KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:14 2014 Check: 00 .. Name: bmy_03935T0/1-547 Len: 721 Check: 2712 Weight: 1.00 Name: ENSP00000262032/1-585 Len: 721 Check: 7863 Weight: 1.00 Name: ENSBTAP00000038008/1-585 Len: 721 Check: 6594 Weight: 1.00 Name: BACU008126/1-652 Len: 721 Check: 3255 Weight: 1.00 Name: ENSTTRP00000014225/1-481 Len: 721 Check: 2558 Weight: 1.00 // 1 50 bmy_03935T0/1-547 MHTPPALPRR FQGGGRVRTP GSHRQGKDNL ERDPSGGCVP DFLPQAQDSN ENSP00000262032/1-585 MHTPPALPRR FQGGGRVRTP GSHRQGKDNL ERDPSGGCVP DFLPQAQDSN ENSBTAP00000038008/1-585 MHTPPALARR FQGGGRARTP GSQRQGKDNL ERDPSGGCVP DFLPQAQDSN BACU008126/1-652 MTAVPLTSRN ---------- ---------- ---------P RFL------- ENSTTRP00000014225/1-481 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_03935T0/1-547 HFIMESLFCE SSGDSSLEKE FLGAPVGPSV SSPNSQHSSP SRSLSEWALR ENSP00000262032/1-585 HFIMESLFCE SSGDSSLEKE FLGAPVGPSV STPNSQHSSP SRSLSANSIK ENSBTAP00000038008/1-585 HFIMESLFCE SSGDSSLEKE FLGAPVGPSV STPNSQHSSP SRSLSANSIK BACU008126/1-652 ---------E GSGDSSLEKE FLGAPVGPSV SSPNSQHSSP SRSLSANSIK ENSTTRP00000014225/1-481 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_03935T0/1-547 GSVLNNSLWP RVLGLAPFPL PHTSSPHLRV RLFPRGPYKA EFVCVAQPCL ENSP00000262032/1-585 VEMYSDEESS RLLGPDERLL EKDDS----- ---------- ---VIVEDSL ENSBTAP00000038008/1-585 VEMYSDEESS RLLGPDERLL EKDDS----- ---------- ---VIVEDSL BACU008126/1-652 VEMYSDEESS RLLGPDERLL EKDDS----- ---------- ---VIVEDSL ENSTTRP00000014225/1-481 --MYSDEESS RLLGPDERLL EKDDS----- ---------- ---VIVEDSL 151 200 bmy_03935T0/1-547 SE---MCSEH LPS---PG-- ---RGEAECE RLGLTFTVP- ----HARSSG ENSP00000262032/1-585 SEPLGYCDGS GPEPHSPGGI RLPNGKLKCD VCGMVCIGPN VLMVHKRSHT ENSBTAP00000038008/1-585 SEPLGYCDGS GPEPHSPGGI RLPNGKLKCD VCGMVCIGPN VLMVHKRSHT BACU008126/1-652 SEPLGYCDGS GPEPHSPGGI RLPNGKLKCD VCGMVCIGPN VLMVHKRSHT ENSTTRP00000014225/1-481 SEPLGYCDGS GPEPHSPGGI RLPNGKLKCD VCGMVCIGPN VLMVHKRSHT 201 250 bmy_03935T0/1-547 LCLPLAGERP FHCNQCGASF TQKGNLLRHI KLHSGEKPFK CPFCNYACRR ENSP00000262032/1-585 ------GERP FHCNQCGASF TQKGNLLRHI KLHSGEKPFK CPFCNYACRR ENSBTAP00000038008/1-585 ------GERP FHCNQCGASF TQKGNLLRHI KLHSGEKPFK CPFCNYACRR BACU008126/1-652 ------GERP FHCNQCGASF TQKGNLLRHI KLHSGEKPFK CPFCNYACRR ENSTTRP00000014225/1-481 ------GER- FHCNQCGASF TQKSN-LRHI KLHSGEKPFK CPFCNYACRR 251 300 bmy_03935T0/1-547 RDALTGHLRT HSVSSPTVGK PYKCNYCGRS YKQQSTLEEH KERCHNYLQS ENSP00000262032/1-585 RDALTGHLRT HSVSSPTVGK PYKCNYCGRS YKQQSTLEEH KERCHNYLQS ENSBTAP00000038008/1-585 RDALTGHLRT HSVSSPTVGK PYKCNYCGRS YKQQSTLEEH KERCHNYLQS BACU008126/1-652 RDALTGHLRT HSVSSPTVGK PYKCNYCGRS YKQQSTLEEH KERCHNYLQS ENSTTRP00000014225/1-481 RDALTGHLRT HSVSSPTVGK PYKCNYCGRS YKQQSTLEEH KERCHNYLQS 301 350 bmy_03935T0/1-547 LSTEAQALAG QSGDEIRDLE MVPDSMLHSS SERPTFIDRL ANSLTKRKRS ENSP00000262032/1-585 LSTEAQALAG QPGDEIRDLE MVPDSMLHSS SERPTFIDRL ANSLTKRKRS ENSBTAP00000038008/1-585 LSTEAQALAG QSGDEIRDLE MVPDSMLHSS SERPTFIDRL ANSLTKRKRS BACU008126/1-652 LSTEAQALAG QSGDEIRDLE MVPDSMLHSS SERPTFIDRL ANSLTKRKRS