KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:48:34 2014 Check: 00 .. Name: bmy_10692T0/1-611 Len: 1195 Check: 746 Weight: 1.00 Name: ENSBTAP00000038204/1-1047 Len: 1195 Check: 4806 Weight: 1.00 Name: BACU010042/1-1039 Len: 1195 Check: 3450 Weight: 1.00 Name: ENSP00000288670/1-1092 Len: 1195 Check: 5427 Weight: 1.00 // 1 50 bmy_10692T0/1-611 MGNAGSMDSQ QTDFRAHNVP LKLPMPEPGE LEERFAIVLD VNEIIMIHNK ENSBTAP00000038204/1-1047 ---------- ---------- ---------- ---------- ---------- BACU010042/1-1039 -----MMKEK NTENKQ---- ---------- ---------- ---------- ENSP00000288670/1-1092 MGNAGSMDSQ QTDFRAHNVP LKLPMPEPGE LEERFAIV-- ---------- 51 100 bmy_10692T0/1-611 LDITCVMLYG LLNKLQLGIS CDKIKILAAR YGVYFECDPN ALGHLNFISY ENSBTAP00000038204/1-1047 ---------- ---------- ---------- ---------- ---------- BACU010042/1-1039 ---------- ---------- ---------- ---------- ---------- ENSP00000288670/1-1092 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_10692T0/1-611 GFPKEKLNAM NLPPDKARLL RQYDNEKKWE LICDQERFQV KNPPHTYIQK ENSBTAP00000038204/1-1047 ---------M NLPPDKARLL RQYDNEKKWE LICDQERFQV KNPPHTYIQK BACU010042/1-1039 -------NAM NLPPDKARLL RQYDNEKKWE LICDQERFQV KNPPHTYIQK ENSP00000288670/1-1092 ------LNAM NLPPDKARLL RQYDNEKKWE LICDQERFQV KNPPHTYIQK 151 200 bmy_10692T0/1-611 LRGYLDPAVT RKKFRRRVQE STQVLRELEI SLRTNHIGWV REFLNEENKG ENSBTAP00000038204/1-1047 LKGYLDPAVT RKKFRRRVQE STQVLRELEI SLRTNHIGWV REFLNEENKG BACU010042/1-1039 LKGYLDPAVT RKKFRRRVQE STQVLRELEI SLRTNHIGWV REFLNEENKG ENSP00000288670/1-1092 LKGYLDPAVT RKKFRRRVQE STQVLRELEI SLRTNHIGWV REFLNEENKG 201 250 bmy_10692T0/1-611 LDVLVEYLSF AQYAVTFDFE SVESTVESSV DKSKPWSRSI EDLHRGSNLP ENSBTAP00000038204/1-1047 LDVLVEYLSF AQYAVTFDFE SVESTVESSV DKSKPWSRSI EDLHRGSNLP BACU010042/1-1039 LDVLVEYLSF AQYAVTFDFE SVESTVESSV DKSKPWSRSI EDLHRGSNLP ENSP00000288670/1-1092 LDVLVEYLSF AQYAVTFDFE SVESTVESSV DKSKPWSRSI EDLHRGSNLP 251 300 bmy_10692T0/1-611 SPVGNSVSRS GRHPALRYNT LPSRRTLKNS RLVSKKDDVH VCIMCLRAIM ENSBTAP00000038204/1-1047 SPVGNSVSRS GRHSALRYNT LPSRRTLKNS RLVSKKDDVH VCIMCLRAIM BACU010042/1-1039 SPVGNSVSRS GRHPALRYNT LPSRRTLKNS RLVSKKDDVH VCIMCLRAIM ENSP00000288670/1-1092 SPVGNSVSRS GRHSALRYNT LPSRRTLKNS RLVSKKDDVH VCIMCLRAIM 301 350 bmy_10692T0/1-611 NYQYGFNMVM SHPHAVNEIA LSLNNKNPRE LAYLVVMLKH LLMKICGSEL ENSBTAP00000038204/1-1047 NYQYGFNMVM SHPHAVNEIA LSLNNKNPRT KALVLELLAA VCLVRGGHEI BACU010042/1-1039 NYQYGFNMVM SHPHAVNEIA LSLNNKNPRT KALVLELLAA VCLVRGGHEI ENSP00000288670/1-1092 NYQYGFNMVM SHPHAVNEIA