KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:47:56 2014 Check: 00 .. Name: bmy_05039T0/1-570 Len: 804 Check: 9697 Weight: 1.00 Name: BACU017953/1-785 Len: 804 Check: 8735 Weight: 1.00 Name: ENSP00000452871/1-772 Len: 804 Check: 3758 Weight: 1.00 Name: ENSTTRP00000002570/1-768 Len: 804 Check: 2821 Weight: 1.00 Name: ENSBTAP00000037784/1-769 Len: 804 Check: 6074 Weight: 1.00 // 1 50 bmy_05039T0/1-570 ----MAQGRW VG-------- ------CPRG PPFRPAELTP AWGRPALQAP BACU017953/1-785 MTRPASSSKL PGLALAVGLG LTDELDAPHQ PGQPGFKFTV AESCDRIKDE ENSP00000452871/1-772 ---MYPQGRH P--------- ------APHQ PGQPGFKFTV AESCDRIKDE ENSTTRP00000002570/1-768 ---MYPQGRH P--------- ------APHQ PGQPGFKFTV AESCDRIKDE ENSBTAP00000037784/1-769 ---MYPQGRH P--------- ------APHQ PGQPGFKFTV AESCDRIKDE 51 100 bmy_05039T0/1-570 PQWLRPP--S LPPGFLGLVS RSSD---PYM IEF---IGPP LPPVSPPVPY BACU017953/1-785 FQFLQAQYHS LKVEYDKLAN EKTEMQRHYV MYYEMSYGLN IEMHKQTEIA ENSP00000452871/1-772 FQFLQAQYHS LKVEYDKLAN EKTEMQRHYV MYYEMSYGLN IEMHKQTEIA ENSTTRP00000002570/1-768 FQFLQAQYHS LKVEYDKLAN EKTEMQRHYV MYYEMSYGLN IEMHKQTEIA ENSBTAP00000037784/1-769 FQFLQAQYHS LKVEYDKLAN EKTEMQRHYV MYYEMSYGLN IEMHKQTEIA 101 150 bmy_05039T0/1-570 PRASVVGRGR RPPLTHTRSL QHQQQVAQAV ERAKQVTMTE LNAIIGVRGL BACU017953/1-785 KRLNTILAQI MPFLSQ---- EHQQQVAQAV ERAKQVTMTE LNAIIG---- ENSP00000452871/1-772 KRLNTILAQI MPFLSQ---- EHQQQVAQAV ERAKQVTMTE LNAIIG---- ENSTTRP00000002570/1-768 KRLNTILAQI MPFLSQ---- EHQQQVAQAV ERAKQVTMTE LNAIIG---- ENSBTAP00000037784/1-769 KRLNTILAQI MPFLSQ---- EHQQQVAQAV ERAKQVTMTE LNAIIG---- 151 200 bmy_05039T0/1-570 PNLPLTQQQL QAQHLSHATH GPPVQLPPHP SGLQPPGIPP VTGSSSGLLA BACU017953/1-785 ------QQQL QAQHLSHATH GPPVQLPPHP SGLQPPGIPP VTGSSSGLLA ENSP00000452871/1-772 ------QQQL QAQHLSHATH GPPVQLPPHP SGLQPPGIPP VTGSSSGLLA ENSTTRP00000002570/1-768 ------QQQL QAQHLSHATH GPPVQLPPHP SGLQPPGIPP VTGSSSGLLA ENSBTAP00000037784/1-769 ------QQQL QAQHLSHATH GPPVQLPPHP SGLQPPGIPP VTGSSSGLLA 201 250 bmy_05039T0/1-570 LGALGSQAHL ---------- ---------S NNSVSPSESL RASEKHRGSA BACU017953/1-785 LGALGSQAHL SVKDEKNHHE LDHRERESST NNSVSPSESL RASEKHRGSA ENSP00000452871/1-772 LGALGSQAHL TVKDEKNHHE LDHRERESSA NNSVSPSESL RASEKHRGSA ENSTTRP00000002570/1-768 LGALGSQAHL SVKDEKNHHE LDHRD----T NNSVSPSESL RASEKHRGSA