KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:02 2014 Check: 00 .. Name: ENSP00000357594/1-315 Len: 320 Check: 6370 Weight: 1.00 Name: ENSBTAP00000037863/1-316 Len: 320 Check: 4751 Weight: 1.00 Name: ENSTTRP00000015687/1-176 Len: 320 Check: 7041 Weight: 1.00 Name: bmy_06851T0/1-316 Len: 320 Check: 9846 Weight: 1.00 Name: BACU014238/1-316 Len: 320 Check: 9642 Weight: 1.00 // 1 50 ENSP00000357594/1-315 MEKFRAVLDL HVKHHSALGY GLVTLLTAGG ERIFSAVAFQ CPCSAAWNLP ENSBTAP00000037863/1-316 MEKFREVLNL HLKHRNALGY CLVSLLTAGG ERIFSTTVFQ CPCSVAWNLP ENSTTRP00000015687/1-176 MEKFRAVLDL HLKHRNTLGY VLVSLLTVGG ERIFSTAVFQ CPCSDAWNLP bmy_06851T0/1-316 MEKFRAVLDL LLKHRNALGY GLVSLLTAGG ERIFSTAVFQ CPCSAAWNLP BACU014238/1-316 MEKFRAVLDL LLKHRNALGY GLVSLLGAGG ERIFSTAVFQ CPCSAAWNLP 51 100 ENSP00000357594/1-315 YGLVFLLVPA LALFLLGYVL SARTWRLLTG CCSS-ARASC GSALRGSLVC ENSBTAP00000037863/1-316 YGLVFLLVPA LALFLLGYVL SARTWRLLTG CCAR----SC GSGLRGALVC ENSTTRP00000015687/1-176 YGLVFLLVPA LALFLLGYVL SARTWRLLTG CCAPGARTGC GAALRGALVC bmy_06851T0/1-316 YGLVFLLVPA LALFLLGYVL SARTWRLLTG CCAPGARTDC GAVLRGALVC BACU014238/1-316 YGLVFLLVPA LALFLLGYVL SARTWRLLTG CCAPGARTDC GAALRGALVC 101 150 ENSP00000357594/1-315 TQISAAAALA PLTWVAVALL GGAFYECAAT GSAAFAQRLC LGRNRSCAAE ENSBTAP00000037863/1-316 AQISATAAVA PLTWVAVALL GGAFYECAAS GSEVLARYLC VGRDPRCAAQ ENSTTRP00000015687/1-176 AQLSAVAAVA PLTWVAVALL GGSFYECAAS GSAFVARRLC FGRSPGCADQ bmy_06851T0/1-316 AQLSAVAAVA PLTWVAVALL GGSFYECAAS GSAFVARRLC FGRSPGCAAQ BACU014238/1-316 AQLSAVAAVA PLTWVAVALL GGSFYECAAT GSAFVARRLC FGRSPGCAAQ 151 200 ENSP00000357594/1-315 LPLVPCNQAK ASDV----QD LLKDLKAQSQ VLGWILIAVV IIILLIFTSV ENSBTAP00000037863/1-316 LPLVPCQQAQ APDVKQLQKE LQKELTAHSQ VLGWVLIAVV IILLLICTSI ENSTTRP00000015687/1-176 LPLVPCHQVQ APDV----QD LQKELKAQSQ ---------- ---------- bmy_06851T0/1-316 LPLVPCHQVQ APDV----QD LQKELKAQSQ VLGWALIAVV IIVLLIFTSI BACU014238/1-316 LPLVPCHQVQ APEV----QD LQKELKAQSQ VLGWALIAVV IIVLLIFTSI 201 250 ENSP00000357594/1-315 TRCLSPVSFL QLKFWKIYLE QEQQILKSKA TEHATELAKE NIKCFFEGSH ENSBTAP00000037863/1-316 TRCLSPVSYL QLKFWKIYLQ QEQQILKSQA TEHAMQLAKE NIKCFFECSH ENSTTRP00000015687/1-176 ---------- ---------- ---------- ---------- ---------- bmy_06851T0/1-316 TRCLSPVSFL QLKFWKIYLE QEQRILKSQA TEHATELAKE NIKCFFECSH BACU014238/1-316 TRCLSPVSFL QLKFWKIYLE QEQQILKSQA TEHATELAKE NIKCFFECSH 251 300 ENSP00000357594/1-315 PKEYNTPSMK EWQQISSLYT FNPKGQYYSM LHKYVNRKEK THSIRSTEGD ENSBTAP00000037863/1-316 PQEYNTPSIK DWQQISSLYT FNPKEQYYST LHKYVNKKQK NQSSTSSEED ENSTTRP00000015687/1-176 ---------- ---------- ---------- ---------- ---------- bmy_06851T0/1-316 PKEYKTPSIK DWQQISSLYT FNPKEQYYSI LHKYVNRKEK NQSIRSSKED BACU014238/1-316 PKEYNTPSVK DWQQISSLYT FNPKEQYYSI LHKYVNRKEK NRSIRSSKED 301 350 ENSP00000357594/1-315 TVIPVLGFVD SSGINSTPEL ENSBTAP00000037863/1-316 AMVPVLGFVD SSDMNSTTDL ENSTTRP00000015687/1-176 ---------- ---------- bmy_06851T0/1-316 AVVPVLGFVD SSDINSIPDL BACU014238/1-316 AVVPVLGFVD SSDITSTPDL