LSLNNKNPRT KALVLELLAA VCLVRGGHEI 351 400 bmy_10692T0/1-611 R-------TR VCGEKQRFEK LMEHFRNEDN NIDFMVASMQ FINIVVHSVE ENSBTAP00000038204/1-1047 ILSAFDNFKE VCGEKQRFEK LMEHFRNEDN NIDFMVASMQ FINIVVHSVE BACU010042/1-1039 ILSAFDNFKE VCGEKQRFEK LMEHFRNEDN NIDFMVASMQ FINIVVHSVE ENSP00000288670/1-1092 ILSAFDNFKE VCGEKQRFEK LMEHFRNEDN NIDFMVASMQ FINIVVHSVE 401 450 bmy_10692T0/1-611 DMNFRVHLQY EFTKLGLDEY LDKLKHTESD KLQVQIQAYL DNVFDVGALL ENSBTAP00000038204/1-1047 DMNFRVHLQY EFTKLGLDEY LDKLKHTESD KLQVQIQAYL DNVFDVGALL BACU010042/1-1039 DMNFRVHLQY EFTKLGLDEY LDKLKHTESD KLQVQIQAYL DNVFDVGALL ENSP00000288670/1-1092 DMNFRVHLQY EFTKLGLDEY LDKLKHTESD KLQVQIQAYL DNVFDVGALL 451 500 bmy_10692T0/1-611 EDAETKNAAL ERVEELEENI SHLSEKLQDT ENEAMSKIVE LEKQLMQRNK ENSBTAP00000038204/1-1047 EDAETKNAAL ERVEELEENI SHLSEKLQDT ENEAMSKIVE LEKQLMQRNK BACU010042/1-1039 EDAETKNAAL ERVEELEENI SHLSEKLQDT ENEAMSKIVE LEKQLMQRNK ENSP00000288670/1-1092 EDAETKNAAL ERVEELEENI SHLSEKLQDT ENEAMSKIVE LEKQLMQRNK 501 550 bmy_10692T0/1-611 ELDVVREIYK DANTQVHTLR KMVKEKEEAI QRQSTLEKKI HELEKQGTIK ENSBTAP00000038204/1-1047 ELDVVREIYK DANTQVHTLR KMVKEKEEAI QRQSTLEKKI HELEKQGTIK BACU010042/1-1039 ELDVVREIYK DAKIQVHTLR KMVKEKEEAI QRQSTLEKKI HELEKQGTIK ENSP00000288670/1-1092 ELDVVREIYK DANTQVHTLR KMVKEKEEAI QRQSTLEKKI HELEKQGTIK 551 600 bmy_10692T0/1-611 IQKKGDGDIA ILPVVASGTL PTGSEVAVGD FVGPVTGAAA SGPLPPPPPP ENSBTAP00000038204/1-1047 IQKKGDGDIA ILPVVASGTL PTGSEVAVGN FVGPVMGAPS SGPLPPPPPP BACU010042/1-1039 IQKKGDGDIA ILPVVASGTL PTGSEVAVGD FVGPVTGAAA SGPLPPPPPP ENSP00000288670/1-1092 IQKKGDGDIA ILPVVASGTL SMGSEVVAGN SVGPTMGAAS SGPLPPPPPP 601 650 bmy_10692T0/1-611 LPLSSDAPE- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 LPLSSDAPEA VQNGPATPPV PPPPPPPPPP PPPPPPPPPP PLPGPAAETL BACU010042/1-1039 LPLSSDAPE- ---------- ---------- ---------- -----AAETV ENSP00000288670/1-1092 LPPSSDTPET VQNGPVTPPM PPPPPPPPPP PPPPPPPPPP PLPGPAAETV 651 700 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 PAPPLPPPPP PSAPPLPGTS SPTVVFNSGL A--------- ---------- BACU010042/1-1039 PAPPL-PPPP PSAPPLPGTS SPTVVFNSGL AASLPPVLEC HLQGLLSDCS ENSP00000288670/1-1092 PAPPL-APPL PSAPPLPGTS SPTVVFNSGL A--------- ---------- 701 750 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 ---------- -----AVKIK KPIKTKFRMP VFNWVALKPN QINGTVFNEI BACU010042/1-1039 RGFWWNLNFI LSDSVAVKIK KPIKTKFRMP VFNWVALKPN QINGTVFNEI ENSP00000288670/1-1092 ---------- -----AVKIK KPIKTKFRMP VFNWVALKPN QINGTVFNEI 751 800 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 