KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:22 2014 Check: 00 .. Name: ENSP00000080059/1-991 Len: 1108 Check: 4569 Weight: 1.00 Name: ENSBTAP00000038136/1-988 Len: 1108 Check: 2877 Weight: 1.00 Name: bmy_18803T0/1-959 Len: 1108 Check: 4201 Weight: 1.00 Name: BACU007960/1-1031 Len: 1108 Check: 368 Weight: 1.00 Name: ENSTTRP00000011934/1-983 Len: 1108 Check: 4598 Weight: 1.00 // 1 50 ENSP00000080059/1-991 ---------- ---------- ----MHSPGA DGTQVSPGAH YCSPTGAGCP ENSBTAP00000038136/1-988 ---------- ---------- --MLGNHLDP DGTQVSPAAP CSSPPIIGWP bmy_18803T0/1-959 RAGVGPPGPA GSLPGLALSP PPPPLPLPAA DGTQVSPGAH CPSPPGTGCP BACU007960/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011934/1-983 ---------- ---------- ----MHSPSA DGTQVSPGAH CPSPPGTGCP 51 100 ENSP00000080059/1-991 RPCADTPGPQ PQPMDLRVGQ RPPVEPPPEP TLLALQRPQR LHHHLFLAGL ENSBTAP00000038136/1-988 RPRADTPGPQ PQPMDLRVGQ RPPVEPPPEP TLLALQHPQR LHHHLFLAGL bmy_18803T0/1-959 RPCADTPGPQ PQPMDLRVGQ RPPVEPPPEP TLLALQHPQR LHHHLFLAGL BACU007960/1-1031 ---------- ---MDLRVGQ RPPVEPPPEP TLLALQHPQR LHHHLFLAGL ENSTTRP00000011934/1-983 RPCADTPGPQ PQPMDLRVGQ RPPVEPPPEP TLLALQHPQR LHHHLFLAGL 101 150 ENSP00000080059/1-991 QQQRSVEPMR LSMDTPMPEL QVGPQEQELR QLLHKDKSKR SAVASSVVKQ ENSBTAP00000038136/1-988 QPQRSAEPMR LSMDTPMPEL QMGQQEQELR QLLNKDKSKR SAVASSVVKQ bmy_18803T0/1-959 QTQRSAETMR LSMDTPLPEL QVGQQEQELR QLLNKDKSKR SAVASSVVKQ BACU007960/1-1031 QTQRSAETMR LSMDTPLPEL QVGQQEQELR QLLNKDKSKR SAVASSVVKQ ENSTTRP00000011934/1-983 QTQRSAETMR LSMDTPLPEL QVGQQEQELR QLLNKDKSKR SAVASSVVKQ 151 200 ENSP00000080059/1-991 KLAEVILKKQ QAALERTVHP NSPGIPYRTL EPLETEGATR SMLSSFLPPV ENSBTAP00000038136/1-988 KLAEVILKKQ QAALERTVHP NSPSVPYRTL EPLETEGAAR SMLSSFLPPV bmy_18803T0/1-959 KLAEVILKKQ QAALERTVHP NSPSVPYRTL EPLETEGAAR SMLSSFLPPV BACU007960/1-1031 KLAEVILKKQ QAALERTVHP NSPSVPYRTL EPLETEGAAR SMLSSFLPPV ENSTTRP00000011934/1-983 KLAEVILKKQ QAALERTVHP NSPSVPYRTL EPLETEGAAR SMLSSFLPPV 201 250 ENSP00000080059/1-991 PSLPSDPPEH FPLRKTVSEP NLKLRYKPKK SLERRKNPLL RKESAPPSLR ENSBTAP00000038136/1-988 PSLPCDPPEH FPLRKTVSEP NLKLRYKPKK SLERRKNPLL RKESAPPSLR bmy_18803T0/1-959 PGLPSDPPEH FPLRKTVSEP NLKLRYKPKK SLERRKNPLL RKESAPPSLR BACU007960/1-1031 PGLPSDPPEH FPLRKTVSEP NLKLRYKPKK SLERRKNPLL RKESAPPSLR ENSTTRP00000011934/1-983 PSLPSDPPEH FPLRKTVSEP