KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:19 2014 Check: 00 .. Name: bmy_13309T0/1-628 Len: 866 Check: 2473 Weight: 1.00 Name: ENSP00000364520/1-839 Len: 866 Check: 8801 Weight: 1.00 Name: ENSBTAP00000038055/1-837 Len: 866 Check: 8710 Weight: 1.00 Name: BACU005710/1-813 Len: 866 Check: 5025 Weight: 1.00 Name: ENSTTRP00000010926/1-761 Len: 866 Check: 56 Weight: 1.00 // 1 50 bmy_13309T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000364520/1-839 MGPRAKTISS LFFLLWVLAE PAENSDFYLP GDYLLGGLFS LHANMKGIVH ENSBTAP00000038055/1-837 MGPQGRAACS LLFLLQALAE PAENSEFFLP GDYLLGGLFT LHANVKGIVH BACU005710/1-813 MGAQGRVVCS LIFLLRALAE LAENSEFYLL GDYLLGGLFT LHANMKGIVH ENSTTRP00000010926/1-761 MGPRA-GVCS LSFLLIFLAE LTENSEFSLL EDYLLGGLFT LHANVKGTVH 51 100 bmy_13309T0/1-628 ---------- ---------- ---------- MKVLGYNLMQ ATRFAVEEIS ENSP00000364520/1-839 LNFLQVPMCK E--------- --------YE VKVIGYNLMQ AMRFAVEEIN ENSBTAP00000038055/1-837 LNYLKVPKCK E--------- --------YE MKVLGYNLMQ AMRFAVEEVN BACU005710/1-813 LKYLQVPKCK EGVSSARLEV MVWAGLSRYE MKVLGYNLTQ ATRFAVEEIN ENSTTRP00000010926/1-761 LNYLQVPKCN E--------- --------YE MKVLGYNLMQ AMRFAAEEIN 101 150 bmy_13309T0/1-628 NDSSLLPSVL LGYEMVDTCY MSNNVHPVLS FLSQDDYFPP IQEDYSHYVP ENSP00000364520/1-839 NDSSLLPGVL LGYEIVDVCY ISNNVQPVLY FLAHEDNLLP IQEDYSNYIS ENSBTAP00000038055/1-837 NDSSLLPNVL LGYEMVDSCY MSNNVQPVLY FLSQDDYFLP IQEDYSQYVP BACU005710/1-813 NDISLLPSVL LGYEMVDTCH MSNNVHPVLY FLSQDDYFPP IQEDYSHYVP ENSTTRP00000010926/1-761 NDSSLLPSVL LGYEMVDTCY MSNNIHPVLY FLSQDDYFLP IQEDYSHYIP 151 200 bmy_13309T0/1-628 RVVAIIGPEN SESPMTVAHF LSLSLLPQ-- ---------- ---------- ENSP00000364520/1-839 RVVAVIGPDN SESVMTVANF LSLFLLPQ-- -------ITY SAISDELRDK ENSBTAP00000038055/1-837 RVVAIIGPDN SESTKTVANF LSLFLLPQ-- -------ITY SAFNDELGNK BACU005710/1-813 RVVAITGPDN SESSMTVAHF LSLSLLPQYL LDPPLRRITY GAINDQ---- ENSTTRP00000010926/1-761 RVVAITGPDT SECPVTVAHF LSLFLLPQ-- -------ITY GTINDQ---- 201 250 bmy_13309T0/1-628 LHFPAVLHTA PGVHHQMEAM VQLMLHFRWN WILVLTSSDD YGRGNSQLLS ENSP00000364520/1-839 VRFPALLRTT PSADHHIEAM VQLMLHFRWN WIIVLVSSDT YGRDNGQLLG ENSBTAP00000038055/1-837 GRFPAVLRTV PGADHQTEAI VQMLLHFRWN WIVVLASGDD YGRENSHLLS BACU005710/1-813 LRFPAVLRTA PGVHHQMEAM VQLMLHFRWN GILVLPSSDD YGRGNSKLLS ENSTTRP00000010926/1-761 LHFPAVLRTA PGVHHQMEAM VPLMRHFRWN WILVLTSSDD YGRGSSQLLS 251 300 bmy_13309T0/1-628 ECLAHHDICI AFQETLPMPQ PNQTMMQQEP ECPEAIVGKL QQSMARAVAV