KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:06 2014 Check: 00 .. Name: bmy_07888T0/1-1045 Len: 1213 Check: 7549 Weight: 1.00 Name: ENSP00000237172/1-1213 Len: 1213 Check: 7300 Weight: 1.00 Name: ENSBTAP00000037944/1-1213 Len: 1213 Check: 4310 Weight: 1.00 Name: BACU002041/1-110 Len: 1213 Check: 3867 Weight: 1.00 Name: ENSTTRP00000007457/1-1205 Len: 1213 Check: 8861 Weight: 1.00 // 1 50 bmy_07888T0/1-1045 MRL------- ---AKFSSSK ESAVQN---- ---------- ---------- ENSP00000237172/1-1213 MRSRNQGGES ASDGHISCPK PSIIGNAGEK SLSEDAKKKK KSNRKEDDVM ENSBTAP00000037944/1-1213 MRSRNQGGES SSNGHVSCPK TSTISNAADK SLSEDTKKKN KSNRKEEDVM BACU002041/1-110 MRSRNQGGES SSNGHVSCPK SSIISNADDK SLSEDT-KKN KSNRKEEDVM ENSTTRP00000007457/1-1205 MRSRNQGGES SSNGHVSCPK SSIISNADDK SLSEDTKKKN KSNRKEEDVM 51 100 bmy_07888T0/1-1045 ---------- ---------- ---------- LFFMRI--GE L--------- ENSP00000237172/1-1213 ASGTVKRHLK TSGECERKTK KSLELSKEDL IQLLSIMEGE LQAREDVIHM ENSBTAP00000037944/1-1213 ASGTVKRHLK PSGESERKSK KSLELSKEDL IQLLSIMEGE LQAREDVIHM BACU002041/1-110 ASGTVKRHLK PSGESERKNK KSLELSKEDL IQLLSIMEGE LQ-------- ENSTTRP00000007457/1-1205 ASGTVKRHLK PSGESERKNK KSLELSKEDL IQLLSIMEGE LQAREDVIHM 101 150 bmy_07888T0/1-1045 ---------- -----GPIPP ---------- ---------- ---------- ENSP00000237172/1-1213 LKTEKTKPEV LEAHYGSAEP EKVLRVLHRD AILAQEKSIG EDVYEKPISE ENSBTAP00000037944/1-1213 LKTEKTKPEV LEAHYGSAEP EKVLRVLHRD AILAQEKSIG EDVYEKPISE BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 LKTEKTKPEV LEAHYGSAEP EKVLRVLHRD AILAQEKSIG EDVYEKPISE 151 200 bmy_07888T0/1-1045 ---------- ---------- ---------- -QWDSDKSLR SD-------- ENSP00000237172/1-1213 LDRLEEKQKE TYRRMLEQLL LAEKCHRRTV YELENEKHKH TDYMNKSDDF ENSBTAP00000037944/1-1213 LDRLEEKQKE TYRRMLEQLL LAEKCHRRTV YELENEKHKH TDYMNKSDDF BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 LDRLEEKQKE TYRRMLEQLL LAEKCHRRTV YELENEKHKH TDYMHKSDDF 201 250 bmy_07888T0/1-1045 ---------R LKKLLEQEKA YQARKEKENA KRLNKLRDEL VKLKSFALML ENSP00000237172/1-1213 TNLLEQERER LKKLLEQEKA YQARKEKENA KRLNKLRDEL VKLKSFALML ENSBTAP00000037944/1-1213 TNLLEQERER LKKLLEQEKA YQARKEKENA KRLNKLRDEL VKLKSFALML BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 TTLLEQERER LKKLLEQEKA YQARKEKENA KRLNKLRDEL VKLKSFALML 251 300 bmy_07888T0/1-1045 VDERQVHIEQ LGLQSQKVQD LTQKLREEEE KLKAITSKSK EDRQKLLKLE