NLKLRYKPKK SLERRKNPLL RKESAPPSLR 251 300 ENSP00000080059/1-991 RRPAETLGDS SPSSSSTPAS GCSSPNDSEH GPNPILGSEA LLGQRLRLQE ENSBTAP00000038136/1-988 RRPAETLGDS SPSSSSTPAS GCSSPNDSEH GPNPVLGSEA LLGQRLRLQE bmy_18803T0/1-959 RRPAETLGDS SPSSSSTPAS GCSSPNDSEH GPNPVLGSE- ---------- BACU007960/1-1031 RRPAETLGDS SPSSSSTPAS GCSSPNDSEH GPNPVLGSE- ----RLRLQE ENSTTRP00000011934/1-983 RRPAETLGDS SPSSSSTPAS GCSSPNDSEH GPNPVLGSEA LLGQRLRLQE 301 350 ENSP00000080059/1-991 TSVAPFALPT VSLLPAITLG LPAPARADSD RRTHPTLGPR GPILGSPHTP ENSBTAP00000038136/1-988 TSLAPFA--- --LLPTITLG LPAPARADGD RRTHATLGPR GPVLGNPHAH bmy_18803T0/1-959 ---------- ---------- ------ADGD RRTHATLGPR GPVLASPHAP BACU007960/1-1031 TSLAPFA--- --LLPTITLG LPAPARADGD RRTHATLGPR GPVLASPHAP ENSTTRP00000011934/1-983 TSLAPFA--- --LLPTITLG LPAPARADGD RRTHATLGPR GPVLASPHAP 351 400 ENSP00000080059/1-991 LFLPHGLEPE AGGTLPSRLQ PILLLDPSGS HAPLLTVPGL GPLPFHFAQS ENSBTAP00000038136/1-988 LFLPHGLEPE AGGPLPSRLQ PILLLDPSVT HTPLLTVPGL GPLPFHFAQS bmy_18803T0/1-959 LFLPHGLEPE AGGPLPSRLQ PILLLDPSVS HAPLLTVPGL GPLPFHFAQS BACU007960/1-1031 LFLPHGLEPE AGGALPSRLQ PILLLDPSVS HAPLLTVPGL GPLPFHFAQS ENSTTRP00000011934/1-983 LFLPHGLEPE AGGPLPSRLQ PILLLDPSVS HAPLLTVPGL GPLPFHFAQS 401 450 ENSP00000080059/1-991 LMTTERLSGS GLHWPLSRTR SEPLPPSATA PPPPGPMQPR LEQLKTHVQV ENSBTAP00000038136/1-988 LLTTERPSGS GLHRPLSRTR SEPLPPSATT PSLLGPLQPR LERLKPHVQL bmy_18803T0/1-959 LLTTERPSGS GLHRPLSRTR SEPLPPSATA PPLLGPLQPR LERLKPHVQL BACU007960/1-1031 LLTTERPSGS GLHRPLSRTR SEPLPPSATA PPLLGPLQPR LERLKPHIQL ENSTTRP00000011934/1-983 LLTTERPSGS GLHRPLSRTR SEPLPPSATA PPLLGPLQPR LERLKPHVQL 451 500 ENSP00000080059/1-991 IKRSAKPSEK PRLRQIPSAE DLETDGGGPG QVVDDGLEHR ELGHGQPEAR ENSBTAP00000038136/1-988 IKRSAKPSEK PRLRQIPSAE DLETDGGSVG PLRDDGLEHR ESSHGQQEAR bmy_18803T0/1-959 IKRPAKPSEK PRLRQIPSAE DLETDGGGVG PLGDDGLEHR ESSHGQHEAR BACU007960/1-1031 IKRPAKPSEK PRLRQIPSAE DLETDGGGVG PLGDDGLEHR ESSHGQHETR ENSTTRP00000011934/1-983 IKRPAKPSEK PRLQQIPSAE DLETDGGGVG PLGDDGLEHR ESSHGQHEAR 501 550 ENSP00000080059/1-991 GPAPLQQHPQ VLLWEQQRLA GRLPRGSTGD TVLLPLAQGG HRPLSRAQSS ENSBTAP00000038136/1-988 GTVPLQQHQQ VFLWEQQRLA GRLPRGATGD SVLLPLAPGS HRPLSRAQSS bmy_18803T0/1-959 GPIPLQQHQQ VYLWEQQRLA GRLPRGATGD SVLPPLAQGG HRPLSRAQSS BACU007960/1-1031 GPIPLQQHQQ VYLWEQQRLA GRLPRGATGD