KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:19 2014 Check: 00 .. Name: bmy_03170T0/1-695 Len: 986 Check: 5507 Weight: 1.00 Name: ENSTTRP00000010236/1-978 Len: 986 Check: 2679 Weight: 1.00 Name: ENSP00000258399/1-979 Len: 986 Check: 1202 Weight: 1.00 Name: BACU012704/1-799 Len: 986 Check: 4646 Weight: 1.00 Name: ENSBTAP00000038058/1-981 Len: 986 Check: 4077 Weight: 1.00 // 1 50 bmy_03170T0/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010236/1-978 MSPLKIHGPI RIRSMQTGIT KWKEGSFEVV EKENKVSLVV HYNTGGIPRI ENSP00000258399/1-979 MSPLKIHGPI RIRSMQTGIT KWKEGSFEIV EKENKVSLVV HYNTGGIPRI BACU012704/1-799 ---------- ---------- -MKE------ ---------- ---------- ENSBTAP00000038058/1-981 MSPLKIHGPI RIRSMQTGIT KWKEGSFEVV EKENKVSLVV HYNTGGIPRI 51 100 bmy_03170T0/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010236/1-978 FQLSHNIKNV VLRPSGAKQS RLMLTLQDNS FLSIDKVPSK DAEEMRLFLD ENSP00000258399/1-979 FQLSHNIKNV VLRPSGAKQS RLMLTLQDNS FLSIDKVPSK DAEEMRLFLD BACU012704/1-799 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038058/1-981 FQLSHNIKNV VLRPSGAKQS RLMLTLQDNS FLSIDKVPSK DAEEMRLFLD 101 150 bmy_03170T0/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010236/1-978 AVHQNRLNAG MKPSQ-SGSF GAILGSRTSQ KETNRQLSYS DNQXXXXXXX ENSP00000258399/1-979 AVHQNRLPAA MKPSQGSGSF GAILGSRTSQ KETSRQLSYS DNQASAKRGS BACU012704/1-799 ---------A MKPSQGSGSF GAILGSRTSQ KETNRQLSYS DNQVSSKRGS ENSBTAP00000038058/1-981 AVHQNRLNAA MKPSQGSGSF GAILGSRTSQ KETNRQLSYS DNQVSSKRGS 151 200 bmy_03170T0/1-695 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010236/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- -XXXXXXXXX XXXXXXXXXX ENSP00000258399/1-979 LETKDDIPFR KVLGNPGRGS IKTVAGSGI- -ARTIPSLTS TSTPLRSGLL BACU012704/1-799 LETKDDIPFR KVLGNPGRGS IKAAAGSGVT ATRTVPSLTS TSTPLRSGLL ENSBTAP00000038058/1-981 LETKDDTPFR KVLGNPSRGS IKAAAGNGVT PARTIPSLTS TSTPLRSGLL 201 250 bmy_03170T0/1-695 ---------- ---------- ---------- ---MTDPSRK YLTSSREKQL ENSTTRP00000010236/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN NKAMTDPSRK YLTSSREKQL ENSP00000258399/1-979 ENRTEKRKRM ISTGSELNED YPKENDSSSN NKAMTDPSRK YLTSSREKQL BACU012704/1-799 ENRTEKRKRM LSSGSELNED YPKENDSSSN NKAMTDPSRK YLTSSREKQL ENSBTAP00000038058/1-981 ENRTEKRKRM LSSGSELNED YPKENDSSSN NKAMTDPSRK YLTSSREKQL 251 300 bmy_03170T0/1-695 SLKPSEENRT SGLLPLQSSS FYGSRAASKD YSPGSTNLDR TNISSQTPSA ENSTTRP00000010236/1-978 SLKQSEENRT SGLLPLQSSS FYGSRAASKD YSPGSTNLDR TNITSQTPSA ENSP00000258399/1-979 SLKQSEENRT SGLLPLQSSS FYGSRAGSKE HSSGGTNLDR TNVSSQTPSA BACU012704/1-799 SLKQSEENRT SGLLPLQSSS FYGSRAASKD YSPGSTNLD- ---------- ENSBTAP00000038058/1-981 SLKQSEENRT SGLLPLQSSS FYGSRTAAKD YSPGSTNLDR TNISSQTPSA 301 350 bmy_03170T0/1-695 