KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:48:38 2014 Check: 00 ..
Name: ENSP00000412064/1-148 Len: 185 Check: 1934 Weight: 1.00
Name: ENSBTAP00000038327/1-141 Len: 185 Check: 4942 Weight: 1.00
Name: bmy_04686T0/1-156 Len: 185 Check: 4586 Weight: 1.00
Name: BACU007964/1-142 Len: 185 Check: 6801 Weight: 1.00
//
1 50
ENSP00000412064/1-148 ---------- ---------- ---------- -------MWN PNAGQPGPNP
ENSBTAP00000038327/1-141 ---------- ---------- ---------- -------MWN PNAGQPGPYP
bmy_04686T0/1-156 VEAERRSPRK QRCRGDGTSG FLSFLLFPFL GWRKYLNMWN PNAGQPGPYP
BACU007964/1-142 ---------- ---------- ---------- -------MWN PNAGQPGPYP
51 100
ENSP00000412064/1-148 YPPNIGCPGG SNPAHPPPIN PPFPPGPCPP PPGAPHGNPA FPPGGPPHPV
ENSBTAP00000038327/1-141 HPPNAGYPGG CNPAHPPPAN PPFPPGPFPT PPGAPQGNPA FPPGGPCHPV
bmy_04686T0/1-156 HPPNVGYPGG CNPAHPPPAT PTFPPGPFPT PPGAPQGNPA FPPGGPCHPV
BACU007964/1-142 HPPNIGCPGG CNPAHPPPAA PTFPPGPFPT PPGAPQGNPA FPPGGPCHPV
101 150
ENSP00000412064/1-148 PQPGYPGCQP LGPYPPPYPP PAPGIPPVNP LAPGMVGPAV IVDKKMQKKM
ENSBTAP00000038327/1-141 PQPGYPGCQP SGPYPPPYPP PGPGMCPVNP LVPGIVGPGI VIDKKVHKKM
bmy_04686T0/1-156 PQPGYPGCQP SGPYPPPYPP PAPGMCPVNP LAPGMVGPGM VIDKKMQKKM
BACU007964/1-142 PQPGYPGCQP SGPYPPPYPP PAPGMCPVTP WAPGMVGPGM VIDKKMQKKM
151 200
ENSP00000412064/1-148 KKAHKKMHKH QKHHKYHKHG KHSSSSSSSS SSDSD
ENSBTAP00000038327/1-141 KKAHKKKQKH ------HKHG KH-SSSSSSS SSDSD
bmy_04686T0/1-156 KKAHKK---- ---------- ---------- -----
BACU007964/1-142 KKAHKKKQKH ------HRHG KHSSSSSSSS SSDSD