SVLPPLAQGG HRPLSRAQSS ENSTTRP00000011934/1-983 GPVPLQQHQQ VYLWEQQRLA GRLPRGATGD SVLPPLAQGG HRPLSRAQSS 551 600 ENSP00000080059/1-991 PAAPASLSAP EPASQARVLS SSETPARTLP FTTGLIYDSV MLKHQCSCGD ENSBTAP00000038136/1-988 PAAPASLSTP EPASQARILP SSETPARTLP FTTGLVYDSV MLKHQCSCGD bmy_18803T0/1-959 PAAPASLPTP EPTSQARVLP SSETPARTLP FTTGLVYDSV MLKHQCSCGD BACU007960/1-1031 PAAPASLPTP EPTSQARVLP SSETPARTLP FTTGLVYDSV MLKHQCSCGD ENSTTRP00000011934/1-983 PAAPASLPTP EPTSQARVLP SSETPARTLP FTTGLVYDSV MLKHQCSCGD 601 650 ENSP00000080059/1-991 NSRHPEHAGR IQSIWSRLQE RGLRSQCECL RGRKASLEEL QSVHSERHVL ENSBTAP00000038136/1-988 NSRHPEHAGR IQSIWSRLLE RGLRSQCESL RGRKASLEEL QSVHSERHVL bmy_18803T0/1-959 NSRHPEHAGR IQSIWSRLLE RGLRSQCESL RGRKASLEEL QSVHSERHVL BACU007960/1-1031 NSRHPEHAGR IQSIWSRLLE RGLRSQCESL RGRKASLEEL QSVHSERHVL ENSTTRP00000011934/1-983 NSRHPEHAGR IQSIWSRLLE RGLRSQCESL RGRKASLEEL QSVHSERHVL 651 700 ENSP00000080059/1-991 LYGTNPLSRL KLDNGKLAGL LAQRMFVMLP CGGVGVDTDT IWNELHSSNA ENSBTAP00000038136/1-988 LYGTNPLSRL KLDNGKLAGL LAQRMFVMLP CGGVGVDTDT IWNELHSSNA bmy_18803T0/1-959 LYGTNPLSRL KLDNGKLAGL LAQRMFVMLP CGGVGVDTDT IWNELHSSNA BACU007960/1-1031 LYGTNPLSRL KLDNGKLAGL LAQRMFVMLP CGGVGVDTDT IWNELHSSNA ENSTTRP00000011934/1-983 LYGTNPLSRL KLDXGR---L LAQRMFVMLP CGGVGVDTDT IWNELHSSNA 701 750 ENSP00000080059/1-991 ARWAAGSVTD LAFKVASREL KNGFAVVRPP GHHADHSTAM GFCFFNSVAI ENSBTAP00000038136/1-988 ARWAAGSVTD LAFKVASREL KNGFAVVRPP GHHADHSTAM GFCFFNSVAI bmy_18803T0/1-959 ARWAAGSVTD LAFKVASREL KNGFAVVRPP GHHADHSTAM GFCFFNSVAI BACU007960/1-1031 ARWAAGSVTD LAFKVASREL KNGFAVVRPP GHHADHSTAM GFCFFNSVAI ENSTTRP00000011934/1-983 ARWAAGSVTD LAFKVASREL KNGFAVVRPP GHHADHSTAM GFCFFNSVAI 751 800 ENSP00000080059/1-991 ACRQLQQQSK ASKILIVDWD VHHGNGTQQT FYQDPSVLYI SLHRHDDGNF ENSBTAP00000038136/1-988 ACRQLQQQGK ASKILIVDWD VHHGNGTQQT FYQDPNVLYI SLHRHDDGNF bmy_18803T0/1-959 ACRQLQQQGK ASKILIVDWD VHHGNGTQQT FYQDPSVLYI SLHRHDDGNF BACU007960/1-1031 ACRQLQQQGK ASKILIVDWD VHHGNGTQQT FYQDPSVLYI SLHRHDDGNF ENSTTRP00000011934/1-983 ACRQLQQQGK ASQILIVDWD VHHGNGTQQT FYQDPSVLYI SLHRHDDGNF 801 850 ENSP00000080059/1-991 FPGSGAVDEV GAGSGEGFNV NVAWAGGLDP PMGDPEYLAA FRIVVMPIAR ENSBTAP00000038136/1-988 FPGSGAVDEV GAGSGEGFNV NVAWAGGLDP PMGDPEYLAA FRIVVMPIAR bmy_18803T0/1-959 FPGSGAVDEV GAGSGEGFNV NVAWAGGLDP PMGDPEYLAA