KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:48:19 2014 Check: 00 ..
Name: bmy_13309T0/1-628 Len: 866 Check: 2473 Weight: 1.00
Name: ENSP00000364520/1-839 Len: 866 Check: 8801 Weight: 1.00
Name: ENSBTAP00000038055/1-837 Len: 866 Check: 8710 Weight: 1.00
Name: BACU005710/1-813 Len: 866 Check: 5025 Weight: 1.00
Name: ENSTTRP00000010926/1-761 Len: 866 Check: 56 Weight: 1.00
//
1 50
bmy_13309T0/1-628 ---------- ---------- ---------- ---------- ----------
ENSP00000364520/1-839 MGPRAKTISS LFFLLWVLAE PAENSDFYLP GDYLLGGLFS LHANMKGIVH
ENSBTAP00000038055/1-837 MGPQGRAACS LLFLLQALAE PAENSEFFLP GDYLLGGLFT LHANVKGIVH
BACU005710/1-813 MGAQGRVVCS LIFLLRALAE LAENSEFYLL GDYLLGGLFT LHANMKGIVH
ENSTTRP00000010926/1-761 MGPRA-GVCS LSFLLIFLAE LTENSEFSLL EDYLLGGLFT LHANVKGTVH
51 100
bmy_13309T0/1-628 ---------- ---------- ---------- MKVLGYNLMQ ATRFAVEEIS
ENSP00000364520/1-839 LNFLQVPMCK E--------- --------YE VKVIGYNLMQ AMRFAVEEIN
ENSBTAP00000038055/1-837 LNYLKVPKCK E--------- --------YE MKVLGYNLMQ AMRFAVEEVN
BACU005710/1-813 LKYLQVPKCK EGVSSARLEV MVWAGLSRYE MKVLGYNLTQ ATRFAVEEIN
ENSTTRP00000010926/1-761 LNYLQVPKCN E--------- --------YE MKVLGYNLMQ AMRFAAEEIN
101 150
bmy_13309T0/1-628 NDSSLLPSVL LGYEMVDTCY MSNNVHPVLS FLSQDDYFPP IQEDYSHYVP
ENSP00000364520/1-839 NDSSLLPGVL LGYEIVDVCY ISNNVQPVLY FLAHEDNLLP IQEDYSNYIS
ENSBTAP00000038055/1-837 NDSSLLPNVL LGYEMVDSCY MSNNVQPVLY FLSQDDYFLP IQEDYSQYVP
BACU005710/1-813 NDISLLPSVL LGYEMVDTCH MSNNVHPVLY FLSQDDYFPP IQEDYSHYVP
ENSTTRP00000010926/1-761 NDSSLLPSVL LGYEMVDTCY MSNNIHPVLY FLSQDDYFLP IQEDYSHYIP
151 200
bmy_13309T0/1-628 RVVAIIGPEN SESPMTVAHF LSLSLLPQ-- ---------- ----------
ENSP00000364520/1-839 RVVAVIGPDN SESVMTVANF LSLFLLPQ-- -------ITY SAISDELRDK
ENSBTAP00000038055/1-837 RVVAIIGPDN SESTKTVANF LSLFLLPQ-- -------ITY SAFNDELGNK
BACU005710/1-813 RVVAITGPDN SESSMTVAHF LSLSLLPQYL LDPPLRRITY GAINDQ----
ENSTTRP00000010926/1-761 RVVAITGPDT SECPVTVAHF LSLFLLPQ-- -------ITY GTINDQ----
201 250
bmy_13309T0/1-628 LHFPAVLHTA PGVHHQMEAM VQLMLHFRWN WILVLTSSDD YGRGNSQLLS
ENSP00000364520/1-839 VRFPALLRTT PSADHHIEAM VQLMLHFRWN WIIVLVSSDT YGRDNGQLLG
ENSBTAP00000038055/1-837 GRFPAVLRTV PGADHQTEAI VQMLLHFRWN WIVVLASGDD YGRENSHLLS
BACU005710/1-813 LRFPAVLRTA PGVHHQMEAM VQLMLHFRWN GILVLPSSDD YGRGNSKLLS
ENSTTRP00000010926/1-761 LHFPAVLRTA PGVHHQMEAM VPLMRHFRWN WILVLTSSDD YGRGSSQLLS
251 300
bmy_13309T0/1-628 ECLAHHDICI AFQETLPMPQ PNQTMMQQEP ECPEAIVGKL QQSMARAVAV
