KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:13 2014 Check: 00 .. Name: ENSP00000328405/1-735 Len: 776 Check: 9119 Weight: 1.00 Name: ENSTTRP00000014200/1-706 Len: 776 Check: 3640 Weight: 1.00 Name: ENSBTAP00000038002/1-734 Len: 776 Check: 3424 Weight: 1.00 Name: bmy_03941T0/1-625 Len: 776 Check: 3642 Weight: 1.00 Name: BACU008121/1-775 Len: 776 Check: 7640 Weight: 1.00 // 1 50 ENSP00000328405/1-735 ---------- ---------- ---------- ---------- -MAKERGLIS ENSTTRP00000014200/1-706 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038002/1-734 ---------- ---------- ---------- ---------- -MAKERGLIS bmy_03941T0/1-625 ---MLYM--- --ESYPWKQS SRSQKYYYQA AFVSILKKKR KMAKERGLIS BACU008121/1-775 MQALVWLRDS EVQSYPWKQS SRSQKYYYQA AFVSILKKKR KMAKERGLIS 51 100 ENSP00000328405/1-735 PSDFAQLQKY MEYSTKKVSD VLKLFEDGEM AKYVQGDAIG YEGFQQFLKI ENSTTRP00000014200/1-706 ---------- ------KVSD VLKLFEDGEM AEYLQGDAIG YEGFQQFLKI ENSBTAP00000038002/1-734 PSDFAQLQKY MEYSTKKVSD VLKLFEDGEM AEYLQGDAIG YEGFQQFLKI bmy_03941T0/1-625 PSDFAQLQKY MEYSTKKVSD VLKLFEDGEM AEYLQGDAIG YEGFQQFLKI BACU008121/1-775 PSDFAQLQKY MEYSTKKVSD VLKLFEDGEM AEYLQGDAIG YEGFQQFLKI 101 150 ENSP00000328405/1-735 YLEVDNVPRH LSLALFQSFE TGHCLNETNV TKDVVCLNDV SCYFSLLEGG ENSTTRP00000014200/1-706 YLEVDNVPSP LSLALFQSFQ TSYCLEET-V KEDVVCLSDV SCYFSLLEGG ENSBTAP00000038002/1-734 YLEVDNVPDH LSQALFQSFQ TGYYIEDT-V REDVVCLSDV SCYFSLLEGG bmy_03941T0/1-625 YLEVDNVPSP LSLALFQSFQ TSYCLEET-V KE-------- ----GFLKAD BACU008121/1-775 YLDVDNVPSP LSLALFQSFQ TSYCLEET-V KEDVVCLSDV SCYFSLLEGG 151 200 ENSP00000328405/1-735 RPEDKLEFTF KLYDTDRNGI LDSSEVDKII LQMMRVAEYL DWDVSELRPI ENSTTRP00000014200/1-706 RPEDKLEFTF KLYDTDRNGI LDSSEVDKII IQMMRVAEYL DWEVSELRPI ENSBTAP00000038002/1-734 RPEDKLEFTF KLYDTDRNGI LDSSEVDRII IQMMRMAEYL DWDVSELRPI bmy_03941T0/1-625 RPD---KVTF KLYDTDRNGI LDSSEVDKII IQMMRVAEYL DWEVSELRPI BACU008121/1-775 RPEDKLEFTF KLYDTDRNGI LDSSEVDKII IQMMRVAEYL DWEVSELRPI 201 250 ENSP00000328405/1-735 LQEMMKEIDY DGSGSVSQAE WVRAGATTVP LLVLLGLEMT LKDDGQHMWR ENSTTRP00000014200/1-706 LQEMMKEIDY DGSGSVSLAE WLRAGATTVP LLVLLGLEMT LKDNGQHMWR ENSBTAP00000038002/1-734 LQEMMKEIDY DGSGSVSLAE WLRAGATTVP LLVLLGLEMT