ENSP00000364520/1-839 ERVARRDICI AFQETLPTLQ PNQNMTSEER QRLVTIVDKL QQSTARVVVV ENSBTAP00000038055/1-837 QRLAHGDICI AFQETLPTPQ PNQTMTPQDQ ERLEAIVGKL QQSTARVVVV BACU005710/1-813 ERLAHRDICI AFRETLPMPQ PDQTMTQQEP ERLEAVVGKL QQSTACAVAV ENSTTRP00000010926/1-761 ECLAHRDICI AFRETLPRPQ PDRTMTQQER ERLEAIMGKL QQSMARVVAV 301 350 bmy_13309T0/1-628 FSPDLALFDF FREVLRQNFT GAVWIASESW AIEPVLHHLT QLQRTGTFLG ENSP00000364520/1-839 FSPDLTLYHF FNEVLRQNFT GAVWIASESW AIDPVLHNLT ELRHLGTFLG ENSBTAP00000038055/1-837 FSPELALHNF FREVLRQNLT GAVWIASESW AIDPVLHNLT ELQRAGTFLG BACU005710/1-813 FSPDLALFDF FREVLRQNFT GAVWIASESW AIYPVLHHLT QLQRTGTFLG ENSTTRP00000010926/1-761 SSPDLALFNF FREVLRQNST GAVWVASEPW AIEPVLHHLT QLQRTGTFLG 351 400 bmy_13309T0/1-628 ITTQSVPIPG FSEFRARRS- ---------- ---------- ---------- ENSP00000364520/1-839 ITIQSVPIPG FSEFREWGPQ AGPPPLSRTS QSYTCNQECD NCLNATLSFN ENSBTAP00000038055/1-837 ITTQNVPIPG FSEFRVRRSQ VGRPALNRSS --ANCNQECD TCLNTTESFN BACU005710/1-813 TTTQSVPIPG FSEFLVRRSQ VSRPALNRSS LGAACNQECD SCMNTTESFN ENSTTRP00000010926/1-761 FTTQSVPIPG FSEFRVHRSQ VSRPALNRSS PGATCNQECD TCMDTSESFN 401 450 bmy_13309T0/1-628 ---------- ---------- ---------- ---------- ----QLLPEI ENSP00000364520/1-839 TILRLSGERV VYSVYSAVYA VAHALHSLLG CDKSTCTKRV VYPWQLLEEI ENSBTAP00000038055/1-837 SILTLSGERV VYSVYSSVYA VAHALHSLLG CNQSGCRRDV VYPWQLLLEI BACU005710/1-813 SILTLSGERV VYSVYSAVYA VAHAPQNLLG CNQTGCHKEV VYPWQLLLDI ENSTTRP00000010926/1-761 TILTLSGERV VYSVYSAVYA VAHALQSLLG CNQTGCHKEV VYPWQ----- 451 500 bmy_13309T0/1-628 WKVNFTLLGH QIFFNEQGDL SLYLEVIQWQ WDLSQNPFQS IASYQPSKRQ ENSP00000364520/1-839 WKVNFTLLDH QIFFDPQGDV ALHLEIVQWQ WDRSQNPFQS VASYYPLQRQ ENSBTAP00000038055/1-837 RKVNFTLLGH QIFFNEQGDL SLNLEIIQWQ WDLSQNPFRS VASYQPSKRQ BACU005710/1-813 WKVNFTLLGH QIFFNEQGDL SLHLEVIQWQ WH-------- ---------- ENSTTRP00000010926/1-761 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_13309T0/1-628 LKDICDISWH TPNNTIPVSM CSKDCQPGQK KKPAGIHPCC FECIDCLSGT ENSP00000364520/1-839 LKNIQDISWH TINNTIPMSM CSKRCQSGQK KKPVGIHVCC FECIDCLPGT ENSBTAP00000038055/1-837 LKHIHDISWN TPNNTIPVSM CSRSCQPGQK KKPVGLHPCC FECIDCLPGT BACU005710/1-813 ---------- -----IPVSM CSKDCQTGQK KKPAGIHPCC FECIACLSGT ENSTTRP00000010926/1-761 ---------- -----IAVSM CSKDCHPGQK KKPAGIDPGC FKYIDCLSGT 551 600 bmy_13309T0/1-628 FLNRAT---V SDAHGSLGWG ARVLPDA--- DAAADGIHGG PHV------- ENSP00000364520/1-839 FLNHTEDEYE CQACPNNEWS YQSETSCFKR QLVFLEWHEA