ENSP00000364520/1-839 ERVARRDICI AFQETLPTLQ PNQNMTSEER QRLVTIVDKL QQSTARVVVV
ENSBTAP00000038055/1-837 QRLAHGDICI AFQETLPTPQ PNQTMTPQDQ ERLEAIVGKL QQSTARVVVV
BACU005710/1-813 ERLAHRDICI AFRETLPMPQ PDQTMTQQEP ERLEAVVGKL QQSTACAVAV
ENSTTRP00000010926/1-761 ECLAHRDICI AFRETLPRPQ PDRTMTQQER ERLEAIMGKL QQSMARVVAV
301 350
bmy_13309T0/1-628 FSPDLALFDF FREVLRQNFT GAVWIASESW AIEPVLHHLT QLQRTGTFLG
ENSP00000364520/1-839 FSPDLTLYHF FNEVLRQNFT GAVWIASESW AIDPVLHNLT ELRHLGTFLG
ENSBTAP00000038055/1-837 FSPELALHNF FREVLRQNLT GAVWIASESW AIDPVLHNLT ELQRAGTFLG
BACU005710/1-813 FSPDLALFDF FREVLRQNFT GAVWIASESW AIYPVLHHLT QLQRTGTFLG
ENSTTRP00000010926/1-761 SSPDLALFNF FREVLRQNST GAVWVASEPW AIEPVLHHLT QLQRTGTFLG
351 400
bmy_13309T0/1-628 ITTQSVPIPG FSEFRARRS- ---------- ---------- ----------
ENSP00000364520/1-839 ITIQSVPIPG FSEFREWGPQ AGPPPLSRTS QSYTCNQECD NCLNATLSFN
ENSBTAP00000038055/1-837 ITTQNVPIPG FSEFRVRRSQ VGRPALNRSS --ANCNQECD TCLNTTESFN
BACU005710/1-813 TTTQSVPIPG FSEFLVRRSQ VSRPALNRSS LGAACNQECD SCMNTTESFN
ENSTTRP00000010926/1-761 FTTQSVPIPG FSEFRVHRSQ VSRPALNRSS PGATCNQECD TCMDTSESFN
401 450
bmy_13309T0/1-628 ---------- ---------- ---------- ---------- ----QLLPEI
ENSP00000364520/1-839 TILRLSGERV VYSVYSAVYA VAHALHSLLG CDKSTCTKRV VYPWQLLEEI
ENSBTAP00000038055/1-837 SILTLSGERV VYSVYSSVYA VAHALHSLLG CNQSGCRRDV VYPWQLLLEI
BACU005710/1-813 SILTLSGERV VYSVYSAVYA VAHAPQNLLG CNQTGCHKEV VYPWQLLLDI
ENSTTRP00000010926/1-761 TILTLSGERV VYSVYSAVYA VAHALQSLLG CNQTGCHKEV VYPWQ-----
451 500
bmy_13309T0/1-628 WKVNFTLLGH QIFFNEQGDL SLYLEVIQWQ WDLSQNPFQS IASYQPSKRQ
ENSP00000364520/1-839 WKVNFTLLDH QIFFDPQGDV ALHLEIVQWQ WDRSQNPFQS VASYYPLQRQ
ENSBTAP00000038055/1-837 RKVNFTLLGH QIFFNEQGDL SLNLEIIQWQ WDLSQNPFRS VASYQPSKRQ
BACU005710/1-813 WKVNFTLLGH QIFFNEQGDL SLHLEVIQWQ WH-------- ----------
ENSTTRP00000010926/1-761 ---------- ---------- ---------- ---------- ----------
501 550
bmy_13309T0/1-628 LKDICDISWH TPNNTIPVSM CSKDCQPGQK KKPAGIHPCC FECIDCLSGT
ENSP00000364520/1-839 LKNIQDISWH TINNTIPMSM CSKRCQSGQK KKPVGIHVCC FECIDCLPGT
ENSBTAP00000038055/1-837 LKHIHDISWN TPNNTIPVSM CSRSCQPGQK KKPVGLHPCC FECIDCLPGT
BACU005710/1-813 ---------- -----IPVSM CSKDCQTGQK KKPAGIHPCC FECIACLSGT
ENSTTRP00000010926/1-761 ---------- -----IAVSM CSKDCHPGQK KKPAGIDPGC FKYIDCLSGT
551 600
bmy_13309T0/1-628 FLNRAT---V SDAHGSLGWG ARVLPDA--- DAAADGIHGG PHV-------
ENSP00000364520/1-839 FLNHTEDEYE CQACPNNEWS YQSETSCFKR QLVFLEWHEA PTIAVALLAA