ENSP00000237172/1-1213 VDERQMHIEQ LGLQSQKVQD LTQKLREEEE KLKAITSKSK EDRQKLLKLE ENSBTAP00000037944/1-1213 VDERQMHIEQ LGLQSQKVQD LTQKLREEEE KLKAVTAKSK EDRQKLLKLE BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 VDERQMHIEQ LGLQSQKVQD LTQRLREEEE KLKAITSKSK EDRQKLLKLE 301 350 bmy_07888T0/1-1045 VDFEHKASRF SQEHEEMNAK LANQESHNRQ LRLKLVGLTQ RIEELEETNK ENSP00000237172/1-1213 VDFEHKASRF SQEHEEMNAK LANQESHNRQ LRLKLVGLTQ RIEELEETNK ENSBTAP00000037944/1-1213 VDFEHKASRF SQEHEEMNAK LASQESHNRQ LRLKLVGLTQ RIEELEETNK BACU002041/1-110 -DF------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 VDFEHKASRF SQEHEEMSAK LANQESHNRQ LRLRLVGLTQ RIEELEETNK 351 400 bmy_07888T0/1-1045 NLQKAEVELQ ELRDKIAKGE CGNSSLMAEV EKLRKRVLEM EGKDEEITKT ENSP00000237172/1-1213 NLQKAEEELQ ELRDKIAKGE CGNSSLMAEV ENLRKRVLEM EGKDEEITKT ENSBTAP00000037944/1-1213 NLQKAEEELQ ELRDKIAKGE CGNSSLMAEV ENLRKRVLEM EGKDEEITKT BACU002041/1-110 ---------- ---------- -------FEV DSL------- ---------- ENSTTRP00000007457/1-1205 NLQKAEVELQ ELRDKIAKGE CGNSSLMAEV EKLRKRVLEM EGKDEEITKT 401 450 bmy_07888T0/1-1045 ESQCRELRKK LQEEEHHSRE LKLEVEKLQM RMSELEKLEE AFSKSKSECT ENSP00000237172/1-1213 ESQCRELRKK LQEEEHHSKE LRLEVEKLQK RMSELEKLEE AFSKSKSECT ENSBTAP00000037944/1-1213 ESQCRELRKK LQEEEHHSRE LKLEVEKLQK RMSELEKLEE AFSKSKSECT BACU002041/1-110 ---C-----E LQGQSH---- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 ESQCRGLRKK LQEEEHHSRE LRLEVEKLQV RMSELEKLEE AFSKSKSECT 451 500 bmy_07888T0/1-1045 QLHFNLEKEK NLTKDLLNEL EVVKSRVKEL ECSESRLEKA ELSLKDDLTK ENSP00000237172/1-1213 QLHLNLEKEK NLTKDLLNEL EVVKSRVKEL ECSESRLEKA ELSLKDDLTK ENSBTAP00000037944/1-1213 QLHLNLEKEK NLTKDLLNEL EVVKSRVKEL ECSESRLEKA ELSLKDDLTK BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 QLHLNLEKEK NLTKDLLNEL EVVKSRVKEL ECSESRLEKA ELSLKDDLTK 501 550 bmy_07888T0/1-1045 LKSFTVMLVD ERKNMMEKIK QEERKVDGLN KNFKVEQGKV MDVTEKLIEE ENSP00000237172/1-1213 LKSFTVMLVD ERKNMMEKIK QEERKVDGLN KNFKVEQGKV MDVTEKLIEE ENSBTAP00000037944/1-1213 LKSFTVMLVD ERKNMMEKIK QEEKKVDGLN KNFKVEQGKV MDVTEKLIEE BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 LKSFTVMLVD ERKNMMEKIK EE--KVDGLN KNFKGQA--V MDV--KLIES 551 600 bmy_07888T0/1-1045 SKKLLKLKSE MEEKVYSLTK ERDELIGKLK SEEEKSSELS CSVDLLKKRL ENSP00000237172/1-1213 SKKLLKLKSE MEEKVYNLTR ERDELIGKLK SEEEKSSELS CSVDLLKKRL ENSBTAP00000037944/1-1213 