KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:21 2014 Check: 00 .. Name: ENSP00000351273/1-538 Len: 546 Check: 3908 Weight: 1.00 Name: ENSBTAP00000038128/1-485 Len: 546 Check: 8024 Weight: 1.00 Name: ENSTTRP00000008268/1-491 Len: 546 Check: 4871 Weight: 1.00 Name: bmy_17602T0/1-404 Len: 546 Check: 9583 Weight: 1.00 Name: BACU014127/1-486 Len: 546 Check: 9617 Weight: 1.00 // 1 50 ENSP00000351273/1-538 MEGGRRARVV IESKRNFFLG AFPTPFPAEH VELGRLGDSE TAMVPGKGGA ENSBTAP00000038128/1-485 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008268/1-491 AGTGRKAWLV IESKRNFFRE AFPTPLLPER VKLGSLGGLV TVMLPG-AGN bmy_17602T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU014127/1-486 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000351273/1-538 DYILLPFKKM DFSRNLYDIG EQLDSEDLAS LKFLSLDYIP QRKQEPIKDA ENSBTAP00000038128/1-485 ---------M ALTQCLYNIG EQLGSDDLAA LKFLSRDHIP YRKQEPIKDA ENSTTRP00000008268/1-491 NYILLTLDQM NFNRCLYNIG EQLGSEDLAA LKFLSLDYIP HRKQEPIKDA bmy_17602T0/1-404 ---------M NFNRCLYNIG EQLDSEDLAA LKFLSLDYIP HRKQEPIKDA BACU014127/1-486 ---------M NFNRCLYNIG EQLASEDLAA LKFLSLDYIP HRKQEPIKDA 101 150 ENSP00000351273/1-538 LMLFQRLQEK RMLEESNLSF LKELLFRINR LDLLITYLNT RKEEMERELQ ENSBTAP00000038128/1-485 LMLFQRLQEK RMLEENNLSF LKELLFRVNR LDLLLNYLYT SEEEMKRELQ ENSTTRP00000008268/1-491 LVLFQRLQEK RMLEESNLSF LKELLFRMNR LDLL-TYLDT SVEEMERELQ bmy_17602T0/1-404 LVLFQRLQEK RMLEESNLSF LKELLFRMNR LDLLLTYLDT SEEEMERELQ BACU014127/1-486 LMLFQRLQEK RMLEESNLSF LKELLFRMNR LDLLLTYLDT SEEEMERELQ 151 200 ENSP00000351273/1-538 TPGRAQISAY RVMLYQISEE VSRSELRSFK FLLQEEISKC KLDDDMNLLD ENSBTAP00000038128/1-485 IPGRAQISAY RILLFQISED VNKVELKDFK FFLSQEIAKC KLDDDMTLLD ENSTTRP00000008268/1-491 MPGRAQISAY RVMLFQISED MTKQELKDFK FFLSQKIAKY KLDDDMTLLD bmy_17602T0/1-404 MPGRAQISAY RVMLFQISED VSKLELKDFK FFLSQEIAKC KLDDDMTLLD BACU014127/1-486 MPGRAQISAY RVMLFQISED VTKLELKDFK FFLSQEIAKC KLDDDMTLLD 201 250 ENSP00000351273/1-538 IFIEMEKRVI LGEGKLDILK RVCAQINKSL LKIINDYEEF SKERSSSLEG ENSBTAP00000038128/1-485 IFVEMEKRTI LGEENLDTLK RICEQVNKSL LKKIYDYEEL RKERRMSLER ENSTTRP00000008268/1-491 IFIEMEKRVM LGERYLDTLK RICEQINKSL LKKINDYEEL SREQGMSLGR bmy_17602T0/1-404 IFIEMEKRVI LGERNLDTLK RICEQINRSL LKKINDYEEL SREQRMSLER BACU014127/1-486 IFIEMEKRVI LGERNLDTLK RICEQINRSL LKKINDYEEL SREQRMSLER 251 300 