KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:48:13 2014 Check: 00 .. Name: bmy_13377T0/1-672 Len: 771 Check: 3605 Weight: 1.00 Name: ENSP00000321617/1-726 Len: 771 Check: 9530 Weight: 1.00 Name: ENSTTRP00000009518/1-689 Len: 771 Check: 9079 Weight: 1.00 Name: ENSBTAP00000037989/1-728 Len: 771 Check: 5775 Weight: 1.00 // 1 50 bmy_13377T0/1-672 MSPAPAAALG VC----VGLP ADTPVLQGLR LVSHAPGEAL AQALQTSCPG ENSP00000321617/1-726 MSPAPDAAPA PASISLFDLS ADAPVFQGLS LVSHAPGEAL ARAPRTSCSG ENSTTRP00000009518/1-689 MSPTPAAAQA SVSVSLFDLK ADTPVLQGLR LVSHAPGEAL AQALQVSCPG ENSBTAP00000037989/1-728 MSPAPAATQA PVSVSLFDLS TDAPVLQGLR LVSHFPEEAL AQSLQTSCPG 51 100 bmy_13377T0/1-672 IWEGLGWTRE GRSGERISPE RKPLQGPLDI SEKLFCSTCD QTFQNHQEQR ENSP00000321617/1-726 ---------- --SGERESPE RKLLQGPMDI SEKLFCSTCD QTFQNHQEQR ENSTTRP00000009518/1-689 ---------- --SGERISPE RKPLQGPLDI SEKLFRSTCD QTFQNHQEQR ENSBTAP00000037989/1-728 ---------- --SEEQISPE RRPFQGALDI SEKLFCSTCD QVFQNHQEQR 101 150 bmy_13377T0/1-672 EHYKLDWHQF NLKQHLKDKP LLSALDFEKQ SSTGDLSSIS GSEDSDLASE ENSP00000321617/1-726 EHYKLDWHRF NLKQRLKDKP LLSALDFEKQ SSTGDLSSIS GSEDSDSASE ENSTTRP00000009518/1-689 EHYKLDWHRF NLKQHLKDKP LRSALDFEKQ SSTGDLSSIS GSEDSDSASE ENSBTAP00000037989/1-728 EHYKLDWHRF NLKQRLKDKP LLSALDFEKQ SSTGDLSSIS GSEDSDSDSE 151 200 bmy_13377T0/1-672 EDLQILDEER AEFEKPNRPR GFHPHRVLFQ NTQGQFLYAY CCVLGPRQ-- ENSP00000321617/1-726 EDLQTLDRER ATFEKLSRPP GFYPHRVLFQ NAQGQFLYAY RCVLGPHQ-- ENSTTRP00000009518/1-689 EDLQILDEER AEFEKPD-PR GFHPHRVLFQ NAQGQFLDAY CCVLGPRQ-- ENSBTAP00000037989/1-728 EDLQILDEER ADLEKPTRPQ GFHPHRVLFQ NAQGQFLYAY RCVLGPRHAS 201 250 bmy_13377T0/1-672 ---------- ---------- ASASTGCVV- -------NSS LLQ--EVLTH ENSP00000321617/1-726 ------DPPE EAELLLQNLQ SRGPRDCVVL MAAAGHFAGA IFQGREVVTH ENSTTRP00000009518/1-689 ------VPPE AAEVLLQNLK SGGPRDCVVL MAAAGHFAGA VFQGQEALTH ENSBTAP00000037989/1-728 ASTYCVVPLE ESELLLQNLQ TGGPRDCVVL MAAAGHFAGA IFQGREVLTH 251 300 bmy_13377T0/1-672 KTFHCYTVRA KWGTAQGLRD AWGAASCSAG ANLRRCSEAM LYKDVRDLLA ENSP00000321617/1-726 KTFHRYTVRA KRGTAQGLRD ARGGPSHSAG ANLRRYNEAT LYKDVRDLLA ENSTTRP00000009518/1-689 KTFYCYTVRA KWGTAQGLRD A-GAASRSAG ANLRRYSEDM LYKDVRDLLA ENSBTAP00000037989/1-728 KTFHRYTVRA KRGTAQGLRD ARGAAAHSAG ASLRRYNEAA LYKEVRDLLA 301 350 bmy_13377T0/1-672 GPDWAKVLEK AGTILMRAPH SGRSLFFGGR EAPLQRGDPR LWVIPLATRR ENSP00000321617/1-726 GPSWAKALEE AGTILLRAPR SGRSLFFGGK GAPLQRGDPR LWDIPLATRR ENSTTRP00000009518/1-689 GPD-AKVLEK AGTILMRAPR SGRSLFFGGH EAPLQW-DPR LWDIPLATRR ENSBTAP00000037989/1-728 GPAWAKALEE AGTILLRAPR SGRSLFFGGR EAPLRRGDPR LWDIPLATRR 351 400 bmy_13377T0/1-672 PTFQELQ--- ---------- ---------- --------LR E--RKAIEEE