SKKLLKLKSE MEEKVYNLTK ERDELIGKLK SEEEKSSELS CSVDLLKKRL BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 --KLLKLKSE MEEKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 bmy_07888T0/1-1045 DGIEEVEREI TRGRCRKGPE LTCPEDNKIK ELTLEIERLK KRLQQLEVVE ENSP00000237172/1-1213 DGIEEVEREI TRGRSRKGSE LTCPEDNKIK ELTLEIERLK KRLQQLEVVE ENSBTAP00000037944/1-1213 DGIEEVEREI TRGRSRKGPE LTCPEDNKIK ELTLEIERLK NRLQQLEVVE BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XRLQQLEVVE 651 700 bmy_07888T0/1-1045 GDLMKTEDEY DQLEQKFRSE QDKANFLSQQ LEEIKHQIAK NKAIEKGEAV ENSP00000237172/1-1213 GDLMKTEDEY DQLEQKFRTE QDKANFLSQQ LEEIKHQIAK NKAIEKGEVV ENSBTAP00000037944/1-1213 GDLMKTEDEY DQLEQKFRTE QDKANFLSQQ LEEIKHQIAK NKAIEKGEAV BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 GDLMKTEDEY GQLEQKFRSE QDKANFLSQQ LEEIKHQIAK NKAIEKGEAV 701 750 bmy_07888T0/1-1045 SQEAELRHRF RLEEAKSRDL KAEVQALKEK IHELMNKEDQ LSQLQVDYSV ENSP00000237172/1-1213 SQEAELRHRF RLEEAKSRDL KAEVQALKEK IHELMNKEDQ LSQLQVDYSV ENSBTAP00000037944/1-1213 SQEAELRHRF RLEEAKSRDL KAEVQALKEK IHELMNKEDQ LSQLQVDYSV BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 SQEAELRHRF RLEEAKSRDL KAEVQALKEK IHELMNKEDQ LSQLQVDYSV 751 800 bmy_07888T0/1-1045 LQQRFMEEEN KNKNMRQEVL HLTKELELSK RYSRALRPSV NGRRMVDVPV ENSP00000237172/1-1213 LQQRFMEEEN KNKNMGQEVL NLTKELELSK RYSRALRPSV NGRRMVDVPV ENSBTAP00000037944/1-1213 LQQRFMEEEN KNKSMGQEVL HLTKELELSK RYSRALRPSV NGRRMVDVPV BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 LQQRFMEEEN KNKNMGQEVL NLTKELELSK RYSRALRPSV NGRRMVDVPV 801 850 bmy_07888T0/1-1045 TSTGVQTDAV GSEAAEEDTP AVFIRKSFQE ENHIMSNLRQ VGLKKPMERS ENSP00000237172/1-1213 TSTGVQTDAV SGEAAEEETP AVFIRKSFQE ENHIMSNLRQ VGLKKPVERS ENSBTAP00000037944/1-1213 TSTGVQTDAL GSEAAEEDTP AVFIRKSFQE ENHIMSNLRQ VGLKKPLERS BACU002041/1-110 ---------- ---------- --FVK----- ---------- ---------- ENSTTRP00000007457/1-1205 TSTGVQTDAV GSEAAEEDTP AVFIRKSFQE ENHIMSNLRQ VGLKKPVERS 851 900 bmy_07888T0/1-1045 SVLDRYPPAA NELTMRKSWI PWMRKRENGP PVTQEKGPRA GSSPGHPGEL ENSP00000237172/1-1213 SVLDRYPPAA NELTMRKSWI PWMRKRENGP SITQEKGPRT NSSPGHPGEV ENSBTAP00000037944/1-1213 SVLDRYPPAA NELTMRKSWI PWMRKRENGP PVAPEKGPRA SASPGHPGEL BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 SVLDRYPPAA NELTMRKSWI PWMRKRENGP PVTQEKGPRA GSSPGHPGEL 901 950 bmy_07888T0/1-1045 