KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:04 2014 Check: 00 .. Name: ENSTTRP00000005758/1-1351 Len: 1354 Check: 6442 Weight: 1.00 Name: ENSP00000305721/1-1353 Len: 1354 Check: 9424 Weight: 1.00 Name: ENSBTAP00000037932/1-1353 Len: 1354 Check: 2744 Weight: 1.00 Name: bmy_08742T0/1-1099 Len: 1354 Check: 7110 Weight: 1.00 Name: BACU002019/1-1317 Len: 1354 Check: 586 Weight: 1.00 // 1 50 ENSTTRP00000005758/1-1351 -MSSIPDCTS XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000305721/1-1353 MSSPMPDCTS KCRSLKHALD VLSVVTKGSE NQIKAFLSSH CYNAATIKDV ENSBTAP00000037932/1-1353 MNSSIPDCTS KCRSLTHALD VLSVVTKGSE NQIKAFLSSH CHNAATIRDA bmy_08742T0/1-1099 MNSSIPDCTS KCRSLKHALD VLSVVTKGSE NQIKAFLSSH CYNAATIKDA BACU002019/1-1317 MNSSIPDCTS KCRSLKHALD VLSVVTKGSE NQIKAFLSSH CYNAATIKDA 51 100 ENSTTRP00000005758/1-1351 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXWTAL HRSVFYGHID ENSP00000305721/1-1353 FGRNALHLVS SCGKKGVLDW LIQKGVDLLV KDKESGWTAL HRSIFYGHID ENSBTAP00000037932/1-1353 FGRNALHLVA SCGKKGVLDW LIEKGVDPSV KDKESGWTAL HRSIFYGHID bmy_08742T0/1-1099 FGRNALHLVS SCGKKGVLDW LIEKGVDPLV KDKESGWTAL HRSVFYGHID BACU002019/1-1317 FGRNALHLVS SCGKKGVLDW LIEKGVDPLV KDKESGWTAL HRSVFYGHID 101 150 ENSTTRP00000005758/1-1351 CVWSLLKRGV SLYIQDKEGL SALDLVMKDR PAHVVFRNTD PTDVYTWGDN ENSP00000305721/1-1353 CVWSLLKHGV SLYIQDKEGL SALDLVMKDR PTHVVFKNTD PTDVYTWGDN ENSBTAP00000037932/1-1353 CVWSLLKHGV NLYIQDKEGL SALDLVMKDR PTHVVFKNTD PTDVYTWGDN bmy_08742T0/1-1099 CVWSLLKRGV SLYIQDKEGL SALDLVMKDR PAHVVFRNTD PTDVYTWGDN BACU002019/1-1317 CVWSLLKHGV SLYIQDKEGL SALDLLMKDR PAHVVFRNTD PTDVYTWGDN 151 200 ENSTTRP00000005758/1-1351 TNFTLGHGSQ NSKHHPELVD LFSRSGVYIK QVVLCKFHSV FLSQKGQVYT ENSP00000305721/1-1353 TNFTLGHGSQ NSKHHPELVD LFSRSGIYIK QVVLCKFHSV FLSQKGQVYT ENSBTAP00000037932/1-1353 TNFTLGHGSQ NSKHHPELVD LFSRSGIYIK QVVLCKFHSV FLSQKGQVYT bmy_08742T0/1-1099 TNFTLGHGSQ NSKHHPELVD LFSRSGVYIK QVVLCKFHSV FLSQKGQVYT BACU002019/1-1317 TNFTLGHGSQ NSKHHPELVD LFSRSGVYIK QVVLCKFHSV FLSQKGQVYT 201 250 ENSTTRP00000005758/1-1351 CGHGPGGRLG HGDEQTCLVP RLVEGLSGHN CSQVAAAKDH TVVLTEDGCV ENSP00000305721/1-1353 CGHGPGGRLG HGDEQTCLVP RLVEGLNGHN CSQVAAAKDH TVVLTEDGCV ENSBTAP00000037932/1-1353 CGHGPGGRLG HGDEQTCLVP RLVEGLSGHN CSQVAAAKDH TVVLTEDGCV bmy_08742T0/1-1099 