ENSBTAP00000037784/1-769 LGALGSQAHL SVKDEKNHHE LDHRERESSA NNSVSPSESL RASEKHRGSA 251 300 bmy_05039T0/1-570 DYSMEAKKRK AEEKDSLSRY DSDGDKSDDL VVDVSNEDPA TPRVSPAHSP BACU017953/1-785 DYSMEAKKRK AEEKDSLSRY DSDGDKSDDL VVDVSNEDPA TPRVSPAHSP ENSP00000452871/1-772 DYSMEAKKRK AEEKDSLSRY DSDGDKSDDL VVDVSNEDPA TPRVSPAHSP ENSTTRP00000002570/1-768 DYSMEAKKRK AEEKDSLSRY DSDGDKSDDL VVDVSNEDPA TPRVSPAHSP ENSBTAP00000037784/1-769 DYSMEAKKRK AEEKDSLSRY DSDGDKSDDL VVDVSNEDPA TPRVSPAHSP 301 350 bmy_05039T0/1-570 PENGLDKARG LKKDAPTSPA SVASSSSTPS SKTKDLGHND KSSTPGLKSN BACU017953/1-785 PENGLDKARG LKKDAPTSPA SVASSSSTPS SKTKDLGHND KSSTPGLKSN ENSP00000452871/1-772 PENGLDKARS LKKDAPTSPA SVASSSSTPS SKTKDLGHND KSSTPGLKSN ENSTTRP00000002570/1-768 PENGLDKARG LKKDAPTSPA SVASSSSTPS SKTKDLGHND KSSTPGLKSN ENSBTAP00000037784/1-769 PENGLDKARG LKKDAPTSPA SVASSSSTPS SKTKDLGHND KSSTPGLKSN 351 400 bmy_05039T0/1-570 TPTPRNDAPT PGTSTTPGLR SMPGKPPGMD QIGIM----- ---------- BACU017953/1-785 TPTPRNDAPT PGTSTTPGLR SMPGKPPGMD PIGIMASALR TPISITSSYA ENSP00000452871/1-772 TPTPRNDAPT PGTSTTPGLR SMPGKPPGMD PIGIMASALR TPISITSSYA ENSTTRP00000002570/1-768 TPTPRNDAPT PGTSTTPGLR SMPGKPPGMD PIGIMASALR TPISITSSYA ENSBTAP00000037784/1-769 TPTPRNDAPT PGTSTTPGLR SMPGKPPGMD P---LASALR TPISITSSYA 401 450 bmy_05039T0/1-570 ---------- ---------- --GRHD---- ---------- ---------- BACU017953/1-785 APFAMMSHHE MNGSLPSPSA YAGLHNIPPQ MSAAAAAAAA AYGRSPM--- ENSP00000452871/1-772 APFAMMSHHE MNGSLTSPGA YAGLHNIPPQ MSAAAAAAAA AYGRSPMVSF ENSTTRP00000002570/1-768 APFAMMSHHE MNGSLTSPSA YAGLHNIPPQ MSAAAAAAAA AYGRSPMVSF ENSBTAP00000037784/1-769 APFAMMSHHE MNGSLTSPSA YAGLHNIPPQ MSAAAAAAAA AYGRSPMVSF 451 500 bmy_05039T0/1-570 ---------- --GAGLTI-- --------AY SFHVSADGQM QPVPFPHDAL BACU017953/1-785 --VGFDPHPP MRATGLPSSL ASIPGGKPAY SFHVSADGQM QPVPFPHDAL ENSP00000452871/1-772 GAVGFDPHPP MRATGLPSSL ASIPGGKPAY SFHVSADGQM QPVPFPHDAL ENSTTRP00000002570/1-768 GAVGFDPHPP MRATGLPSSL ASIPGGKPAY SFHVSADGQM QPVPFPHDAL ENSBTAP00000037784/1-769 GAVGFDPHPP MRATGLPSSL ASIPGGKPAY SFHVSADGQM QPVPFPHDAL 501 550 bmy_05039T0/1-570 AGPGIPRHAR QINTLSHGEV VCAVTISNPT RHVYTGGKGC VKIWDISQPG BACU017953/1-785 AGPGIPRHAR QINTLSHGEV VCAVTISNPT RHVYTGGKGC VKIWDISQPG ENSP00000452871/1-772 AGPGIPRHAR QINTLSHGEV VCAVTISNPT RHVYTGGKGC