KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:03 2014 Check: 00 .. Name: ENSP00000386439/1-482 Len: 541 Check: 8297 Weight: 1.00 Name: ENSBTAP00000037876/1-479 Len: 541 Check: 3782 Weight: 1.00 Name: ENSTTRP00000014197/1-204 Len: 541 Check: 2255 Weight: 1.00 Name: bmy_11821T0/1-510 Len: 541 Check: 2195 Weight: 1.00 Name: BACU009628/1-341 Len: 541 Check: 4181 Weight: 1.00 // 1 50 ENSP00000386439/1-482 MASPEPRRGG DGAAQAARKT RVEANSPLP- KNSGSLNEAE ALNPEVTLSS ENSBTAP00000037876/1-479 MASPEPRRGG NGSAQAARAT RPEVISPLQE ENSASLYELG TWNPEVTLSL ENSTTRP00000014197/1-204 ---------- ---------- ---------- ---------- ---------- bmy_11821T0/1-510 ---------- ----MRLKRN TRAEATSLQE ENSESPYEVG TWNPEVTLSL BACU009628/1-341 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000386439/1-482 EGSLNLEDIL YLEDTGDLDE TLYVQETEKA EEALYIEEAM QPDEALHVEE ENSBTAP00000037876/1-479 EGTLNLEDIL YLGDTGDLDE ALYVEETEPP EETLHIEETR MPDEALYLEE ENSTTRP00000014197/1-204 ---------- ---------- ---------- ---------- ---------- bmy_11821T0/1-510 EGTLNLEDIL YLGDTGDFDV AMYVEETKKP EEMLHIEETR TPDEALYVEE BACU009628/1-341 ---------- ---------- -MYVEETKKP EEMLHIEETR TPDEALYVEE 101 150 ENSP00000386439/1-482 PGNPEETVCV EETTEPDRIQ FVEGPVEPGK PTSPEHVVYE GETVTRAEKS ENSBTAP00000037876/1-479 PVRPEAALYV E---EPVKLE GVLYVEEPVK TASPEQIVHG GDRVLSEAKS ENSTTRP00000014197/1-204 ---------- ---------- ---------- ---------- ---------- bmy_11821T0/1-510 PGKPEEMLYV E---EPVK-- -------PGK TTGPEQMXYG GETVPSEEKP BACU009628/1-341 PGKPGEMLYV E---EPVK-- -------PGK TTSPEQMVYG GETVPSEEKP 151 200 ENSP00000386439/1-482 NPEESLRAEQ SPSMEENLSI EDLELLEGRF QQCVQAVAQL EEERDQLIHE ENSBTAP00000037876/1-479 KPKESLQAGP SPSTEGSLSI EDLELLEGRF QQCIEAVAQL EEERDQLIHE ENSTTRP00000014197/1-204 ---------- ---------- ---------- ---------- ---------- bmy_11821T0/1-510 NPEESLRAGP GPSTEGSLST EDLELLEGRF QQCVQAVAQL EEERDQLIHE BACU009628/1-341 NPEESLRAGP GPSTEGSLST EDLELLEERF QQCVQAVAQL EEERDQLIHE 201 250 ENSP00000386439/1-482 LVLLREPALQ EVQQVHQDIL AAYKLHAQAE LERDGLREEI RLVKQKLFKV ENSBTAP00000037876/1-479 LVLLREPALQ EVQQVHRDIL AAYKQHAQAE LERDGLREEI RLVKQKLFKV ENSTTRP00000014197/1-204 ---------- ---------- ---------- ---------- ---------- bmy_11821T0/1-510 LVLLREPALQ EVQRVHQDIL AAYKLHAQAE LERDGLREEI RLVKQKLFKV BACU009628/1-341 LVLLREPALQ EVQRVHQDIL AAYKLHAQAE LERDGLREEI