KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:03 2014 Check: 00 .. Name: BACU018907/1-178 Len: 331 Check: 2609 Weight: 1.00 Name: ENSP00000362743/1-295 Len: 331 Check: 4824 Weight: 1.00 Name: ENSBTAP00000037919/1-285 Len: 331 Check: 9906 Weight: 1.00 Name: bmy_04900T0/1-168 Len: 331 Check: 2382 Weight: 1.00 Name: ENSTTRP00000015249/1-168 Len: 331 Check: 4535 Weight: 1.00 // 1 50 BACU018907/1-178 ---------- ---------- ---------- ---------- ---------- ENSP00000362743/1-295 MERELEALAA RLARPAEPPF QALVEAAGGR GQVLLVGELW EREQSRALLR ENSBTAP00000037919/1-285 MERELEALAA RPESPGEPPF QALVEAAGGR GQVLLVGELW EREQSRALLW bmy_04900T0/1-168 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015249/1-168 ---------- ---------- ---------- ---------- ---------- 51 100 BACU018907/1-178 ---------- ---------- ---------- ---------- ---------- ENSP00000362743/1-295 DFARAVFPPE PGAAKPGGAA AEGAGPGAAR GAQRAARAAG AAGAAAAAAR ENSBTAP00000037919/1-285 DFARAMFPPQ QAAGKPGGGA AEGAGPGAPR APKR------ ----HATGAR bmy_04900T0/1-168 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015249/1-168 ---------- ---------- ---------- ---------- ---------- 101 150 BACU018907/1-178 ---------- ---------- ---MIYYLIL FFRQHKIEDA ---GILYVTE ENSP00000362743/1-295 AIRSPLVFVL CRASSLAARE PRRRLREMLR DVRGRRRAGA ALVGVLVAEA ENSBTAP00000037919/1-285 AIRSPLVFVL CRASSLAARG PRRHLREMLR DVRGRRRAGA ALVGVLVAEA bmy_04900T0/1-168 ---------- ---------- -------MLR DVRSRRRPGA ALVGVLVAEA ENSTTRP00000015249/1-168 ---------- ---------- -------MLR DVRSRRRPGA ALVGVLVAEA 151 200 BACU018907/1-178 KKE------- --------AK HEKKPGKSIQ HSKPCVGRGH VYYAKFINTN ENSP00000362743/1-295 GPEDAVAPGL RLLEALLRAV FGRQAGGPVQ AAAYCPGLPA SCLA-VQAAA ENSBTAP00000037919/1-285 EPEDAVAPEL RLLEALLRTV FGRQAGGPVQ AAAYRPGQPG SSLA-VQAAA bmy_04900T0/1-168 EPEDAVAPEL RLLEALLRTV FGRQAGGPVQ AAAYCPGHPA SSLT-VQAAA ENSTTRP00000015249/1-168 EPEDAVAPGL RLLETLLRTV FGRQAGGPVQ AAAYCPGHPA SNLT-VQAAA 201 250 BACU018907/1-178 VRTCNEPVPY IDPKNEPEEQ G--------D W--WSHGKGL ENPFQPPYDT ENSP00000362743/1-295 CRALQAAGAG QPVEGAWERP GLPGLLACFS WGPWSRRKNQ DVA-----AC ENSBTAP00000037919/1-285 CRALQAAGPW QPAEGAWERP GLPALLACFS WGPWSRGKNP DTS-----SR bmy_04900T0/1-168 CRALQAAGPL RPAEGAWERP GRPGLLACFS RGPWSRGKDP DAT-----SP ENSTTRP00000015249/1-168 CRALQAAGRL RPAEGAWERP GLQGLLACFS WGPWSRGKDP DAT-----SP 251 300 BACU018907/1-178 KSTQRSDFKK PTCPFVSPVK YSK--LLKPS YGIVPLASPD ASAELQKNFI ENSP00000362743/1-295 RSSAQEDFQE PEEELPLTAI FPNGDCDDLG RGSKA----- ---------C ENSBTAP00000037919/1-285 SGPAQGDLRD SEEELVLTAV YPNGDCEDPG EGSEP----- ---------C bmy_04900T0/1-168 SDPAQDKFQD PEEHLALTVV YPNGDCEDPG KGSVA----- ---------C ENSTTRP00000015249/1-168 SDPAQGNFQD PEEELALTVV YPNGDCEDPR KGSVA----- ---------C 301 350 BACU018907/1-178 ERISFSHQYD ARKTPNEPIW GKVSQYLESI T ENSP00000362743/1-295 DGVV------ --HTPAEPT- GDSR------ - ENSBTAP00000037919/1-285 DRIA------ --SAPTEPA- GDLR------ - bmy_04900T0/1-168 DRVA------ --STPAEPA- GDLR------ - ENSTTRP00000015249/1-168 DRVA------ --STPTEPA- GDLR------ -