KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:10 2014 Check: 00 .. Name: ENSP00000258403/1-496 Len: 498 Check: 3739 Weight: 1.00 Name: ENSBTAP00000037975/1-485 Len: 498 Check: 2692 Weight: 1.00 Name: ENSTTRP00000012432/1-489 Len: 498 Check: 527 Weight: 1.00 Name: bmy_03799T0/1-484 Len: 498 Check: 5790 Weight: 1.00 Name: BACU001385/1-435 Len: 498 Check: 6701 Weight: 1.00 // 1 50 ENSP00000258403/1-496 MDCYRTSLSS SWIYPTVILC LFGFFSMMRP SEPFLIPYLS GPDKNLTSAE ENSBTAP00000037975/1-485 MSCFQTSESQ SWIYPTVILC LFGFFSMMRP SEPFLMVYLS GPDKNLTSAE ENSTTRP00000012432/1-489 MSCFQTSASH SWIYPTVILC LFGFFSTMRP SEPFLMLYLS GPDKNLTSEE bmy_03799T0/1-484 MSCFQTSASH SWIYPTVILC LFGFFSMMRP SEPFLMLYLS GPDKNLTSEE BACU001385/1-435 ---------- ---------- ---------- ---------- ---------Q 51 100 ENSP00000258403/1-496 ITNEIFPVWT YSYLVLLLPV FVLTDYVRYK PVIILQGISF IITWLLLLFG ENSBTAP00000037975/1-485 LTNEIFPVWT YSYLALLLPV FVLTDYVRYK PVIILQGISF IICWLLLLFG ENSTTRP00000012432/1-489 ITNEIFPVWT YSYLVLLFPV FILTDYVRYK PVINLQGISF IITWLLLLFG bmy_03799T0/1-484 ITNEIFPVWT YSYLVLLLPV FILTDYVRYK PVIILQGISF IITWLLLLFG BACU001385/1-435 ITNEIFPVWT YSYLVLLLPV FILTDYVRYK PVIVLQGISF IITWLLLLFG 101 150 ENSP00000258403/1-496 QGVKTMQVVE FFYGMVTAAE VAYYAYIYSV VSPEHYQRVS GYCRSVTLAA ENSBTAP00000037975/1-485 QGVRTMQVLE FFYGMVTATE VAYYAYIYSV VSPEHYQKVS GYCRSVTLVA ENSTTRP00000012432/1-489 QGVKTMQVVE FFYGMVTATE VAYYAYIYSV VSPEHYQKVS GYCRSATLVA bmy_03799T0/1-484 QGVKTMQVVE FFYGMVSATE VAYYAYIYSM VSPEHYQKVS GYCRSATLVA BACU001385/1-435 QGVKTMQVVE FFYGMVSATE VAYYAYIYSV VSPEHYQKVS GYCRSATLVA 151 200 ENSP00000258403/1-496 YTAGSVLAQL LVSLANMSYF YLNVISLASV SVAFLFSLFL PMPKKSMFFH ENSBTAP00000037975/1-485 YTAASVLAQL LVSLAGLSYF YLNVISLASV SVAFLFSLFL PMPKKSMFFH ENSTTRP00000012432/1-489 YTAASVLAQL LVSLANLSYF YLNVISLASV SMAFLFSLFL PMPKKSMFFH bmy_03799T0/1-484 YTVASVLAQL LVSLASLSYF YLNVISLASV SMALLFSLFL PMPKKSMFFH BACU001385/1-435 YTVASVLAQL LVSLANLSYF YLNVLSLASV SMAFLFSLFL PMPKKSMFFH 201 250 ENSP00000258403/1-496 AKPSRE-IKK SSSVNPVLEE THEGEAPGCE EQKPTSEILS TSGKLNKGQL ENSBTAP00000037975/1-485 AKPSQEALPK PPGTDAVSEE PQKNHKPVGK ------VVFT DSGNPDDGQV ENSTTRP00000012432/1-489 