FRIVVMPIAR BACU007960/1-1031 FPGSGAVDEV GAGSGEGFNV NVAWAGGLDP PMGDPEYLAA FRIVVMPIAR ENSTTRP00000011934/1-983 FPGSGAVDEV GAGSGEGFNV NVAWAGGLDP PVGDPEYLAA FRIVVMPIAR 851 900 ENSP00000080059/1-991 EFSPDLVLVS AGFDAAEGHP APLGGYHVSA KC-------- -FGYMTQQLM ENSBTAP00000038136/1-988 EFSPDLVLVS AGFDAAEGHP PPLGGYHVSA KC-------- -FGYMTQQLM bmy_18803T0/1-959 EFSPDLVLVS AGFDAAEGHP PPLGGYHVSA KC-------- -FGYMTQQLM BACU007960/1-1031 EFSPDLVLVS AGFDAAEGHP PPLGGYHVSA KCKEGPTQGA GFGYMTQQLM ENSTTRP00000011934/1-983 EFSPDLVLVS AGFDAAEGHP PPLGGYHVSA KC-------- -FGYMTQQLM 901 950 ENSP00000080059/1-991 NLAGGAVVLA LEGGHDLTAI CDASEACVAA LLGNRVDPLS EEGWKQKPNL ENSBTAP00000038136/1-988 SLAGGAVVLA LEGGHDLTAI CDASEACVAA LLGNKVDPLS EEGWKQKPNL bmy_18803T0/1-959 SLAGGAVVLA LEGGHDLTAI CDASEACVAA LLGNKVDPLS EEGWKQKPNL BACU007960/1-1031 SLAGGAVVLA LEGGHDLTAI CDASEACVAA LLGNKVDPLS EEGWKQKPNL ENSTTRP00000011934/1-983 SLAGGAVVLA LEGGHDLTAI CDASEACVAA LLGNKVDPLS EEGWKQKPNL 951 1000 ENSP00000080059/1-991 NAIRSLEAVI RVHSKYWGCM QRLASCPD-- -SWVPRVPGA DKEEVEAVTA ENSBTAP00000038136/1-988 NAIRSLEAVI RVHSEYWGCM QRLASRPD-- -SWVHRVPGA DAEEVEAVTA bmy_18803T0/1-959 NAIRSLEAVI RVHSE---CG ERTPLTPDLG ETWGSAAPS- ---DQGPRSP BACU007960/1-1031 NAIRSLEAVI RVHSEYWGCM QRLASCPD-- -SWVPRVPGA DAEEVEAVTA ENSTTRP00000011934/1-983 NAIRSLEAVI RVHSEYWGCM QRLASCPD-- -SWVPRVPGA DA-EVEAVTA 1001 1050 ENSP00000080059/1-991 LASLSVGILA ED-------- ---------- ---------- ---------- ENSBTAP00000038136/1-988 LASLSVGILA EE-------- ---------- ---------- ---------- bmy_18803T0/1-959 NTSQARGAAA LE-------- ---------- ---------- ---------- BACU007960/1-1031 LASLSVGILT EEXXXXXXXX XXXXXXXXXX XXXXXGNARP LAHSPSTPSD ENSTTRP00000011934/1-983 LASLSVGILT EE-------- ---------- ---------- ---------- 1051 1100 ENSP00000080059/1-991 ---------- ---------- ---------- ---------- --RPSEQLVE ENSBTAP00000038136/1-988 ---------- ---------- ---------- ---------- --RTSGQLVE bmy_18803T0/1-959 ---------- ---------- ---------- ---------- ---------- BACU007960/1-1031 PPNLRTPGPS TATPAFSGFL GSWAQAFPAA PGSSAAPHFP SPRTSEQLVE ENSTTRP00000011934/1-983 ---------- ---------- ---------- ---------- --RTSEQLVE 1101 1150 ENSP00000080059/1-991 EEEPMNL- ENSBTAP00000038136/1-988 EEEPMNL- bmy_18803T0/1-959 -------- BACU007960/1-1031 EEEPMNL- ENSTTRP00000011934/1-983 EEEPMNLY