KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:37 2014 Check: 00 .. Name: ENSP00000369409/1-722 Len: 845 Check: 5027 Weight: 1.00 Name: ENSBTAP00000038287/1-728 Len: 845 Check: 3951 Weight: 1.00 Name: ENSTTRP00000002498/1-672 Len: 845 Check: 4393 Weight: 1.00 Name: bmy_05888T0/1-475 Len: 845 Check: 2724 Weight: 1.00 Name: BACU006295/1-780 Len: 845 Check: 6602 Weight: 1.00 // 1 50 ENSP00000369409/1-722 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038287/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002498/1-672 ---------- ---------- ---------- ---------- ---------- bmy_05888T0/1-475 MSAPQPAVPE LSPAEEAGGL AGKAMVGARE KGPRMGQRLP SIVVEPSEVG BACU006295/1-780 MSAPQPAVPE LSPAEEAGGL AGKAMVGARA KGPRMGQRLP SIVVEPSEAG 51 100 ENSP00000369409/1-722 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038287/1-728 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002498/1-672 ---------- ---------- ---------- ---------- ---------- bmy_05888T0/1-475 AVESGELRWP PEGTQRGSAQ SQAAAAPGTV GCGSGCAPEP TRSVPSPAPM BACU006295/1-780 AVESGELRWP PEGAQRGSAQ SQAAAGRQQR NPPRKVSGQR PLSDP-PSLQ 101 150 ENSP00000369409/1-722 ---------- -----MPSPQ TDTPGPELQS PKEAEEPQTP AQGSRRTSSR ENSBTAP00000038287/1-728 ---------- -----MPLPQ TEASGPEPHR PQEPAEPHTP AQGARRASSE ENSTTRP00000002498/1-672 ---------- -----MPSPQ TVASGPELHN PREPVVPQIP AQGTRKASSE bmy_05888T0/1-475 GGSGLAKPLS SAAAKMPSPQ TVASGPELHS PREPVAPQIP AQGTRRASSE BACU006295/1-780 SGSGTCAPGR SAAAKMPSPQ TVASGPELHS PREPVAPQIP AQGTRRASSE 151 200 ENSP00000369409/1-722 KEPNAHRKDG TRLGLGSLRQ AFSRASQRAL TQVSKEDTGL FRRSSCSLFR ENSBTAP00000038287/1-728 DAPGAGH-EG SRPGLGTLRR AFSRASQRAS VRAPRGDARL LRLSGRFLFG ENSTTRP00000002498/1-672 DASSAHR-EG LRPGLGTLRR AFSKASQWAS GCAPQEDPGL LRRSSRLLFR bmy_05888T0/1-475 DASSAHR-EG LRPGLGTFRR AFSKASQRAS GCAPQEDPGL LRRSSRFFFR BACU006295/1-780 DASSAHR-EG LRPGLGTFRR AFSKASQRAS GCAPQEDPGL LRRSSRFFFR 201 250 ENSP00000369409/1-722 SFRQALNDGP ATGHSQATP- -------EVP SGVMNGVSQQ ASTGAASEEL ENSBTAP00000038287/1-728 SLRRTPDNGP AGDQTGSTSE PGPACGRKGS SKAKEGVSRR SSTREGPAEA ENSTTRP00000002498/1-672 SLRRARDEGP AADQTQAAT- -------EAP SRAIDGVSPQ SSTGA-PAEL bmy_05888T0/1-475 SLRHALDDGP AADQTQATTG PGVAHGREVP SRAMDGVRRQ SSTGAGPAEL BACU006295/1-780 SLRHALDDGP