LKDNGQHMWR bmy_03941T0/1-625 LQEMMKEIDY DGSGSVSLAE WLRAGATTVP LLVLLGLEMT LKDNGQHMWR BACU008121/1-775 LQEMMKEIDY DGSGSVSLAE WLRAGATTVP LLVLLGLEMT LKDNGQHMWR 251 300 ENSP00000328405/1-735 PKRFPRPVYC NLCESSIGLG KQGLSCNLCK YTVHDQCAMK ALPCEVSTYA ENSTTRP00000014200/1-706 LKRFSRPVYC NLCESSIGLG KQGLSCNXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038002/1-734 PKRFPRPVYC NLCESSIGLG KQGLSCNLCK YIVHDQCAMK ALPCEVSTYA bmy_03941T0/1-625 PKRFPRPVYC NLCESSIGLG KQGLSCNLCK YVVHDQCAMK ALPCEVSTYA BACU008121/1-775 PKRFPRPVYC NLCESSIGLG KQGLSCNLCK YVVHDQCAMK ALPCEVSTYA 301 350 ENSP00000328405/1-735 KSRKDIGVQS HVWVRGGCES GRCDRCQKKI RIYHSLTGLH CVWCHLEIHD ENSTTRP00000014200/1-706 XXXXXXXXQS HVWVRGGCES GRCDRCQKKI RIYHSLVGLH CVWCHVEIHD ENSBTAP00000038002/1-734 KSRKDIGVQS HVWVRGGCES GRCDRCQKKI RIYHSLVGLH CVWCHLEIHD bmy_03941T0/1-625 KSRKDIGVQS HVWVRGGCES GRCDRCQKKI RIYHSLVGLH CVWCHLEIHD BACU008121/1-775 KSRKDIGVQS HVWVRGGCES GRCDRCQKKI RIYHSLVGLH CVWCHLEIHD 351 400 ENSP00000328405/1-735 DCLQAVGHEC DCGLLRDHIL PPSSIYPSVL ASGPDRKNSK TSQKTMDDLN ENSTTRP00000014200/1-706 DCLPAMGHEC DCGLLRDHIL RPSSIYPRVL ASGQERKISK TNQKTVDDLN ENSBTAP00000038002/1-734 DCLPAMGHEC DCGLLRDHIL PPSSIYPSVL ASGQERKTSK ISQKTMDDLS bmy_03941T0/1-625 DCLPAMGHEC DCGLLRDHIL RPSSIYPSVL ---------- ---------- BACU008121/1-775 DCLPAMGHEC DCGLLRDHIL RPSSIYPSVL ASGQERKISK TNQKTVDDLN 401 450 ENSP00000328405/1-735 LSTSEALRID PVPNTHPLLV FVNPKSGGKQ GQRVLWKFQY ILNPRQVFNL ENSTTRP00000014200/1-706 LSTSEALRID PVSNTHPLLV FVNPKSGGKQ GERVLWKFQY LLNPRQVFNL ENSBTAP00000038002/1-734 LSTSEALRID PVSNTHPLLV FVNPKSGGKQ GERVLWKFQY LLNPRQVFNL bmy_03941T0/1-625 --------ID PVSNTHPLLV FVNPKSGGKQ GERVLWKFQY LLNPRQVFNL BACU008121/1-775 LSTSEALRID PVSNTHPLLV FVNPKSGGKQ GERVLWKFQY LLNPRQVFNL 451 500 ENSP00000328405/1-735 LKDGPEIGLR LFKDVPDSRI LVCGGDGTVG WILETIDKAN LPVLPPVAVL ENSTTRP00000014200/1-706 LKDGPEPGLR FFRDVPDYRV LVCGGDGTVG WILETIDKAN LPFVPPVAVL ENSBTAP00000038002/1-734 LKDGPEPGLR FFRDVPDYRI LVCGGDGTVG WILESIDKAN LPFVPPVAVL bmy_03941T0/1-625 LKDGPEPGLR FFRDVPDYRI LVCGGDGTVG WILETIDKAN LPVVPPVAVL BACU008121/1-775 LKDGPEPGLR FFRDVPDYRI LVCGGDGTVG WILETIDKAN LPVVPPVAVL 501 550 ENSP00000328405/1-735 PLGTGNDLAR