VKIWDISQPG ENSTTRP00000002570/1-768 AGPGIPRHAR QINTLSHGEV VCAVTISNPT RHVYTGGKGC VKIWDISQPG ENSBTAP00000037784/1-769 AGPGIPRHAR QINTLSHGEV VCAVTISNPT RHVYTGGKGC VKIWDISQPG 551 600 bmy_05039T0/1-570 SKSPISQLDC LNRDNYIRSC KLLPDGRTLI VGGEASTLTI WDLASPTPRI BACU017953/1-785 SKSPISQLDC LNRDNYIRSC KLLPDGRTLI VGGEASTLTI WDLASPTPRI ENSP00000452871/1-772 SKSPISQLDC LNRDNYIRSC KLLPDGRTLI VGGEASTLTI WDLASPTPRI ENSTTRP00000002570/1-768 SKSPISQLDC LNRDNYIRSC KLLPDGRTLI VGGEASTLTI WDLASPTPRI ENSBTAP00000037784/1-769 SKSPISQLDC LNRDNYIRSC KLLPDGRTLI VGGEASTLTI WDLASPTPRI 601 650 bmy_05039T0/1-570 KAELTSSAPA CYALAISPDA KVCFSCCSDG NIAVWDLHNQ TLVRLGTGGS BACU017953/1-785 KAELTSSAPA CYALAISPDA KVCFSCCSDG NIAVWDLHNQ TLVRQFQGHT ENSP00000452871/1-772 KAELTSSAPA CYALAISPDA KVCFSCCSDG NIAVWDLHNQ TLVRQFQGHT ENSTTRP00000002570/1-768 KAELTSSAPA CYALAISPDA KVCFSCCSDG NIAVWDLHNQ TLVRQFQGHT ENSBTAP00000037784/1-769 KAELTSSAPA CYALAISPDA KVCFSCCSDG NIAVWDLHNQ TLVRQFQGHT 651 700 bmy_05039T0/1-570 GGPRPRE--- --------GL AG--RAWYL- ---------- ---------- BACU017953/1-785 DGASCIDISH DGTKLWTGGL DNTVRSWDLR EGRQLQQHDF TSQIFSLGYC ENSP00000452871/1-772 DGASCIDISH DGTKLWTGGL DNTVRSWDLR EGRQLQQHDF TSQIFSLGYC ENSTTRP00000002570/1-768 DGASCIDISH DGTKLWTGGL DNTVRSWDLR EGRQLQQHDF TSQIFSLGYC ENSBTAP00000037784/1-769 DGASCIDISH DGTKLWTGGL DNTVRSWDLR EGRQLQQHDF TSQIFSLGYC 701 750 bmy_05039T0/1-570 ---------- ---------- ---------- ---------- --CCBWPVR- BACU017953/1-785 PTGEWLAVGM ESSNVEVLHH TKPDKYQLHL HESCVLSLKF AYCGKWFVST ENSP00000452871/1-772 PTGEWLAVGM ESSNVEVLHH TKPDKYQLHL HESCVLSLKF AYCGKWFVST ENSTTRP00000002570/1-768 PTGEWLAVGM ESSNVEVLHH TKPDKYQLHL HESCVLSLKF AYCGKWFVST ENSBTAP00000037784/1-769 PTGEWLAVGM ESSNVEVLHH TKPDKYQLHL HESCVLSLKF AYCGKWFVST 751 800 bmy_05039T0/1-570 ------GAVG RPEQRGRGHP GEKTACARCP A--------- ---------- BACU017953/1-785 GKDNLLNAWR TPYGASIFQS KESSSVLSCD ISADDKYIVT GSGDKKATVY ENSP00000452871/1-772 GKDNLLNAWR TPYGASIFQS KESSSVLSCD ISADDKYIVT GSGDKKATVY ENSTTRP00000002570/1-768 GKDNLLNAWR TPYGASIFQS KESSSVLSCD ISADDKYIVT GSGDKKATVY ENSBTAP00000037784/1-769 GKDNLLNAWR TPYGASIFQS KESSSVLSCD ISADDKYIVT GSGDKKATVY 801 850 bmy_05039T0/1-570 ---- BACU017953/1-785 EVIY ENSP00000452871/1-772 EVIY ENSTTRP00000002570/1-768 EVIY ENSBTAP00000037784/1-769 EVIY