KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:37 2014 Check: 00 .. Name: BACU017621/1-309 Len: 339 Check: 6451 Weight: 1.00 Name: bmy_00688T0/1-265 Len: 339 Check: 7195 Weight: 1.00 Name: ENSP00000368341/1-236 Len: 339 Check: 6986 Weight: 1.00 Name: ENSTTRP00000000367/1-237 Len: 339 Check: 6650 Weight: 1.00 Name: ENSBTAP00000038290/1-236 Len: 339 Check: 6359 Weight: 1.00 // 1 50 BACU017621/1-309 MHTTQKDTTY TKIFVGGLPY HTTDASLRKY FEVFGEIEEA VVITDRQTGK bmy_00688T0/1-265 MHTTQKDTTY TKIFVGGLPY HTTDASLRKY FEVFGEIEEA VVITDRQTGK ENSP00000368341/1-236 MHTTQKDTTY TKIFVGGLPY HTTDASLRKY FEVFGEIEEA VVITDRQTGK ENSTTRP00000000367/1-237 MHTTQKDTTY TKIFVGGLPY HTTDASLRKY FEVFGEIEEA VVITDRQTGK ENSBTAP00000038290/1-236 MHTTQKDTTY TKIFVGGLPY HTTDASLRKY FEVFGEIEEA VVITDRQTGK 51 100 BACU017621/1-309 SRGYGF---- ---------- ---VTMADRA AAERACKDPN PIIDGRKANV bmy_00688T0/1-265 SRGYGFVRVD LELCVYVCVY VAKVTMADRA AAERACKDPN PIIDGRKANV ENSP00000368341/1-236 SRGYGF---- ---------- ---VTMADRA AAERACKDPN PIIDGRKANV ENSTTRP00000000367/1-237 SRGYGF---- ---------- ---VTMADRA AAERACKDPN PIIDGRKANV ENSBTAP00000038290/1-236 SRGYGF---- ---------- ---VTMADRA AAERACKDPN PIIDGRKANV 101 150 BACU017621/1-309 NLAYLGAKPR IMQPG----- --FAFGVQQL HPALIQRP-- ---FGIPAHY bmy_00688T0/1-265 NLAYLGAKPR IMQPDESSYL TKYAASRTDT LELMINKTKQ NKNTRIPAHY ENSP00000368341/1-236 NLAYLGAKPR IMQPG----- --FAFGVQQL HPALIQRP-- ---FGIPAHY ENSTTRP00000000367/1-237 NLAYLGAKPR IMQPG----- --FAFGVQQL HPALIQRP-- ---FGIPAHY ENSBTAP00000038290/1-236 NLAYLGAKPR IMQPG----- --FAFGVQQL HPALIQRP-- ---FGIPAHY 151 200 BACU017621/1-309 VYPQAFVQPG VVIPHVQPTA AAASTAPYID YTGAAYAQYS -AAAAAAAAA bmy_00688T0/1-265 VYPQAFVQPG VVIPHVQPTA AAASTAPYID YTGAAYAQYS -AAAAAAAAA ENSP00000368341/1-236 VYPQAFVQPG VVIPHVQPTA AAASTTPYID YTGAAYAQYS -AAAAAAAAA ENSTTRP00000000367/1-237 VYPQAFVQPG VVIPHVQPTA AAASTAPYID YTGAAYAQYS AAAAAAAAAA ENSBTAP00000038290/1-236 VYPQAFVQPG VVIPHVQPTA AAASTAPYID YTGAAYAQYS -AAAAAAAAA 201 250 BACU017621/1-309 AAYDQYPDAA SPAAAGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00688T0/1-265 AAYDQYPYAA SPAAAGYVTA GGYGYAVQQP ITAAAPGTAA AAAAAAAAAA ENSP00000368341/1-236 AAYDQYPYAA SPAAAGYVTA GGYGYAVQQP ITAAAPGTAA AAAAAAAAAA ENSTTRP00000000367/1-237 AAYDQYPYAA SPAAAGYVTA GGYGYAVQQP ITAAAPGTAA AAAAAAAAAA ENSBTAP00000038290/1-236 AAYDQYPYAA SPAAAGYVTA GGYGYAVQQP ITAAAPGTAA AAAAAAAAAA 251 300 BACU017621/1-309 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00688T0/1-265 AFGQYQPQQL QTDRMQ---- ---------- ---------- ---------- ENSP00000368341/1-236 AFGQYQPQQL QTDRMQ---- ---------- ---------- ---------- ENSTTRP00000000367/1-237 AFGQYQPQQL QTDRMQ---- ---------- ---------- ---------- ENSBTAP00000038290/1-236 AFGQYQPQQL QTDRMQ---- ---------- ---------- ---------- 301 350 BACU017621/1-309 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI SQFSVANKS bmy_00688T0/1-265 ---------- ---------- ---------- --------- ENSP00000368341/1-236 ---------- ---------- ---------- --------- ENSTTRP00000000367/1-237 ---------- ---------- ---------- --------- ENSBTAP00000038290/1-236 ---------- ---------- ---------- ---------