KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:02 2014 Check: 00 .. Name: ENSTTRP00000000231/1-503 Len: 536 Check: 8131 Weight: 1.00 Name: ENSBTAP00000037874/1-534 Len: 536 Check: 5409 Weight: 1.00 Name: ENSP00000357440/1-536 Len: 536 Check: 674 Weight: 1.00 Name: bmy_15732T0/1-455 Len: 536 Check: 301 Weight: 1.00 Name: BACU014268/1-503 Len: 536 Check: 1237 Weight: 1.00 // 1 50 ENSTTRP00000000231/1-503 ---------- ---------- ---------- -NGQSFLVLD EQRFAKEILP ENSBTAP00000037874/1-534 MKQSSNVPAF LSKLWTLVEE THTNEFITWS QNGQSFLVLD EQRFAKEILP ENSP00000357440/1-536 MKQSSNVPAF LSKLWTLVEE THTNEFITWS QNGQSFLVLD EQRFAKEILP bmy_15732T0/1-455 MKQSSNVPA- ---------- ---------- ---------- ---------- BACU014268/1-503 ---------- ---------- ---------- -NGQSFLVLD EQRFAKEILP 51 100 ENSTTRP00000000231/1-503 KYFKHNNMAS FVRQLNMYGF RKVVHIDSGI VKQERDGPVE FQHPYFKQGQ ENSBTAP00000037874/1-534 KYFKHNNMAS FVRQLNMYGF RKVVHIDSGI VKQERDGPVE FQHPYFKQGQ ENSP00000357440/1-536 KYFKHNNMAS FVRQLNMYGF RKVVHIDSGI VKQERDGPVE FQHPYFKQGQ bmy_15732T0/1-455 ---------- FLSKL--WTL VEETHTNEFI TWSQ------ ---------- BACU014268/1-503 KYFKHNNMAS FVRQLNMYGF RKVVHIDSGI VKQERDGPVE FQHPYFKQGQ 101 150 ENSTTRP00000000231/1-503 DDLLENIKRK VSSAKPEENK IRQEDLTKII SSAQKVQIKQ ETIESRLSEL ENSBTAP00000037874/1-534 DDLLENIKRK VSSSKPEENK IRQEDLTKII SSAQKVQIKQ ETIESRLSEL ENSP00000357440/1-536 DDLLENIKRK VSSSKPEENK IRQEDLTKII SSAQKVQIKQ ETIESRLSEL bmy_15732T0/1-455 ---------- VSSAKPEENK IRQEDLTKII SSAQKVQIKQ ETIESRLSEL BACU014268/1-503 DDLLENIKRK VSSAKPEENK IRQEDLTKII SSAQKVQVKQ ETIESRLSEL 151 200 ENSTTRP00000000231/1-503 KSENESLWKE VSELRAKHAQ QQQVIRKXXX XXXXXXXXXX XXXXXXXXPL ENSBTAP00000037874/1-534 KSENESLWKE VSELRAKHAQ QQQVIRKIVQ FIVTLVQNNQ LVSLKRKRPL ENSP00000357440/1-536 KSENESLWKE VSELRAKHAQ QQQVIRKIVQ FIVTLVQNNQ LVSLKRKRPL bmy_15732T0/1-455 KSENESLWKE VSELRAKHAQ QQQVIRKIVQ FIVTLVQNNQ LVSLKRKRPL BACU014268/1-503 KSENESLWKE VSELRAKHAQ QQQVIRKIVQ FIVTLVQNNQ LVSLKRKRPL 201 250 ENSTTRP00000000231/1-503 LLNTNGAQKK NLFQHIVKEP ADNHHHKVPH SRTEGLKPRE RISDDIIIYD ENSBTAP00000037874/1-534 LLNTNGAQKK NLFQHIVKEP ADNHHHKVPH SRTEGLKSRE RISDDIIIYD ENSP00000357440/1-536 LLNTNGAQKK NLFQHIVKEP TDNHHHKVPH SRTEGLKPRE RISDDIIIYD bmy_15732T0/1-455 LLNTNGAQKK NLFQHIVKEP ADNHHHKVPH SRTEGLKPRE RISDDIIIYD BACU014268/1-503 LLNTNGAQKK NLFQHIVKEP