AKPSKEGPPK PPGKDAVLEE PQKDHEPGGQ ------EVVT VSGNPYDGHW bmy_03799T0/1-484 AKPSKEAPPK PPGKDAVLEE PQKDHEPAGQ -------VFT VSGNPYDGQW BACU001385/1-435 AKPSKEAPPK PPGKDAVLEE PQKDHEPAGQ -------VFT VSGNPYDGQW 251 300 ENSP00000258403/1-496 NSLKPSNVTV DVFVQWFQDL KECYSSKRLF YWSLWWAFAT AGFNQVLNYV ENSBTAP00000037975/1-485 TNPKPGNVAL RVFVQWLQDL KQCYSSKHLF YWSLWWAFST AGYNQVLNYV ENSTTRP00000012432/1-489 SSPKPESVVL RVFVQWLQDL KECYSSKHLF YWSLWWSFST AGFNQVLNYV bmy_03799T0/1-484 SSPKPENVAL RVFVEWLQDL KECYSSKHLF YWSLWWAFST AGFNQVLNYV BACU001385/1-435 SSPKPENVAL RVFVQWLQDL KECYSSKHLF YWSLWWAFST AGFNQVLNYV 301 350 ENSP00000258403/1-496 QILWDYKAPS QDSSIYNGAV EAIATFGGAV AAFAVGYVKV NWDLLGELAL ENSBTAP00000037975/1-485 QVLWDYKAPS QSS-VYNGAV EAIATFGGAL AAFAVGYVKV NWDLLGELAL ENSTTRP00000012432/1-489 QVLWDYKAPG QSSIIYNGAV EAIATFGGAL AAFAVGYVKV NWDLLGELAL bmy_03799T0/1-484 QVLWDYKAPG QSSVIYNGAV EALATFGGAL AAFAVGFVKV NWDLLGELAL BACU001385/1-435 QVLWDYKAPG QSSVIYNGAV EAIATFGGAL AAFAVGFVKV NWDLLGELAL 351 400 ENSP00000258403/1-496 VVFSVVNAGS LFLMHYTANI WACYAGYLIF KSSYMLLITI AVFQIAVNLN ENSBTAP00000037975/1-485 AIFSVVNAGS LFLMHYTTNI WACYAGYLIF KTVYMLLITI AVFQIAVNLS ENSTTRP00000012432/1-489 AIFSVVNAGS LFLMHYTTSI WACYAGFLLF KTGYMLLITI AVFQIAVNLS bmy_03799T0/1-484 AIFSVVNAGS LFLMHYTTNI WVCYAGYLLF KTGYMLLITI AVFQIAVNLS BACU001385/1-435 AIFSVVNAGS LFLMHYTTNI WVCYAGYLLF KTGYMLLITI AVFQIAVNLS 401 450 ENSP00000258403/1-496 VERYALVFGI NTFIALVIQT IMTVIVVDQR GLNLPVSIQF LVYGSYFAVI ENSBTAP00000037975/1-485 VERYALVFGI NTFIALVIQT IITVIVVDQG GLGLPISIQF LVYGSYFAAI ENSTTRP00000012432/1-489 VERYALVFGI NTFIALVIQT VITVIVVDQG GLRLPVHIQF LVYGSYFAVI bmy_03799T0/1-484 VERYALVFGI NTFIALVIQT IITVIVVDQG GLGLPISIQF LVYGSYFAVI BACU001385/1-435 VERYALVFGI NTFIALVIQT IITVIVVDQG GLGLPISIQF LVYGSYFAVI 451 500 ENSP00000258403/1-496 AGIFLMRSMY ITYSTKSQKD VQSPA-PSEN PDVSHPEEES NIIMSTKL ENSBTAP00000037975/1-485 AGIFLMRSIY IIYSAACRKR VQNSAVTSQN QYRPHPEEPK NV------ ENSTTRP00000012432/1-489 AGIFLMRSIF IIYSTKCRKT VQSSA-TSQN PYGPHPEEPK NN--MTRL bmy_03799T0/1-484 AGIFLMRSIF IIYSTKCRKT VQSSA-TSQN PYGLHPEEPE NN------ BACU001385/1-435 ASIFLMRSIF IIYSTKCRKT VQSSA-TSQN PYGPHPEEPE NN------