VLSPKQGQPL HIRVTPDHEN STATLEITSP TAEEFFSSTT VIPTLGNQKP ENSP00000237172/1-1213 VLSPKQGQPL HIRVTPDHEN STATLEITSP TSEEFFSSTT VIPTLGNQKP ENSBTAP00000037944/1-1213 VLSPKQGQPL HIRVTPDHEN STATLEITSP TAEEFFSSTT VIPTLGNQKP BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 VLSPKQGQPL HIRVTPDHEN STATLEITSP TAEEFFSSTT VIPTLGNQKP 951 1000 bmy_07888T0/1-1045 RITIIPSPNV MSQKQKSGDA TLSAERAMSP VTITTFSREK TPESGRGPFA ENSP00000237172/1-1213 RITIIPSPNV MPQKQKSGDT TLGPERAMSP VTITTFSREK TPESGRGAFA ENSBTAP00000037944/1-1213 RITIIPSPNV LSQKQKGADA TLGPERAMSP VTITTFSREK TPEGGRGAFA BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 RITIIPSPNV MSQKQKSGDA TLSAERAMSP VTITTFSREK TPESGRGPFA 1001 1050 bmy_07888T0/1-1045 DRPTSPIQIM TVSTSAAPAD IAVPPESQEM PVGRTVLKVT PEKQTVPTPV ENSP00000237172/1-1213 DRPTSPIQIM TVSTSAAPAE IAVSPESQEM PMGRTILKVT PEKQTVPTPV ENSBTAP00000037944/1-1213 DRPTSPIQIM TVSTSAAPTD INVPPESQEM PVGRTVLKVT PEKQPGPTPV BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 DRPTSPIQIM TVSTSAAPAD ITVPSESQEM PVGRTVLKVT PEKQTVPAPV 1051 1100 bmy_07888T0/1-1045 RKYNSNANII TTEDNKIHIH LGSQFKRAPG TSAEGASPVI TVRPVSVTAE ENSP00000237172/1-1213 RKYNSNANII TTEDNKIHIH LGSQFKRSPG TSGEGVSPVI TVRPVNVTAE ENSBTAP00000037944/1-1213 RKYNANANII TTEDNKIHIH LGSQFKRGPG TSAEGASPVI TVRPVNVTAE BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 RKYNSNANII TTEDNKIHIH LGSQFKRAPG TAAEGVSPVI TVRPVSVAAE 1101 1150 bmy_07888T0/1-1045 KEVSTGTVLR SPRNHLSSRP GASKVTSTIT ITPVTTSSAR GTQSVSGQDG ENSP00000237172/1-1213 KEVSTGTVLR SPRNHLSSRP GASKVTSTIT ITPVTTSSAR GTQSVSGQDG ENSBTAP00000037944/1-1213 KEVSTGTVLR SPRNHLSPRP GASKVTSTIT ITPVTTSSAR GTQSVSGQDG BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 KEVSTGTVLR SPRSHVSPRP GASKVTSTIT ITPVTTSSAR GTQSVSGQDG 1151 1200 bmy_07888T0/1-1045 SSQRPTPTRI PMSKGMKAGK PVVAAPGAGN LTKFEPRAET QSMKIELKKS ENSP00000237172/1-1213 SSQRPTPTRI PMSKGMKAGK PVVAAPGAGN LTKFEPRAET QSMKIELKKS ENSBTAP00000037944/1-1213 SAQRPTPTRI PMSKGMKAGK PVVAAPGAGN LTKFEPRAET QSMKIELKKS BACU002041/1-110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007457/1-1205 SSQRPTPTRI PMSKGMKAGK AVVAAPGAGN LTKFEPRAET QSMKIELKKS 1201 1250 bmy_07888T0/1-1045 AAGSATSPGG GKG ENSP00000237172/1-1213 AASSTTSLGG GKG ENSBTAP00000037944/1-1213 AASSATSPGG GKG BACU002041/1-110 ---------- --- ENSTTRP00000007457/1-1205 AAGSATSPGG GKG