CGHGPGGRLG HGDEQTCLVP RLVEGLSGHN CSQVAAAKDH TVVLTEDGCV BACU002019/1-1317 CGHGPGGRLG HGDEQTCLVP RLVEGLSGHN CSQVAAAKDH TVVLTEDGCV 251 300 ENSTTRP00000005758/1-1351 YTFGLNIFHQ LGIIPPPSSC NVPRQMQAKY LKGRTVTGVA AGRFHTVLWT ENSP00000305721/1-1353 YTFGLNIFHQ LGIIPPPSSC NVPRQIQAKY LKGRTIIGVA AGRFHTVLWT ENSBTAP00000037932/1-1353 YTFGLNIFHQ LGLIPPPSSC NVPRQMQAKY LKGRTIIGVA AGRFHTVLWT bmy_08742T0/1-1099 YTFGLNIFHQ LGIIPPPSSC NVPRQMQAKY LKGRTVTGVA AGRFHTVLWT BACU002019/1-1317 YTFGLNIFHQ LGIIPPPSSC NVPRQMQAKY LKGRTVTGVA AGRFHTVLWT 301 350 ENSTTRP00000005758/1-1351 REAVYTMGLN GGQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000305721/1-1353 REAVYTMGLN GGQLGCLLDP NGEKCVTAPR QVSALHHKDI ALSLVAASDG ENSBTAP00000037932/1-1353 REAVYTMGLN GGQLGYLLDP NGEKCVTAPR QVSALHHKDI TLSLVAASDG bmy_08742T0/1-1099 REAVYTMGLN GGQLGYLLDP NGEKCVTAPR QVSALHHKDI TVSLVAASDG BACU002019/1-1317 REAVYTMGLN GGQLGYLLDP NGEKCVTAPR QVSALHHKDV TVSLVAASDG 351 400 ENSTTRP00000005758/1-1351 XXXXXXXXXX XXXXXXXXXX XXXXXQLNVK KVLVSGGHME YKVDPEHLKE ENSP00000305721/1-1353 ATVCVTTRGD IYLLADYQCK KMASKQLNLK KVLVSGGHME YKVDPEHLKE ENSBTAP00000037932/1-1353 ATVCVTTKGD IYLLADYQCK KLASKQLNLK KVLVSGGHME YKVDPEHLKE bmy_08742T0/1-1099 ATVCXTTKGD IYLLADYQCK KMASKQLNVK KVLVSGGHME YKVDPEHLKE BACU002019/1-1317 ATVCVTTKGD IYLLADYQCK KMASKQLNVK KVLVSGGHME YKVDPEHLKE 401 450 ENSTTRP00000005758/1-1351 NGGEKICILA MDGAGRVFCW RSVNSSLKQC RWAYPRQVFI SDIALSRNEI ENSP00000305721/1-1353 NGGQKICILA MDGAGRVFCW RSVNSSLKQC RWAYPRQVFI SDIALNRNEI ENSBTAP00000037932/1-1353 NGGQKICILA MDGAGRVFCW RSVNSSMKQC RWAYPRQVFI SDIALSRNEI bmy_08742T0/1-1099 NGGEKICILA MDGAGRVFCW RSVNSSLKQC RWAYPRQVFI SDIALSRNEI BACU002019/1-1317 NGGEKICILA MDGAGRVFCW RSVNSSLKQC RWAYPRQVFI SDIALSRNEI 451 500 ENSTTRP00000005758/1-1351 LFVTRDGEGF RGKWFEEKRK SSEKK-EILS NLHNSSPDVS CVSDINSAYE ENSP00000305721/1-1353 LFVTQDGEGF RGRWFEEKRK SSEKK-EILS NLHNSSSDVS YVSDINSVYE ENSBTAP00000037932/1-1353 LFVTQDGEGF RGKWFEEKRK SSEKKAEILS NLHNSSPDVS CVSDINSVYE bmy_08742T0/1-1099 LFVTRDGEGF RGKWFEEKRK SSEKKADILS NLHNSSPDXS CVSDMNSAYE BACU002019/1-1317 LFVTRDGEGF RGKWFEEKRK SSEKKAEILS NLHNSSPDVS CVSDINSAYE 501 550 ENSTTRP00000005758/1-1351 RIRLEKLTFA HRAVSVSTDP SGCNFAILQS DPKTSLYEIP SVSSSSFFEE ENSP00000305721/1-1353 RIRLEKLTFA HRAVSVSTDP