ADNHHHKVPH SRTEGLKPRE RISDDIIIYD 251 300 ENSTTRP00000000231/1-503 VTDDNADEEN IPVIPETNED VISDPSNCSQ YPDIVIVEDD NEDEYAPVIQ ENSBTAP00000037874/1-534 VTDDNADEEN IPVIPETNED VISDPSNCSQ YPDIVIVEDD NEDEYAPVIQ ENSP00000357440/1-536 VTDDNADEEN IPVIPETNED VISDPSNCSQ YPDIVIVEDD NEDEYAPVIQ bmy_15732T0/1-455 VTDDNADEEN IPVIPETNED VISDPSNCSQ YPDIVIVEDD NEDEYAPVIQ BACU014268/1-503 VTDDNADEEN IPVIPETNED VISDPSNCSQ YPDIVIVEDD NEDEYAPVIQ 301 350 ENSTTRP00000000231/1-503 SGDQSEPARE SLSSGSDGTS PLMSSAVQLN GSSSLTTEDP VTMMDSILND ENSBTAP00000037874/1-534 SGDQSEPARE SLSSGSDGSS PLMSSAVQLN GSSSLTTEDP VTMMDSILND ENSP00000357440/1-536 SGEQNEPARE SLSSGSDGSS PLMSSAVQLN GSSSLTSEDP VTMMDSILND bmy_15732T0/1-455 SGDQSEPAXE SLSSGSDGTS PLMSSAVQLN GSSSLTTEDP VTMMDSILND BACU014268/1-503 SGDQSGPARE SLSSGSDGTS PLMSSAVQLN GSSSLTTEDP VTMMDSILND 351 400 ENSTTRP00000000231/1-503 NINLLGKVEL LDYLDSIDCS LEDFQAMLSG RQFIIDPDLL VELFTSSVQM ENSBTAP00000037874/1-534 NINLLGKVEL LDYLDSIDCS LEDFQAMLSG RQFSIDPDLL VDVDSLSMLL ENSP00000357440/1-536 NINLLGKVEL LDYLDSIDCS LEDFQAMLSG RQFSIDPDLL VDLFTSSVQM bmy_15732T0/1-455 NINLLGKVEL LDYLDSIDCS LEDFQAMLSG RQFSIDPDLL VDLFTSSVQM BACU014268/1-503 NINLLGKVEL LDYLDSIDCS LEDFQAMLSG RQFSIDPDLL VDLFTSSVQM 401 450 ENSTTRP00000000231/1-503 NPTDYINNTK SENKGLE-TK SNVVQPVSEE GRKSKPKTDK QLIQYTAFPL ENSBTAP00000037874/1-534 SILDYLDRCK SENKGLE-TK NNVVQPVSEE GRKSKPKTDK QLIQYTAFPL ENSP00000357440/1-536 NPTDYINNTK SENKGLETTK NNVVQPVSEE GRKSKSKPDK QLIQYTAFPL bmy_15732T0/1-455 NPTDYINNTK SENKGLE-TK SNVVQPVSEE GRKSKPKTDK QLIQYTAFPL BACU014268/1-503 NPTDYINNTK SENKGLE-TK SNVVQPVSEE GRKSKPKTDK QLIQYTAFPL 451 500 ENSTTRP00000000231/1-503 LAFLDGNPAS TVEQGS-TAS SEVMSSVDKP IEVDELLDSS LDPEPTQSKL ENSBTAP00000037874/1-534 LAFLDGNPAS SVEQGS-TTS SEVMSSVDKP IEVDELLDSS LDPEPTQSKL ENSP00000357440/1-536 LAFLDGNPAS SVEQASTTAS SEVLSSVDKP IEVDELLDSS LDPEPTQSKL bmy_15732T0/1-455 LAFLDGNPAS TVEQGS-TAS SEVMSSVDKP IEVDELLDSS LDPEPTQSKL BACU014268/1-503 LAFLDGSPAS TVEQGS-TAS SEVMSSVDKP IEVDELLDSS LDPEPTQSKL 501 550 ENSTTRP00000000231/1-503 VRLEPLTEAE ASEATLFYLC ELAPAPLDSD MPLLDS ENSBTAP00000037874/1-534 VRLEPLTEAE ASEATLFYLC ELAPAPLDSD MPLLDS ENSP00000357440/1-536 VRLEPLTEAE ASEATLFYLC ELAPAPLDSD MPLLDS bmy_15732T0/1-455 VRLEPLTEAE ASEATLFYLC ELAPAPLDSD MPLLDS BACU014268/1-503 VRLEPLTEAE ASEATLFYLC ELAPAPLDSD MPLLDS