AADQTQATTG PGVAHSREVP SKAMDGVCRQ SSTGAGPAEL 251 300 ENSP00000369409/1-722 KPEAEGKSVA DLITERQLLA AFEQLLRLET LLVAEKASRT FEQDPTAFAR ENSBTAP00000038287/1-728 EDLAKGTSVA DLISERQLLA AFEQLRHLET GLVAEKASCT FQQDPTGFAR ENSTTRP00000002498/1-672 E---KDKSVA DLITERKLLA AFEQLRHLET RLVAEKASRT FEQDPTGFAR bmy_05888T0/1-475 E--------- ---------- ---------- ---------- ---------- BACU006295/1-780 E---EDKSVA DLITERKLLA AFEQLRHLET RLVAEKASRT FEQDPTGFAR 301 350 ENSP00000369409/1-722 RAMDVCLLYD GLAAEIGAIV RETLDSDGVD AAALAELARV VSAEEEAHPS ENSBTAP00000038287/1-728 RAMDVCLHYD GLAAEIGAIV RETLGPDGVD AAALEELARV VRAEEEAHPE ENSTTRP00000002498/1-672 RAMDLCLHYD GLAAEIGAIV LETLGPDGVD AAVLAELARV VRAEEEAHPE bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 RAMDVCLHYD GLAAEIGAIV LETLGPNGVD AAVLAELARV ---------- 351 400 ENSP00000369409/1-722 PPDDGDFLRT PRRWRQHWEE AVRRSAQERV RRPGAGWAFG EAEGASGLAQ ENSBTAP00000038287/1-728 PPADGDFLRT PRRWRQYWED AVRRSAEERV RQAGAGEAPG AADAAPDLAR ENSTTRP00000002498/1-672 PRADGDFLCT PRHWRQHWED AVRRSARERV QQVSAGEAPG -----SGLAQ bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000369409/1-722 LLAELGGLVR RDLQKVRQEV QPAYAAAGFP AWEVYLRAFH SAVAQRLQEL ENSBTAP00000038287/1-728 LLAELGALVR RDLQKVQREV HPAYAAAGFP AWEAYLRAFH GAVARRLQEL ENSTTRP00000002498/1-672 LLDELGRLVR HDLQKVQLEV HPAYAAAGYP AWEAYRRAFH GAVAQRLQEL bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 LLAELGGLGR RDLQKVQLEV HPAYAAAGYP AWEAYLRAFH GRVAQRLQEL 451 500 ENSP00000369409/1-722 ARDARGCEQL YILLDWAANV YGSPDFLGAP GLALPAEPLP PLLAPDVWAR ENSBTAP00000038287/1-728 AHDARGCEQL YVLLDWVANV YSSPDFLGSQ DQALPSEPLP PLLAPEVWAR ENSTTRP00000002498/1-672 AHDTHGCEQL YILLDWASNV YSSPDFLGSQ DLALPSEPLP PLLAPDVWAR bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 AHDARGCEQL YVLLDWASNV YGSPDFLGSQ DLALPSEPLP PLLAPDVWAR 501 550 ENSP00000369409/1-722 LESDYTSFLE AKIASCFDSI LQLEQSHWAA AEVPEVLQGL YQAPLSMDVH ENSBTAP00000038287/1-728 LEDDYTSFLE TKISSCFDGI LQLEQSRWAA ADAPDVLQGL -HTSLSFDVC ENSTTRP00000002498/1-672 LESDYASFLE TKIASCFDGI LQEEQSRWVA AEAPDVLQGH YRTSLSVDVH bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 LESDYTSFLE TKIASCFDGI LQLEQSRWAA AEAPDVLQGH YHTPLSIDVH 551 600 ENSP00000369409/1-722 MLVAEHVKAA GAISAELEAT TLRICTRALG LFVPRFEKAF LASEAVSEPH