ENSP00000351273/1-538 SPDEFSNG-- -----EELCG VMTISDSPRE QDSESQTLDK VYQMKSKPRG ENSBTAP00000038128/1-485 DPYAFSNDMS QSLPEEGYSK MPAMSDSP-E QDSELQTSDT VYRMTSKPRG ENSTTRP00000008268/1-491 GPDEFSNG-- -----GGSLE MLAMSDSPGE KDSESQTSNT VYRMKSKPRG bmy_17602T0/1-404 GPDEFSNDVS QLLIREGSLE MLAMSDSPGE KDSESQ---- ---------G BACU014127/1-486 GPDEFSNDVS QLLIREGSLE MLAMSDSPGE KDSESQTSNT VYRMKSKPRG 301 350 ENSP00000351273/1-538 YCLIINNHNF AKAREKVPKL HSIRDRNGTH LDAGALTTTF EELHFEIKPH ENSBTAP00000038128/1-485 YCLIFNNYDF SIARKQVPEL HDLKDRTGTD FDADALDKTF RELHFEIVHY ENSTTRP00000008268/1-491 YCLIFNNYDF SIARKDVPKL HSMKDRNGTN LDAEALRKTF SELHFEIVHY bmy_17602T0/1-404 WEIFAAS--- ---------- ---------- --GKALRKTF SELHFEIVHY BACU014127/1-486 YCLIFNNYDF SIARKDVPKL HSIKDRNGTD LDAEALRKTF SELHFEIVHY 351 400 ENSP00000351273/1-538 DDCTVEQIYE ILKIYQLMDH SNMDCFICCI LSHGDKGIIY GTDGQEAPIY ENSBTAP00000038128/1-485 KDLTAKGICE VLESYQKKDH KNKDCFICCI LTHGNKGIIY GSDGQEASIY ENSTTRP00000008268/1-491 KDYTAKKICE VLKSYQSMDH NNKDCFICCI LSHGDKGIIY GSDGQEAPIY bmy_17602T0/1-404 KDYTAKKICE VLKSYQSMDH NNKDCFICCI LSHGDKGIIY GSDGQEAPIY BACU014127/1-486 KDYTAKKICE VLKSYQSMDH NNKDCFICCI LSHGDKGIIY GSDGQEAPIY 401 450 ENSP00000351273/1-538 ELTSQFTGLK CPSLAGKPKV FFIQACQGDN YQKGIPVETD SEE-QPYLEM ENSBTAP00000038128/1-485 ELTSYFTGLK CPSLIGKPKI FFIQACQGDK YQKGVAVETD SEQMEAYLEV ENSTTRP00000008268/1-491 ELTSYFTGSK CPSLLGKPKI FFIQACQGYN YQRGIAVETD SEQKETYLEM bmy_17602T0/1-404 ELTSYFTGSK CPSLLGKPKI FFIQACQGDN YQRGIAVETD SEQQEAYLEM BACU014127/1-486 ELTSYFTGSK CPSLLGKPKI FFIQACQGDN YQRGIAVETD SEQKEAYLEM 451 500 ENSP00000351273/1-538 DLSSPQTRYI PDEADFLLGM ATVNNCVSYR NPAEGTWYIQ SLCQSLRERC ENSBTAP00000038128/1-485 D-SSPQKRYI PDEADFLLGM ATVKNYVSYR NIWNGAWYIQ SLCQNLRERC ENSTTRP00000008268/1-491 D-SSLQKRYI PDEADFLLGM ATVDNCVSYR SPMEGTWYIQ SLCQSLRERC bmy_17602T0/1-404 D-SSLQKRYI PDEADFLLGM ATVNNCVSYR STMEGTWYIQ SLCQSLRERC BACU014127/1-486 D-SSLQKRYI PDEADFLLGM ATVNNCVSYR STMEGTWYIQ SLCQSLRERC 501 550 ENSP00000351273/1-538 PRGDDILTIL TEVNYEVSNK DDKKNMGKQM PQPTFTLRKK LVFPSD ENSBTAP00000038128/1-485 PRGEDILTIL TKVNFEVSKL DDKQRMAKQM PQPTFTLRKK LFFPLN ENSTTRP00000008268/1-491 P--------- ---------- ---------- ---------- ------ bmy_17602T0/1-404 PR-------- ---------- ---------- ---------- ------ BACU014127/1-486 PRGEDILTIL TKVNFEVSNK DDKKNMGKQM PQPTFTLRKK LFFPLN