SGCNFAILQS DPKTSLYEIP AVSSSSFFEE ENSBTAP00000037932/1-1353 RIRLEKLTFA HRAVSVSTDP SGCNFAVLQS DPKTSLYEIP TVSSSSFFEE bmy_08742T0/1-1099 RIRLEKLTFA HRAVSVSTDP SGCNFAILQS DPKTSLYEIP AVSSSSFFEE BACU002019/1-1317 RIRLEKLTFA HRAVSVSTDP SGCNFAILQS DPKTSLYEIP AVSSSSFFEE 551 600 ENSTTRP00000005758/1-1351 FGKLLRETDE MDNIHDVTFQ VGNRIFPAHK YILAVRSDFF QKLFLSDGTT ENSP00000305721/1-1353 FGKLLREADE MDSIHDVTFQ VGNRLFPAHK YILAVHSDFF QKLFLSDGNT ENSBTAP00000037932/1-1353 FGKLLRETDE MDNIHDVTFQ IGSRLFPAHK YILAVRSDFF QKLFLSDGTA bmy_08742T0/1-1099 FGKLLRETDE MDNIHDVTFQ VGNRIFPAHK YILAVRSDIF QKLFLSDGTT BACU002019/1-1317 FGKLLRETDE MDSIHDVTFQ VGSRLFPAHK YILAVRSDFF QKLFLSDGTT 601 650 ENSTTRP00000005758/1-1351 LDFIDVYRKD EDSAGCHLFV VEKVHPDLFE YLLQFIYTDT CDFLTHGFKP ENSP00000305721/1-1353 SEFTDIYQKD EDSAGCHLFV VEKVHPDMFE YLLQFIYTDT CDFLTHGFKP ENSBTAP00000037932/1-1353 LDFTDVYRKD EDSTGCHLFV VEKVHPDLFE YLLQFIYTDT CDFLTHGFKP bmy_08742T0/1-1099 LDFIDVYRKD EDSAGCHLFV VEKVHPDLFE YLLQFIYTDT CDFLTHGFKP BACU002019/1-1317 LDFMDVYRKD EDSAGCHLFV AEKVHPDLFE CLLQFIYTDT CDFLTHGFKP 651 700 ENSTTRP00000005758/1-1351 RINSNKKPEE YQSTPNCHLN KMNSHE-DNQ KSAFEVYKSN QAHTISEKQK ENSP00000305721/1-1353 RIHLNKNPEE YQGTLNSHLN KVNFHEDDNQ KSAFEVYKSN QAQTVSERQK ENSBTAP00000037932/1-1353 RLNLNRKPEG YPSTPNCHSN KMNSHE-DNQ KSAFEAYKSN QAHTISEKQK bmy_08742T0/1-1099 RINLNKKPEE YQSTPNCHLN KMNSHE-DNQ KSAFEVYKSN QAHTISEKQK BACU002019/1-1317 RINLNKKPEE CQSTPNCHLN KMNSHE-ENQ KSAFEVYKSN QAHTISEKQK 701 750 ENSTTRP00000005758/1-1351 SKNKSFKKVK SVGEDDPVKM LQNVAKKLGF NSLSSRLDGV RFENEEINVI ENSP00000305721/1-1353 SKPKSCKKGK NIREDDPVRM LQTVAKKFDF SNLSSRLDGV RFENEKINVI ENSBTAP00000037932/1-1353 SKSKSSKKVK SVGEDDPVKM LQNVAKKFGF SNLSSRLDGV RYENEEISII bmy_08742T0/1-1099 SKNKSSKKVK SVGEDDPVKM LQNVAKKFGF SNLSSRLDGV RFENEEINVI BACU002019/1-1317 SKNKSSKKVK SVGEDDPVKM LQNVAKKFGF SNLSSRLDGV RFENEEINVI 751 800 ENSTTRP00000005758/1-1351 GKKTGNKPKL SQRKCSYLCD VTMKSVDGKE FPCHKCVLCA RLEYFHSMLS ENSP00000305721/1-1353 AKNTGNKLKL SQKKCSFLCD VTMKSVDGKE FPCHKCVLCA RLEYFHSMLS ENSBTAP00000037932/1-1353 AKKTGSKPKL NQKKCSFLCD VTMKSVDGKE FPCHKCVLCA RLEYFHSMLS bmy_08742T0/1-1099 AKKTGSKPKL SQRKCSYLCD VTMKSVDGKE FPCHKCVLCA RLEYFHSMLS BACU002019/1-1317 AKKTGNKPKL SQRKCSYLCD VTMKSVDGKE FPCHKCVLCA RLEYFHSMLS 801 850 