LEEGEYADWS HWGGYNKALT SLRVIRTDFG DPAVVLFEAM DFEGHGVEVS BACU018242/1-1553 LEEGEYADWS HWGGYNKALT SLRVIRTDFG DPAVVLFEAM DFEGHGVEVS ENSTTRP00000000589/1-616 LEEGKYADWS HWGGYNKALT SLRVIRTDFG DPEVVLFEAM DFEGHGVEVS 1351 1400 ENSP00000433931/1-787 KALPDVELVQ HGPSTQAIHV LSGVWVAYQE VGFSGEQYVL EKGVYRNCED ENSBTAP00000037755/1-1553 EALPDVELAG HGPRTQAIHV LSGVWVAYQE VGFSGEQYVL EKGVYRNCDD bmy_02020T0/1-1696 EALPDVELAG HGPRTQAIHV LSGVWVAYQE VGFSGEQYVL EKGVYRNCDD BACU018242/1-1553 EALPDVELAG HGPRTQAIHV LSGVWVAYQE VGFSGEQYVL EKGVYRNCDD ENSTTRP00000000589/1-616 EALPDVQLAG HGPRTQAIHV LSGVWVAYEE VGFSGEQYVL EKGVYRNCDD 1401 1450 ENSP00000433931/1-787 WGAGNSTLAS LQPVLQVGEH DLHFVSKIQL FSRPDFLGDH FSFEDDQAAL ENSBTAP00000037755/1-1553 WGSGNSALAS LQPVLQVGEH NLHFISKIQL FSGPDFLGDH ISFEDDQSSL bmy_02020T0/1-1696 WGSSNSALAS LQPVLQVGAH NPHFVSKIQL FSGPDFLGDH ISFEDDQTSL BACU018242/1-1553 WGSSNSALAS LQPVLQVGAH NLHFVSKIQL FSGPDFLGDH ISFEDDQTSL ENSTTRP00000000589/1-616 WGASNSALAS LQPVLQVGEH SMHFVSKIQL FSGPDFLGDH ISFEDDQTSL 1451 1500 ENSP00000433931/1-787 PASFRPQSCR VHGGSWILFD ETNFEGDQHI LSEGEFPTLT AMGCLASTVL ENSBTAP00000037755/1-1553 PTSFQPQSCR VHGGSWILFD EKNFEGEQYI LSEGEFPTLT AMGCLASTVL bmy_02020T0/1-1696 PPSFQPQSCR VHGGSWILFD EKNFEGEQHI LSEGEFPTLT AMGCLASTVL BACU018242/1-1553 PPSFQPQSCR VLGGSWILFD EKNFEGEQHI LSEGEFPTLT AMGCLASTVL ENSTTRP00000000589/1-616 PPSFQPQSCR VHGGSWILFD EKNFEGEQHI LSEGEFPTLT AMGCLASTVL 1501 1550 ENSP00000433931/1-787 GSLQKVSLHF SEPSIFLYGL ECFEGKEIEL SREVRSLQAE GFNNHVLSVR ENSBTAP00000037755/1-1553 GSLRKVPLYF SEPSIFLYGL ECFEGKEIEL SGEVRSLQAE GFNNHVLSVR bmy_02020T0/1-1696 GSLRKVPLHF SEPSIFLYGL ECFEGKEIEL GGELRSLQAE GFNNHVLSVR BACU018242/1-1553 GSLRKVPLHF SEPSIFLYGL ECFEGKEIKL GGELRSLQAE GFNNHVLSMR ENSTTRP00000000589/1-616 GSLQKVPLHF SEPSIFLYGL ECFEGKEIEL SGELRSLQAE GFNNHVLSVR 1551 1600 ENSP00000433931/1-787 IKGGIWVLCE HSDFRGRQWL VGSCEITNWL TYSGTQRVGS LYPIKQRRVY ENSBTAP00000037755/1-1553 IKGGVWVLCE HSDFRGRQWL VGSCEITNWL TYSGTQRVGS LYPIKQRRAY bmy_02020T0/1-1696 IKGGVWVLCQ HSDFRGRQWL VGSCEITSWL TYSGTQRVGS LYPIKQRRAY BACU018242/1-1553 IKGGVWVLCQ HSDFRGRQWL VGSCEITSWL TYSGTQRVGS LYPIKQRRAY ENSTTRP00000000589/1-616 IKGGFWVLCQ HSDFRGRQWL VGSCEITNWL TYSGTQRVGS LYPIKQRRAY 1601 1650 ENSP00000433931/1-787 FRLWNAALGG FLAVPDHVED MKAGRVVVAD PQAGGSCIWY YEDGLLKNQM ENSBTAP00000037755/1-1553 FRLWNAALGG FLTVPDHVED MKAGRVVVSE PQAGGSNIWF YEDGLLKNQV bmy_02020T0/1-1696 FHLWNAALGG FLAVPDHVED MKAGRVVVSE PQAAGNCIWY YEDGLLKNQV BACU018242/1-1553 FHLWNAALGG FLAVPDHVED MKAGRVVVSE PQAGGSCIWY YEDGLLKNQV ENSTTRP00000000589/1-616 FHLWNAALGG FLAVPDHVED MKAGRVVVSE PQAGGSCIWY YEDGLLKNQV 1651 1700 ENSP00000433931/1-787 APTMSLQVIG PPSPGSKVVL WAESRLPRQT WSISESGHIC SQMFEGQILD ENSBTAP00000037755/1-1553 APTMSLQVIG PPSTGSKVVL WAESRLPRQT WSISELGYIC SHMFEGRILD bmy_02020T0/1-1696 APTMSLQVIG IPSTGSKVVL WAESRLPRQT WSINESGHIC SQMFEGWILD BACU018242/1-1553 APTMSLQVIG TPSTGSKVVL WAESRLPRQT WSINESGHIC SQMFEGRILD ENSTTRP00000000589/1-616 APTMSLQVIG TPSTGSKVVL WAESRLPRQT WSISESGHIC SQMFEGRILD 1701 1750 ENSP00000433931/1-787 VKGGRGYDRD HVVLWEPDED RASQIWTIHV L ENSBTAP00000037755/1-1553 VKGGRGYDRD HAVLWELAKD RASQIWTVHV L bmy_02020T0/1-1696 VKGGQGYDRD HAVLWELAKD RASQIWTVHV L BACU018242/1-1553 VKGGQGYDRD HAVLWELAKD RPSQIWTVHV L ENSTTRP00000000589/1-616 VKGGQGYDRD HAVLWELAKD RASQIWTVRV L