ENSTTRP00000014225/1-481 LSTEAQALAG QSGDEIRDLE MVPDSMLHSS SERPTFIDRL ANSLTKRKRS 351 400 bmy_03935T0/1-547 TPQKFV---- ---------- ---------- ---------- ---------- ENSP00000262032/1-585 TPQKFVGEKQ MRFSLSDLPY DVNSGGYEKD VELVAHHSLE PGFGSSLAFV ENSBTAP00000038008/1-585 TPQKFVGEKQ MRFSLSDLPY DVNSGGYEKD VELVAHHGLE PGFGGSLAFV BACU008126/1-652 TPQKFVGEKQ MRFSLSDLPC DVNSGGYEKD VELVAHHGLE PGFGGSLAFV ENSTTRP00000014225/1-481 TPQKFVGEKQ MRFSLSDLPY DVNSGGYEKD VELVAHHGLE PGFGGSLAFV 401 450 bmy_03935T0/1-547 --EHLRPLRL PPTNCISELT PVISSVYTQM QPLPGRLELP GSREAGEGPE ENSP00000262032/1-585 GAEHLRPLRL PPTNCISELT PVISSVYTQM QPLPGRLELP GSREAGEGPE ENSBTAP00000038008/1-585 GAEHLRPLRL PPTNCISELT PVISSVYTQM QPLPGRLELP GSREAGEGPE BACU008126/1-652 GAEHLRPLRL PPTNCISELT PVISSVYTQM QPLPGRLELP GSREAGEGPE ENSTTRP00000014225/1-481 GAEHLRPLRL PPTNCISELT PVISSVYTQM QPLPGRLELP GSREAGEGPE 451 500 bmy_03935T0/1-547 DLADGGPLLY RARGPLTDPG ASPSNGCQDS TDTESNHEDR VGAVVSLPQG ENSP00000262032/1-585 DLADGGPLLY RPRGPLTDPG ASPSNGCQDS TDTESNHEDR VAGVVSLPQG ENSBTAP00000038008/1-585 DLADGGPLLY RARGPLTDPG ASPSNGCQDS TDTESNHEDR VGGVVSLPQG BACU008126/1-652 DLADGGPLLY RARGPLTDPG ASPSNGCQDS TDTESNHEDR VGAVVSLPQG ENSTTRP00000014225/1-481 DLADGGPLLY RARGPLTDPG ASPSNGCQDS TDTESNHEDR VGAVVSLPQG 501 550 bmy_03935T0/1-547 PPPQPPPTIV VGRPSPAYAK EDPKPQEGLL RGTPGPSKEV LRVVGESGEP ENSP00000262032/1-585 PPPQPPPTIV VGRHSPAYAK EDPKPQEGLL RGTPGPSKEV LRVVGESGEP ENSBTAP00000038008/1-585 PPPQPPPAVV VGRPSPAYAK EDPKPQEGLL RGTPGPSKEV LRVVGESGEP BACU008126/1-652 PPPQPPPTIV VGRPSPAYAK EDPKPQEGLL RGTPGPSKEV LRVVGESGEP ENSTTRP00000014225/1-481 PPPQPPPTIV VGRPSPAYAK EDPKPQEGLL QGTPGPSKEV LRVVGESGEP 551 600 bmy_03935T0/1-547 VKAFKCEHCR ILFLDHVMFT IHMGCHGFRD PFECNICGYH SQDRYEFSSH ENSP00000262032/1-585 VKAFKCEHCR ILFLDHVMFT IHMGCHGFRD PFECNICGYH SQDRYEFSSH ENSBTAP00000038008/1-585 VKAFKCEHCR ILFLDHVMFT IHMGCHGFRD PFECNICGYH SQDRYEFSSH BACU008126/1-652 VKAFKCEHCR ILFLDHVMFT IHMGCHGFRD PFECNICGYH SQDRYEFSSH ENSTTRP00000014225/1-481 VKAFKCEHCR ILFLDHVMFT IHMGCHGFRD PFECNICGYH SQDRYEFSSH 601 650 bmy_03935T0/1-547 IVRGEHKVG- ---------- ---------- ---------- ---------- ENSP00000262032/1-585 IVRGEHKVG- ---------- ---------- ---------- ---------- ENSBTAP00000038008/1-585 IVRGEHKVG- ---------- ---------- ---------- ---------- BACU008126/1-652 IVRGEHKTKK RRNNGRAKKG RGHVQPIRCT NCARCVPKDK AIKKFVIRNI ENSTTRP00000014225/1-481 IVRGEHKVG- ---------- ---------- ---------- ---------- 651 700 bmy_03935T0/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000262032/1-585 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038008/1-585 ---------- ---------- ---------- ---------- ---------- BACU008126/1-652 VEAAAVRDIS EASVFDAYVL PKLYVKLHYC VSCAIHSKVV RNRSREARKD ENSTTRP00000014225/1-481 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_03935T0/1-547 ---------- ---------- - ENSP00000262032/1-585 ---------- ---------- - ENSBTAP00000038008/1-585 ---------- ---------- - BACU008126/1-652 RTPPPRFRPA GAAPRPPPKP M ENSTTRP00000014225/1-481 ---------- ---------- -