ENSP00000321617/1-726 PTFQELQRVL HKLTTLHVYE EDPREAVRLH SPQTHWKTVR EERKKPTEEE ENSTTRP00000009518/1-689 PTFQELQRVL HKLTTSHVHE EHPRETVRLD LPQTNWKTMR G--RKAIEEE ENSBTAP00000037989/1-728 PTFQELQRVV HKLTTLHIHG EDPRETSRLD LPQTHRKRVR E--RKVIEEE 401 450 bmy_13377T0/1-672 -RKVRSDENE ALGRNEEAPK QDGSNIANFS LGSESEGEDG SQVELELVEV ENSP00000321617/1-726 IRKICRDEKE ALGQNEESPK Q--------- -GSGSEGEDG FQVELELVEL ENSTTRP00000009518/1-689 -RKVRSDENE ALGRNAEAPK Q--------- -GSESEGEDG FQVELELVEV ENSBTAP00000037989/1-728 -SKVPSDENE ALGQNKEAPT Q--------- -GSESEGGDG SQVELELVEV 451 500 bmy_13377T0/1-672 TLGMLVLREF EVLPKQRRRK RNKRERNQDL EAGAQMTVSQ QPQEDEAFSE ENSP00000321617/1-726 TVGTLDLCES EVLPKRRRRK RNKKEKSRDQ EAGAHRTLLQ QTQEEEPSTQ ENSTTRP00000009518/1-689 TLGLLDLCEF EVLPKQRRRK RNKRERNQDL EAGAQMTLSQ QPQGDEAFSE ENSBTAP00000037989/1-728 TLGTLDLREF DVFPKQRRRK RNKRERKQDL ESGAQMTLSQ QPKEDEALSG 501 550 bmy_13377T0/1-672 S-----APLG PSPDEAKSPA RA--LGCAFD CLPSWRWGML KLRLAASPLD ENSP00000321617/1-726 SSQAVAAPLG PLLDEAKAPG QPELWNALLA ACRAGDVGVL KLQLAPSPAD ENSTTRP00000009518/1-689 S-----APLG PSPDEAKSPG QPELWDVLLA ACQAGDGG-L KLRLAASPLD ENSBTAP00000037989/1-728 S-----APLR PPLDEATSPC QSELWDVLLA ACRAGDVGML KDRLTASPLH 551 600 bmy_13377T0/1-672 PGVLSLLSAP LGSGGFTLLH AAAAAGRGSV RTL-----GP SHCTQLQLTN ENSP00000321617/1-726 PRVLSLLSAP LGSGGFTLLH AAAAAGRGSV VRLLLEAGAD PTVQDSRARP ENSTTRP00000009518/1-689 PGVLSLLSAP LGSGGFTLLH AAATAGRGSV ---------- ----DSRTRP ENSBTAP00000037989/1-728 PGVLPLLSAP LGSGGFTLLH AAAAAGRGSV VRLLLEAGAD PTVQDSRARP 601 650 bmy_13377T0/1-672 QHVMSSGGSW RRIQTLMITA KLRATDS--- --PGGAAGHS EKGAEGSPAA ENSP00000321617/1-726 PYTVAADKST RNEFRRFMEK NPDAYDYNKA QVPGPLTPEM EARQATRKRE ENSTTRP00000009518/1-689 PYTVAADKST RDEFRSFMEK NPDAYDYSKA QVPGPLTAEM EARQAIRKRE ENSBTAP00000037989/1-728 PYTVAADRST RNEFRRFMEK NPDAYDYSKA QVPGPLTAEM EARQATRRRE 651 700 bmy_13377T0/1-672 PGGAAAEAAG AEA------- -GAGRAAEIC CPQRLREGSS GCRAPTGCPV ENSP00000321617/1-726 QKAARRQREE QQQRQQEQEE REREEQRRFA ALSDREKRAL AAERRLAAQL ENSTTRP00000009518/1-689 RKAARRHRQE QQW------- -EQGEQRRFA ALSD-EKGAL AAEHRLAARL ENSBTAP00000037989/1-728 QKAARRHREE QQRKQQEQEK QEQEEQQRFA ALSDREKRAL AAERRLAAQL 701 750 bmy_13377T0/1-672 GSPYPSGPRP CHHQRSTPLE LWD--IPPRP HIPFHYFD-- FFPLHMLPPG ENSP00000321617/1-726 GAPTSPIPDS AIVNTRR--C -WSCGASLQG LTPFHYLDFS FCSTRCLQDH ENSTTRP00000009518/1-689 GAPTPQVPDS AIISVR---C HWSCGTSLQG LIPFHYFDF- FLSTRCLQDH ENSBTAP00000037989/1-728 GALNPQTPDP AITVSNIPRC -WSCGMSLQG LVPFHYLDFS FCSTRCLRDH 751 800 bmy_13377T0/1-672 SSLSGWEALF LISYSSTWGQ L ENSP00000321617/1-726 RRQAGRPSS- ---------- - ENSTTRP00000009518/1-689 RCRAGKPSS- ---------- - ENSBTAP00000037989/1-728 RCQAGKPSS- ---------- -