KRSLGFLPQP APLSVKKLRC NQDYTGWNKP RVPLSSHQQQ QLQGL----- ENSTTRP00000010236/1-978 KRSLGFLPQP APLSVKKLRC NQDYTGWNKP RVPLSSHQQQ QLQGFSNLGN ENSP00000258399/1-979 KRSLGFLPQP VPLSVKKLRC NQDYTGWNKP RVPLSSHQQQ QLQGFSNLGN BACU012704/1-799 ---------- ---------- ---------- ---------- ---SFSNLGN ENSBTAP00000038058/1-981 KRSLGFLPQP APLSVKKLRC NQDYTGWNKP RVPLSSHQQQ QLQGFSNLGN 351 400 bmy_03170T0/1-695 -CFHSN---- --HLQMTCSS KVSHGRKFHS THLSGALHTC LLKKISVIQR ENSTTRP00000010236/1-978 TCYMNAILQS LFSLQSFAND LLKQGIPWKK IPLN-----A LIRRFAHLLV ENSP00000258399/1-979 TCYMNAILQS LFSLQSFAND LLKQGIPWKK IPLN-----A LIRRFAHLLV BACU012704/1-799 TCYMNAILQS LFSLQSFAND LLKQGIPWKK IPLN-----A LIRRFAHLLV ENSBTAP00000038058/1-981 TCYMNAILQS LFSLQSFAND LLKQGIPWKK IPLN-----A LIRRFAHLLV 401 450 bmy_03170T0/1-695 RKKIYSRRLK MPFQLQQRDS L--------- ----DAHEFL SQCLDQLKED ENSTTRP00000010236/1-978 KKDICNSETK KDLLKKVKNA ISATAERFSG YMQNDAHEFL SQCLDQLKED ENSP00000258399/1-979 KKDICNSETK KDLLKKVKNA ISATAERFSG YMQNDAHEFL SQCLDQLKED BACU012704/1-799 KKDICNSETK KDLLKKVKNA ISATAERFSG YMQNDAHEFL SQCLDQLKED ENSBTAP00000038058/1-981 KKDICNSETK KDLLKKVKNA ISATAERFSG YMQNDAHEFL SQCLDQLKED 451 500 bmy_03170T0/1-695 MEKLNKTWKT EPVPGEENSP DISATRVYTC PVITNLEFEV QHSIICKACG ENSTTRP00000010236/1-978 MEKLNKTWKT EPVPGEENSP DISATRVYTC PVISNLEFEV QHSIICKACG ENSP00000258399/1-979 MEKLNKTWKT EPVSGEENSP DISATRAYTC PVITNLEFEV QHSIICKACG BACU012704/1-799 MEKLNKTWKT EPVPGEENSP DISATRVYTC PVITNLEFEV QHSIICKACG ENSBTAP00000038058/1-981 MEKLNKTWKI EPVPGEENSP DISATRVYTC PVITNLEFEV QHSIICKVCG 501 550 bmy_03170T0/1-695 EIIPKREQFN DLSIDLPRRK KPLPPRSVQD SLDLFFRAEE LEYSCEKCGG ENSTTRP00000010236/1-978 EIIPKREQFN DLSIDLPRRK KPLPPRSIQD SLDLFFRAEE LEYSCEKCGG ENSP00000258399/1-979 EIIPKREQFN DLSIDLPRRK KPLPPRSIQD SLDLFFRAEE LEYSCEKCGG BACU012704/1-799 EIIPKREQFN DLSIDLPRRK KPLPPRSVQD SLDLFFRAEE LEYSCEKCGG ENSBTAP00000038058/1-981 EIIPKREQFN DLSIDLPRRK KPLPPRSIQD SLDLFFRAEE LEYSCEKCGG 551 600 bmy_03170T0/1-695 KCALVRHKFN RLPRILILHL KRYSFNVALS LNNKIGQQVI IPRYLTLSSH ENSTTRP00000010236/1-978 KCALVRHKFN RLPRILILHL KRYSFNVALS LNNKIGQQVI IPRYLTLSSH ENSP00000258399/1-979 KCALVRHKFN RLPRVLILHL KRYSFNVALS LNNKIGQQVI IPRYLTLSSH BACU012704/1-799 KCALVRHKFN RLPRILILHL KRYSFNVALS LNNKIGQQVI IPRYLTLSSH ENSBTAP00000038058/1-981 KCALVRHKFN RLPRILILHL KRYSFNVALS LNNKIGQQVI IPRYLTLSSH 601 650 bmy_03170T0/1-695 CTENTKPPFN LGWSAQMAIS RPLKASQMVN SCITSPSTPS KNFTFKSKNS ENSTTRP00000010236/1-978 CTENTKPPFN LGWSAQMAIS RPLKASQMVN SCITSPSTPS KNFTFKSKNS ENSP00000258399/1-979 CTENTKPPFT LGWSAHMAIS RPLKASQMVN SCITSPSTPS KKFTFKSKSS BACU012704/1-799 CTENTKPPFN LGWSAQMAM- ---------- ---------- -NFTFKSKNS ENSBTAP00000038058/1-981 CTENTKPPFN LGWSAQMAVS