DDERILEDLN VDEFEEIFKT KAQGPAIDLS SSKQKITQKG SNKVTLLEAN BACU010042/1-1039 DDERILEDLN VDEFEEIFKT KAQGPAIDLS SSKQKITQKG SNKVTLLEAN ENSP00000288670/1-1092 DDERILEDLN VDEFEEIFKT KAQGPAIDLS SSKQKIPQKG SNKVTLLEAN 801 850 bmy_10692T0/1-611 ---------- -AGK------ ---------- ---------- ---------- ENSBTAP00000038204/1-1047 RAKNLAITLR KAGKTAEEIC KAIHVFDLKT LPVDFVECLM RFLPTENEVK BACU010042/1-1039 RAKNLAITLR KAGKTADEIC KAIHVFDLKT LPVDFVECLM RFLPTENEVK ENSP00000288670/1-1092 RAKNLAITLR KAGKTADEIC KAIHVFDLKT LPVDFVECLM RFLPTENEVK 851 900 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 VLRLYERERK PLENLSDEDR FMMQFSKIER LMQKMTIMAF IGNFTESIQM BACU010042/1-1039 VLRLYERERK PLENLSDEDR FMMQFSKIER LMQKMTIMAF IGNFAESIQM ENSP00000288670/1-1092 VLRLYERERK PLENLSDEDR FMMQFSKIER LMQKMTIMAF IGNFAESIQM 901 950 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 LTPQLHSIIA ASVSIKSSQK LKKILEIILA LGNYMNSSKR GAVYGFKLQS BACU010042/1-1039 LTP------- ---------- ------IILA LGNYMNSSKR GAVYGFKLQS ENSP00000288670/1-1092 LTPQLHAIIA ASVSIKSSQK LKKILEIILA LGNYMNSSKR GAVYGFKLQS 951 1000 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 LDLLLDTKST DRKQTLLHYI SNVVKEKYQQ VSLFYNELHY VEKAAAVSLE BACU010042/1-1039 LDLLLDTKST DRKQTLLHYI SNVVKEKYHQ VSLFYNELHY VEKAASVSLE ENSP00000288670/1-1092 LDLLLDTKST DRKQTLLHYI SNVVKEKYHQ VSLFYNELHY VEKAAAVSLE 1001 1050 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 NVLLDVKELQ RGMDLTKREY TMHDHNTLLK EFIFNNEGKL KKLQDDAKIA BACU010042/1-1039 NVLLDVKELQ RGMDLTKREY TMHDHNTLLK EFILNNEGKL KKLQDDAKIA ENSP00000288670/1-1092 NVLLDVKELQ RGMDLTKREY TMHDHNTLLK EFILNNEGKL KKLQDDAKIA 1051 1100 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 QDAFDDVVKY FGENPKTTPP SVFFPVFVRF VKAYKQAEEE NELRKKQEQA BACU010042/1-1039 QDAFDDVVKY FGENPKTTPP SVFFPVFVRF VKAYKQAEEE NELRKKQEQA ENSP00000288670/1-1092 QDAFDDVVKY FGENPKTTPP SVFFPVFVRF VKAYKQAEEE NELRKKQEQA 1101 1150 bmy_10692T0/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038204/1-1047 LMEKLLEQEA LLEQQDPKSP SHKSKRQQQE LIAELRRRQV KDNRHVYEGK BACU010042/1-1039 LMEKLLEQEA LLEQQDPKSP SHKSKRQQQE LIAELRRRQV KDNRHVYEGK ENSP00000288670/1-1092 LMEKLLEQEA LMEQQDPKSP SHKSKRQQQE LIAELRRRQV KDNRHVYEGK 1151 1200 bmy_10692T0/1-611 ---------- ---KPWRES- ---------- ---------- ----- ENSBTAP00000038204/1-1047 DGAIEDIITA LKKNNITKFP NVHSRVRISS STPVVEDTQS ----- BACU010042/1-1039 DGAIEDIITD LRNQPYRRAD AVRRSVRRRF DDQNLRSVNG AEITM ENSP00000288670/1-1092 DGAIEDIITD LRNQPYRRAD AVRRSVRRRF DDQNLRSVNG AEITM