ENSBTAP00000038055/1-837 FLNQTLDEFD CQPCPSSEWS HRKDTSCFKR QLAFLEWDEA PTIVVVMLAS
BACU005710/1-813 FLNRAAGEFD FQPCPSYEWS RRKDTSCFKW QLAFLEWHAA PTITVVVLAA
ENSTTRP00000010926/1-761 FLNRAAGEFD CQPCPSYEWS RRKDTSCFKR QLAFLEWHEA PTITVVVLAA
601 650
bmy_13309T0/1-628 ---------- ---------- -CRAAHG--- ---------- -LHVPL---P
ENSP00000364520/1-839 LGFLSTLAIL VIFWRHFQTP IVRSAGGPMC FLMLTLLLVA YMVVPVYVGP
ENSBTAP00000038055/1-837 LGFLSTLAIV IIFWRHVRTP VVRSAGGPMC FLMLAPLLMA YTAVPVYVGP
BACU005710/1-813 LGFLSTLAIL IIFWRQFQTP MVRSAGGPVC FLMLTPQLMA YMVVPVYVGP
ENSTTRP00000010926/1-761 LGFLGTLAVS IIFWRQFQTP MVRSAGGPVC FLMLTPQLMA YMVVPVYVGP
651 700
bmy_13309T0/1-628 PGL-----LH ALLH-----C LHLLHHRALF PDHLHLQDGQ TPPTRLRLLV
ENSP00000364520/1-839 PKVSTCLCRQ ALFPLCFTIC ISCIAVRS-F QIVCAFKMAS RFPRAYSYWV
ENSBTAP00000038055/1-837 PTVWSCIFRQ AFFTLCFTIC ISCITVRS-F QIVCVFKMAR RLPRAYGCWG
BACU005710/1-813 PMVSTCHCLQ AFFTLCFTVC ISCITVRS-F QIICIFKMAR RLPRTYGFW-
ENSTTRP00000010926/1-761 PMVSTCLCLQ AFLTLCFTVC ISCITVRS-F QII-IFKMAR RLPRAYGFWV
701 750
bmy_13309T0/1-628 RYHGPYVFVA FITVLKTVIV GSSILAVTTN PTAHTDPDDP KITTLSCNPS
ENSP00000364520/1-839 RYQGPYVSMA FITVLKMVIV VIGMLATGLS PTTRTDPDDP KITIVSCNPN
ENSBTAP00000038055/1-837 RYHGPYVFVA CVVMLKLVIV ASSVLATTTM PTTRVDPDDP RIMILSCNPN
BACU005710/1-813 -----YVFVA FITVLKTVIV GSSILA---N PTARTDPDDP KITTLSCDPS
ENSTTRP00000010926/1-761 RYHGLCVFVA FITVLKTVIV GSSILAVTTN STARTDPDDP KVTTLSCNPS
751 800
bmy_13309T0/1-628 YHRGLLINTS LDLLVSVLGF GFTYIGKELP TNYYEAKFIT FCMTFYFTSS
ENSP00000364520/1-839 YRNSLLFNTS LDLLLSVVGF SFAYMGKELP TNYNEAKFIT LSMTFYFTSS
ENSBTAP00000038055/1-837 YHRGLLVNTS LDLLLSLLGF GFAYTGKELP TNYNEAKFIT FCMTFYFSSS
BACU005710/1-813 YHRGLLINTS LDLLVSVLGF GFAYIGKELP TNYYEAKFIT FCMTFYFIS-
ENSTTRP00000010926/1-761 YHRGLRINSS L-LLVSVLGF GFAHIGKELP TNYYEAKFIT -CMTFYFTSS
801 850
bmy_13309T0/1-628 VFLCTFMSVY EGVLVTILDL LVTVLHLLGV TLGYFGPKCY MILFYLELNT
ENSP00000364520/1-839 VSLCTFMSAY SGVLVTIVDL LVTVLNLLAI SLGYFGPKCY MILFYPERNT
ENSBTAP00000038055/1-837 VFLCTFMAVY NGVLVTILDL LVTVLNLLGI SLGYFGPKCY MILFYPERNT
BACU005710/1-813 -----LPLRL HGALVTILDL LVTVLHLLGI TLGYFGPKCY MILFYLERNT
ENSTTRP00000010926/1-761 VFLCTFVSVY EGVLVTTLGL LVTVLYLLGI TLGYFGPKCY MILFYLERHT
851 900
bmy_13309T0/1-628 PAYFNSMIQG YTMGRD
ENSP00000364520/1-839 PAYFNSMIQG YTMRRD
ENSBTAP00000038055/1-837 PAYFNSVIQG YTMRKD
BACU005710/1-813 PAYFNSMIQG YTMGRD
ENSTTRP00000010926/1-761 PAYVNSMIQG YTMGRG