CLRWGGGYEG QNLAKILKDL EMSKVVHMDR WSVEVIPQQT ENSTTRP00000014200/1-706 PLGTGNDLAR CLRWGGGYEG QNLGKILKDL ETSKVVHMDR WSVEVIPQQT ENSBTAP00000038002/1-734 PLGTGNDLAR CLRWGGGYEG QNLGKILKDL ETSKVVHMDR WSVEVIPQQT bmy_03941T0/1-625 PLGTGNDLAR CLRWGGGYEG QNLGKILKDL ETSKVVHMDR WSVEVIPQQT BACU008121/1-775 PLGTGNDLAR CLRWGGGYEG QNLGKILKDL ETSKVVHMDR WSVEVIPQQT 551 600 ENSP00000328405/1-735 EEKSDPVPFQ IINNYFSIGV DASIAHRFHI MREKYPEKFN SRMKNKLWYF ENSTTRP00000014200/1-706 EEKSDPVPFQ IINNYFSIGV DASIAHRFHI MREKYPEKFN SRMKNKLWYF ENSBTAP00000038002/1-734 EEKSDPVPFQ IINNYFSIGV DASIAHRFHI MREKYPEKFN SRMKNKLWYF bmy_03941T0/1-625 EEKSDPVPFQ IINNYFSIGV ---------- ---------- ---------- BACU008121/1-775 EEKSDPVPFQ IINNYFSIGV DASIAHRFHI MREKYPEKFN SRMKNKLWYF 601 650 ENSP00000328405/1-735 EFATSESIFS TCKKLEESLT VEICGKPLDL SNLSLEGIAV LNIPSMHGGS ENSTTRP00000014200/1-706 EFATS-SIFS TCKL--ESLT VEICGKPLDL SNLSLEGIAV LNIPSTHGGS ENSBTAP00000038002/1-734 EFATSESIFS TCKKLEESLT VEICGKPLDL SNLSLEGIAV LNIPSTHGGS bmy_03941T0/1-625 ---------- ---------- --ICGKPLDL SNLSLEGIAV LNIPSTHGGS BACU008121/1-775 EFATSESIFS TCKKLEESLT VEICGKPLDL SNLSLEGIAV LNIPSTHGGS 651 700 ENSP00000328405/1-735 NLWGDTRRPH GDIYGINQAL GATAKVITDP DILKTCVPDL SDKRLEVVGL ENSTTRP00000014200/1-706 NLWGDTKRPH SDIHGINQAL GATAKVITDP DILKTCVPDL SDKRLEVVGL ENSBTAP00000038002/1-734 NLWGDTKRPH GDIHGINQAL GATAKVITDP DILKTCVPDL SDKRLEVVGL bmy_03941T0/1-625 NLWGDTKRPH SDIHGINQAL GATAKVITDP DILKTCVPDL SDKRLEVVGL BACU008121/1-775 NLWGDTKRPH SDIHGINQAL GATAKVITDP DILKTCVPDL SDKRLEVVGL 701 750 ENSP00000328405/1-735 EGAIEMGQIY TKLKNAGRRL AKCSEITFHT TKTLPMQIDG EPWMQTPCTI ENSTTRP00000014200/1-706 EGAIEMGQIY TKLKNAGHRL AKCSEITFHT TKTLPMQIDG EPWMQTPCTI ENSBTAP00000038002/1-734 EGAIEIGQIY TKLKNAGHRL AKCSEITFHT TKTLPMQIDG EPWMQTPCTI bmy_03941T0/1-625 EGAIEMGQIY TKLKNAGHRL AKCSEITFQ- ---------- ---------- BACU008121/1-775 EGAIEMGQIY TKLKNAGHRL AKCSEITFHT TKTLPMQIDG EPWMQTPCTI 751 800 ENSP00000328405/1-735 KITHKNQMPM LMGPPPRSTN FFGFLS ENSTTRP00000014200/1-706 KITHRNQMPM LVGPPPRSSN FFGFLC ENSBTAP00000038002/1-734 KITHRNQMPM LVGPPPRSSN FFGFLC bmy_03941T0/1-625 ---------- ---------- ------ BACU008121/1-775 KITHRNQMPM LMGPPPRSSN FFGFLC