RPLKASQMVN SCITSPSTPS KNFTFKSKTS 651 700 bmy_03170T0/1-695 LALCLDSDSE DELKRSVALS QRLCEMSGSE QQQEDLEKDS KSCRLERDKS ENSTTRP00000010236/1-978 LALCLDSDSE DELKRSVALS QRLCEMSGSE QQQEDLEKDS KSCRLEPGKS ENSP00000258399/1-979 LALCLDSDSE DELKRSVALS QRLCEMLGNE QQQEDLEKDS KLCPIEPDKS BACU012704/1-799 LALCLDSDSE DELKRSVALS QRLCEMSGSE QQQEDLEKDS KSCRLERDKS ENSBTAP00000038058/1-981 LALSLDSDSE DELKRSVALS HRLCEMSGSE QQQEDLEKDS KSCRIEPDKS 701 750 bmy_03170T0/1-695 ELENSGFDGM SEEELLAAVL EISKREASPS LSHEDDDKPT SSPDTGFAED ENSTTRP00000010236/1-978 ELENSGFDGM SEEELLAAVL EISKREASPP LSHEDDDKPT SSPDTGFAED ENSP00000258399/1-979 ELENSGFDRM SEEELLAAVL EISKRDASPS LSHEDDDKPT SSPDTGFAED BACU012704/1-799 ELENSGFDGM SEEELLAAVL EISKTEASPS LSHEDDDKPT SSPDTGFAED ENSBTAP00000038058/1-981 ELENSGFDGM SEEELLAAVL EISKREASPS LSHEDDDKPT SSPDTGFAED 751 800 bmy_03170T0/1-695 DIQEMPENPD PVETEKPKTV TEPDPASFTE ITKDCDENKE NKTPEGSQGE ENSTTRP00000010236/1-978 DIQEMSENPD PVETEKPKTV TEPDPASFTE ITKDCDENKE NKTPEGTQGE ENSP00000258399/1-979 DIQEMPENPD TMETEKPKTI TELDPASFTE ITKDCDENKE NKTPEGSQGE BACU012704/1-799 DIQEMPENPD PVETEKPKTV TEPDPASFTE ITKDCDENKE NKTPEGSQGE ENSBTAP00000038058/1-981 DIQEMPENPD SVETEKPKTI TEPDPASFTE ITKDCDENKE NKTPEGSQGE 801 850 bmy_03170T0/1-695 VDWLQQYDME REREEQELQQ ALAQSLQEQ- ---------- ---------- ENSTTRP00000010236/1-978 VDWLQQYDME REREEQELQQ ALAQSLQEQE AWEQKEDDDL KRATELSLQE ENSP00000258399/1-979 VDWLQQYDME REREEQELQQ ALAQSLQEQE AWEQKEDDDL KRATELSLQE BACU012704/1-799 VDWLQQYDME REREEQELQQ ALAQSLQEQE AWEQKEDDDL KRATELSLQE ENSBTAP00000038058/1-981 VDWLQQYDME REREEQELQQ ALAQSLQEQE AWEQKEDDDL KRATELSLQE 851 900 bmy_03170T0/1-695 FNNSFLDSLG SDEDSGNEDV LDMEYTEAEA EELKRNAEE- --------IF ENSTTRP00000010236/1-978 FNNSFLDSVG SDEDSGNEDV LDMEYTEAEA EELKRNAETG NLPHSYRLIS ENSP00000258399/1-979 FNNSFVDALG SDEDSGNEDV FDMEYTEAEA EELKRNAETG NLPHSYRLIS BACU012704/1-799 FNNSFLDSLG SDEDSGNEDV LDMEYTEAEA EELKRNAETG NLPHSYRLIS ENSBTAP00000038058/1-981 FNNSFVDSLG SDEDSGNEDV LDMEYTEAEA EELKRNAETG NLPHSYRLIS 901 950 bmy_03170T0/1-695 LIP-IGSSVL SVTLVALL-- LQKQAWFTYN DLEVSKIQEA SVQSDRDRSG ENSTTRP00000010236/1-978 VVSHIGSTSS SGHYISDVYD IKKQAWFTYN DLEVSKIQEA SVQSDRDRSG ENSP00000258399/1-979 VVSHIGSTSS SGHYISDVYD IKKQAWFTYN DLEVSKIQEA AVQSDRDRSG BACU012704/1-799 VVSHIGSTSS SGHYISDVYD IKKQAWFTYN DLEVSKIQEA SVQSDRDRSG ENSBTAP00000038058/1-981 VVSHIGSTSS SGHYISDVYD IKKQAWFTYN DLEVSKIQEA SVQSDRDRSG 951 1000 bmy_03170T0/1-695 YIFFYMHKEI FDELLETEKT SQALSMEVGK TTRQAS ENSTTRP00000010236/1-978 YIFFYMHKEI FDELLETEKT SQALSMEVGK TTRQAS ENSP00000258399/1-979 YIFFYMHKEI FDELLETEKN SQSLSTEVGK TTRQAL BACU012704/1-799 YIFFYMHKEI FDELLETEKT SQALSMEVGK TTRQAS ENSBTAP00000038058/1-981 YIFFYMHKEI FDELLETEKN SQALNLEVGK TTRQVS