PTIAVALLAA ENSBTAP00000038055/1-837 FLNQTLDEFD CQPCPSSEWS HRKDTSCFKR QLAFLEWDEA PTIVVVMLAS BACU005710/1-813 FLNRAAGEFD FQPCPSYEWS RRKDTSCFKW QLAFLEWHAA PTITVVVLAA ENSTTRP00000010926/1-761 FLNRAAGEFD CQPCPSYEWS RRKDTSCFKR QLAFLEWHEA PTITVVVLAA 601 650 bmy_13309T0/1-628 ---------- ---------- -CRAAHG--- ---------- -LHVPL---P ENSP00000364520/1-839 LGFLSTLAIL VIFWRHFQTP IVRSAGGPMC FLMLTLLLVA YMVVPVYVGP ENSBTAP00000038055/1-837 LGFLSTLAIV IIFWRHVRTP VVRSAGGPMC FLMLAPLLMA YTAVPVYVGP BACU005710/1-813 LGFLSTLAIL IIFWRQFQTP MVRSAGGPVC FLMLTPQLMA YMVVPVYVGP ENSTTRP00000010926/1-761 LGFLGTLAVS IIFWRQFQTP MVRSAGGPVC FLMLTPQLMA YMVVPVYVGP 651 700 bmy_13309T0/1-628 PGL-----LH ALLH-----C LHLLHHRALF PDHLHLQDGQ TPPTRLRLLV ENSP00000364520/1-839 PKVSTCLCRQ ALFPLCFTIC ISCIAVRS-F QIVCAFKMAS RFPRAYSYWV ENSBTAP00000038055/1-837 PTVWSCIFRQ AFFTLCFTIC ISCITVRS-F QIVCVFKMAR RLPRAYGCWG BACU005710/1-813 PMVSTCHCLQ AFFTLCFTVC ISCITVRS-F QIICIFKMAR RLPRTYGFW- ENSTTRP00000010926/1-761 PMVSTCLCLQ AFLTLCFTVC ISCITVRS-F QII-IFKMAR RLPRAYGFWV 701 750 bmy_13309T0/1-628 RYHGPYVFVA FITVLKTVIV GSSILAVTTN PTAHTDPDDP KITTLSCNPS ENSP00000364520/1-839 RYQGPYVSMA FITVLKMVIV VIGMLATGLS PTTRTDPDDP KITIVSCNPN ENSBTAP00000038055/1-837 RYHGPYVFVA CVVMLKLVIV ASSVLATTTM PTTRVDPDDP RIMILSCNPN BACU005710/1-813 -----YVFVA FITVLKTVIV GSSILA---N PTARTDPDDP KITTLSCDPS ENSTTRP00000010926/1-761 RYHGLCVFVA FITVLKTVIV GSSILAVTTN STARTDPDDP KVTTLSCNPS 751 800 bmy_13309T0/1-628 YHRGLLINTS LDLLVSVLGF GFTYIGKELP TNYYEAKFIT FCMTFYFTSS ENSP00000364520/1-839 YRNSLLFNTS LDLLLSVVGF SFAYMGKELP TNYNEAKFIT LSMTFYFTSS ENSBTAP00000038055/1-837 YHRGLLVNTS LDLLLSLLGF GFAYTGKELP TNYNEAKFIT FCMTFYFSSS BACU005710/1-813 YHRGLLINTS LDLLVSVLGF GFAYIGKELP TNYYEAKFIT FCMTFYFIS- ENSTTRP00000010926/1-761 YHRGLRINSS L-LLVSVLGF GFAHIGKELP TNYYEAKFIT -CMTFYFTSS 801 850 bmy_13309T0/1-628 VFLCTFMSVY EGVLVTILDL LVTVLHLLGV TLGYFGPKCY MILFYLELNT ENSP00000364520/1-839 VSLCTFMSAY SGVLVTIVDL LVTVLNLLAI SLGYFGPKCY MILFYPERNT ENSBTAP00000038055/1-837 VFLCTFMAVY NGVLVTILDL LVTVLNLLGI SLGYFGPKCY MILFYPERNT BACU005710/1-813 -----LPLRL HGALVTILDL LVTVLHLLGI TLGYFGPKCY MILFYLERNT ENSTTRP00000010926/1-761 VFLCTFVSVY EGVLVTTLGL LVTVLYLLGI TLGYFGPKCY MILFYLERHT 851 900 bmy_13309T0/1-628 PAYFNSMIQG YTMGRD ENSP00000364520/1-839 PAYFNSMIQG YTMRRD ENSBTAP00000038055/1-837 PAYFNSVIQG YTMRKD BACU005710/1-813 PAYFNSMIQG YTMGRD ENSTTRP00000010926/1-761 PAYVNSMIQG YTMGRG