ENSBTAP00000038287/1-728 MLVAEHVKAA GAISAELEAT TLGICARALG LFLQKYEKAF LESGAVSEPN ENSTTRP00000002498/1-672 MLVAQHVKAA GVISAELEAT TLQICTRALG LFLPRFEKAF LESGAVSEPS bmy_05888T0/1-475 ---------- ---------- ---------- ---------- ---------- BACU006295/1-780 MLVAEHVKAA GAISAELEAT TLQICARALG LFLPRFEKAF LESGAVSEPN 601 650 ENSP00000369409/1-722 LGAYINACEE LRTSLLSRFP GTQEELEKPL VTATCSFQKH LLQGLQRELQ ENSBTAP00000038287/1-728 LCASINACQE LRTHLLAKFP ESFGELEKAL GAAARAFQKQ LLQGLQGAVQ ENSTTRP00000002498/1-672 LCANINACEE FRTHLLR--P GSLEELEKPL VAA-CAFQKQ LLQGFQGDVQ bmy_05888T0/1-475 ---------- ---------- GSLDELEKPL VAATCAFQKR LLQGLQGDVQ BACU006295/1-780 LCANINACEE FRTHLLARFP GSLEELEKPL VAATCAFQKR LLQGLQGDLQ 651 700 ENSP00000369409/1-722 PLFRVVCTRD WLTQDWLHPL MDKVVTFAGH LQRVARPRAQ ETLQEVHRFV ENSBTAP00000038287/1-728 PLFRVLCTKA WLTQDLLQPL MDKVVAFSGL LEHMAPPLAQ ETLQEVHRYV ENSTTRP00000002498/1-672 PLFKVLCTKA WLTQDMLQPL LDKVVAFAGH LEHVVPPRAQ ETLQEVHRYV bmy_05888T0/1-475 PLFKVLCTKA WLTQDVLQPL LDKVVAFAGH LEHVVPPRAQ ETLQEVHRYV BACU006295/1-780 PLFKVLCTKA WLTQDVLQPL LDKVVAFAGH LEHVVPPRAQ ETLQEVHRYV 701 750 ENSP00000369409/1-722 VREYLARALR PRERFRGMER MHGSQKMSLD AQAISDTFQG LGSEATWLDQ ENSBTAP00000038287/1-728 VREYLEQALR PRERLRGADR RSGSQKMGLE AQAISSTFQG LGSEATWLGQ ENSTTRP00000002498/1-672 VREY------ ---------- ---------- ---------- -GSEATWLGR bmy_05888T0/1-475 VREYLAQALR PRERFRGVER VSGSQKMGLD AQAIGNTFQG LGSEATWLGR BACU006295/1-780 VREYLAQALR PRERFRGVER VSGSQKMGLD AQAIGNTFQG LGSEATWLGR 751 800 ENSP00000369409/1-722 AIQCVAEILG ETYKDDIQRH LETLIRSYPD IRRDHILAIL ALRRLGRQRN ENSBTAP00000038287/1-728 AIPCVADILG ETYKDDIGRH LETLIKSYPD IRRDHVLAIL ALRRLGRRRN ENSTTRP00000002498/1-672 AIPCVADILG ETYKDDIRRH LETLIRSYPD IRRDHVLAIL ALRRLGHRRN bmy_05888T0/1-475 AIPCVADILG ETYKDDIRRH LETLIGSYPD IRRDHVLAIL ALRRLGRHRN BACU006295/1-780 AIPCVADILG ETYKDDIRRH LETLIGSYPD IRRDHVLAIL ALRRLGRHRN 801 850 ENSP00000369409/1-722 QHLLQHTQDL LRAAAGAAGA EAPRGRVLFE EIKVPSAMAV LITCV ENSBTAP00000038287/1-728 QHFLRHAQAL LRAAAKAGGS GAAGGRVLFE EIELSTSIDV LVTCI ENSTTRP00000002498/1-672 QHLLTHAQDL LRAVAKAGGP GAAEGHVLFE EIEVPTSMDV LVTCI bmy_05888T0/1-475 QHLLTHAQDL LRATAKAGGP GAAGGHVLFE EIEVPPSMDV LITCI BACU006295/1-780 QHLLTHAQDL LRAVAKAGGP GTAGGHVLFE EIEVPPSMDV LITCI