ENSTTRP00000005758/1-1351 SSWIEASSCA ALEMPIHSDI LKVILDYLYT DEAVVIKESQ NLDFVCSVLV ENSP00000305721/1-1353 SSWIEASSCA ALEMPIHSDI LKVILDYLYT DEAVVIKESQ NVDFICSVLV ENSBTAP00000037932/1-1353 SSWIEASSCA ALEMPIHSDI LKVILDYLYT DEAVVIKESQ NVDFVCSVLV bmy_08742T0/1-1099 SSWIEASSCA ALEMPIHSDI LKVILDYLYT DEAVVI---- ---------- BACU002019/1-1317 SSWIEASSCA ALEMPIHSDI LKVILDYLYT DEAVVIKESQ NVDFVCSVLV 851 900 ENSTTRP00000005758/1-1351 VADQLLISRL KEICEVALSE KLTLKNAAML LEFAAMYNAE QLKLSCLQFI ENSP00000305721/1-1353 VADQLLITRL KEICEVALTE KLTLKNAAML LEFAAMYSAK QLKLSCLQFI ENSBTAP00000037932/1-1353 VADQLLISRL KEICEVALTE KLTLKNAAML LEFAAMYNAE QLKLSCLQFI bmy_08742T0/1-1099 ---------- ---------- KVXLKNAAML LEFAAMYNAE QLKLSCLQFI BACU002019/1-1317 VADQLLISRL KEICEVALSE KLTLKNAAML LEFAAMYNAE QLKLSCLQFI 901 950 ENSTTRP00000005758/1-1351 GLNMAALLEA RSLDVLSDGV LKDLSVFYRK MIPAMDRRVI TPYQDGPDIS ENSP00000305721/1-1353 GLNMAALLEA RSLDVLSDGV LKDLSEFYRK MIPAMDRRVI TPYQDGPDIS ENSBTAP00000037932/1-1353 GLNMAALLEA RSLDVLSDGV LKDLSVFYRK MIPAMERRVI TPYQDGPDIS bmy_08742T0/1-1099 GLNMAALLEA RSLDVLSDGV LKDLSVFYRK MIPAMDRRVI TPYQDGPDIS BACU002019/1-1317 GLNMAALLEA RSLDVLSDGV LKDLSVFYRK MIPAMDRRVI TPYQDGPDIS 951 1000 ENSTTRP00000005758/1-1351 YLDVEDGDIF LKEEINMEQN YLESVFKKTK TKAKKKPRKR SDSSGGYNLS ENSP00000305721/1-1353 YLEVEDGDIF LKEEINMEQN HSETMFKKAK TKAKKKPRKR SDSSGGYNLS ENSBTAP00000037932/1-1353 YLDVEDGDIF LKEEVNMEQN YSESMVKKTK TKAKKKPRKR SDSSGGYNLS bmy_08742T0/1-1099 YLDVEDGDIF LKEEINMEQN YSESVFKKTK TKAKKKPRKR SDSSGGYNLS BACU002019/1-1317 YLDVEDGDIF LKEEINMEQN YSESVFKKTK TKAKKKPRKR SDSSGGYNLS 1001 1050 ENSTTRP00000005758/1-1351 DIIQSPPSTG LLKSGKTNSV ESLPELLTSD SEGSYAGVGS PRDLQSPDFT ENSP00000305721/1-1353 DIIQSPSSTG LLKSGKTNSV ESLPELLTSD SEGSYAGVGS PRDLQSPDFT ENSBTAP00000037932/1-1353 DIIQSPPSTG LLKSGKTNSV ESLPELLTSD SEGSYAGVGS PRDLQSPDFT bmy_08742T0/1-1099 DIIQSPPSTG LLKSGKTNSV ESLPELLTSD SEGSYAGVGS PRDLQSPDFT BACU002019/1-1317 DIIQSPPSTG LLKSGKTNSV ESLPELLTSD SEGSYAGVGS PRDLQSPDFT 1051 1100 ENSTTRP00000005758/1-1351 TGFHSDKIEG KIKSYANGTP PTHFREDLKP WEKSPVLKIS APQPIPSSRI ENSP00000305721/1-1353 TGFHSDKIEA KVKPYVNGTS PVYSREDLKP WEKSPILKIS APQPIPSNRI ENSBTAP00000037932/1-1353 TGFHSDKSEG KIKSYVNGTP PAYFREDLKP WEKSPVLKIT APQPIPSNRI bmy_08742T0/1-1099 