RLVKQKLFKV 251 300 ENSP00000386439/1-482 TKECVAYQYQ LECRQQDVAQ FADFREVLTT RATQLSEELA QLRDAYQKQK ENSBTAP00000037876/1-479 TKECVAYQYQ LECRRQDVAQ FADFREALTT RAAQLSEELT QLREAYQKQK ENSTTRP00000014197/1-204 ---------- ---------- -----EVLTA QAAQLSEELA QLRDAYQKQK bmy_11821T0/1-510 TKECVSYQYQ LECRRQDVAQ FXEFREVLTA RAAQLSEELA QLLDAYQKQK BACU009628/1-341 TKECVSYQYQ LECRRQDVAQ FAEFREVLTA RAAQLSEELA QLLDAYQKQK 301 350 ENSP00000386439/1-482 EQLRQQLEAP PSQRDGHFLQ ESRRLSAQFE NLMAESRQDL EEEYEPQFLR ENSBTAP00000037876/1-479 EQLRQQLEAP QSQRDGHFLQ ESRRLSAQFE SLMAESRQGL EEEYEPQLLR ENSTTRP00000014197/1-204 EQLRQQLEAP PSQRDGHFLQ ESRQLSAQFE NLMAESRQGL EQEYEPQLLR bmy_11821T0/1-510 EQLRQQLEAP PSQRDGHFLQ ESRQLSAQFE SLMAESRQGL EQEYEPQLLR BACU009628/1-341 EQLRQQLEAP PSQRDGHFLQ ESRQLSAQFE NLMAESRQGL EQEYEPQLLR 351 400 ENSP00000386439/1-482 LLERKEAGTK ALQRTQAEIQ EMKEALRPLQ AEARQLRLQN RNLEDQIALV ENSBTAP00000037876/1-479 LLERKEAAAK ALQKTQAEIQ EMKEALRPLQ AEAQKLHLQN RNLEDQITLV ENSTTRP00000014197/1-204 LLEKKEAAAR ALQKTQAEIQ EMKEALRPLQ AEALQLQLQN RNLEDQTTLV bmy_11821T0/1-510 LLERKEAAAE ALQKTQAEIQ EMKEALRPLQ AEALQLHLQN RNLEDQTTLV BACU009628/1-341 LLERKEAAAE ALQKTQAEIQ AMKEALRPLQ AEALQLHLQN RNLEDQTTLV 401 450 ENSP00000386439/1-482 RQKRDEEVQQ ---------- ---------- ---------- -------YR- ENSBTAP00000037876/1-479 RQKRDEEVQQ ---------- ---------- ---------- -------YR- ENSTTRP00000014197/1-204 RQKRDEDVQQ ---------- ---------- ---------- -------YR- bmy_11821T0/1-510 RQKRDEEVQQ QDSFQNSTTV KNSITVKTQI LFLNLNTAME IKQCVRKYTI BACU009628/1-341 RQKRDEEVQQ ---------- ---------- ---------- -------YR- 451 500 ENSP00000386439/1-482 ---------- ---------- EQLEEMEERQ RQLRNGVQLQ QQKNKEMEQL ENSBTAP00000037876/1-479 ---------- ---------- EQLEEMEERQ RQLRSGVQLQ QQKNKEMEQL ENSTTRP00000014197/1-204 ---------- ---------- EQLEEMEEQQ RQLRSGVQLQ QQKNKEMEQL bmy_11821T0/1-510 MDNVRFLLFG ALEMFLALMQ EQLEEMEERQ RQLRSGVQLQ QQRNKEMEQL BACU009628/1-341 ---------- ---------- -------VGP RGMKGSTVF- ---------- 501 550 ENSP00000386439/1-482 RLSLAEELST YKAMLLPKSL EQADAPTSQA GGMETQSQGA V ENSBTAP00000037876/1-479 RVSLAEELAT YKAM-LPKSL EQANAPTSEA GGIETPSQGA V ENSTTRP00000014197/1-204 KISLAEELAT YKPM-LPKSL EQANAPTSEA SGIQTQPQ-- - bmy_11821T0/1-510 RISLAEELST YKGC-LETYG RICNQETTTK NSLAKDH--- - BACU009628/1-341 ---------- ---------- ---------- ---------- -