TGFHSDKTE- ---------- ---------- ---------- ---PIPSNRI BACU002019/1-1317 TGFHADKTEG KTKSYVNGTP PTHFREDLKP WEKSPVLKIS VPQPIPSNRI 1101 1150 ENSTTRP00000005758/1-1351 DITSSSSWVS GSFSPVSPPV VDLRTIMQIE ESRQRCGATP KTNLGKMISH ENSP00000305721/1-1353 DTTSSASWVA GSFSPVSPPV VDLRTIMEIE ESRQKCGATP KSHLGKTVSH ENSBTAP00000037932/1-1353 DTTSSSNWVS GSFSPVSPPV MDLRTIMQIE ESRQKCGTTP KTNLGKMISH bmy_08742T0/1-1099 DTTSSSSWVS GSFR------ ---------- ---------- -----KMISH BACU002019/1-1317 DTTSSSSWVS GSFSPVSPPV MDLRTIMQIE ESRQKCGATP KTNLGKMISH 1151 1200 ENSTTRP00000005758/1-1351 GVKLSQKQRK MIAMTTKDNN SGMNSMETAL SAPSKTPKPA NAWASSLHSV ENSP00000305721/1-1353 GVKLSQKQRK MIALTTKENN SGMNSMETVL FTPSKAPKPV NAWASSLHSV ENSBTAP00000037932/1-1353 GVKLSQKQRK MIALTTKDNN SGMNNMETAL SAPSKIPKPA NAWASSQHSV bmy_08742T0/1-1099 GVKLSQKQRK MIAMTTKDBN SGMNSMETAL SAPSKTPKPA NAW------- BACU002019/1-1317 GVKLSQKQRK MIAMTTKDNN SGMNSMETAL SAPSKTPKPA NAWAFSLHSV 1201 1250 ENSTTRP00000005758/1-1351 SSKSFRDFLL EEKKSITGQS SGDNVKKVCF KGIESSQAAK VVRCSTHGSP ENSP00000305721/1-1353 SSKSFRDFLL EEKKSVTSHS SGDHVKKVSF KGIENSQAPK IVRCSTHGTP ENSBTAP00000037932/1-1353 SSKSFRDFLV EEKKSVTGQR SGDHVKKVCF KGIENSQSPK VVRCSAHGSP bmy_08742T0/1-1099 ---------- ---------- ---------- ---------- ---------- BACU002019/1-1317 SSKSFRDFLL EEKKSITGQS SGDHVKKVCF KGIESSQAAK VVRCSTHGSP 1251 1300 ENSTTRP00000005758/1-1351 GPEGNHILDV PLLDSPNPWL CSSLPAPSVL APVTFASIVE EELQQEAALI ENSP00000305721/1-1353 GPEGNHISDL PLLDSPNPWL SSSVTAPSMV APVTFASIVE EELQQEAALI ENSBTAP00000037932/1-1353 GREGNHISDV PLPDSPNPWL SSSLTAPSVV APVTFASIVE EELQQEAALI bmy_08742T0/1-1099 ---------- ---------- ---------- ----YALILN ---------- BACU002019/1-1317 GPEGNHISDV PLLDSPNPWL CSSLPAPSVL APVTFASIVE EELQQEAALI 1301 1350 ENSTTRP00000005758/1-1351 RSREKPLALI QIEERAIQDL LVFYEAFGNP DEFVIVERTP QGPLAVPMWN ENSP00000305721/1-1353 RSREKPLALI QIEEHAIQDL LVFYEAFGNP EEFVIVERTP QGPLAVPMWN ENSBTAP00000037932/1-1353 RSREKPLALI QIEERAIQDL LVFYEAFGNP DEFVIVERTP QGPLAVPMWN bmy_08742T0/1-1099 ---------- ---------- ---------- ---------- ---------- BACU002019/1-1317 RSREKPLALI Q--------- ---------- ---------- -----RCMYL 1351 1400 ENSTTRP00000005758/1-1351 KHGC ENSP00000305721/1-1353 KHGC ENSBTAP00000037932/1-1353 KHGC bmy_08742T0/1-1099 ---- BACU002019/1-1317 SH--