KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:38 2014 Check: 00 .. Name: bmy_07765T0/1-437 Len: 643 Check: 4880 Weight: 1.00 Name: ENSP00000389903/1-373 Len: 643 Check: 297 Weight: 1.00 Name: ENSBTAP00000038354/1-360 Len: 643 Check: 7805 Weight: 1.00 Name: BACU008030/1-483 Len: 643 Check: 2659 Weight: 1.00 Name: ENSTTRP00000013113/1-359 Len: 643 Check: 4785 Weight: 1.00 // 1 50 bmy_07765T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSP00000389903/1-373 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038354/1-360 ---------- ---------- ---------- ---------- ---------- BACU008030/1-483 MRLHLDPAPR PSQPVPPFAA PLGAPHAPYW PRRQLPGQPS IRGARGKPGA ENSTTRP00000013113/1-359 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_07765T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSP00000389903/1-373 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038354/1-360 ---------- ---------- ---------- ---------- ---------- BACU008030/1-483 RVTSDLPCAP PYRLRNHLTV CPRARRSIPL EPAPRQPTPY TSRDWPTGPQ ENSTTRP00000013113/1-359 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_07765T0/1-437 ---------- ---------- ---------- ---------- ---------- ENSP00000389903/1-373 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038354/1-360 ---------- ---------- ---------- ---------- ---------- BACU008030/1-483 LHLPIGWVLR IPLGCRRARR ADGKFRGSAH PSARRTVYGY QSALRKGACV ENSTTRP00000013113/1-359 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_07765T0/1-437 ---------- ---------- -----MAVSR VCWARAALWG SAGPPGPYVA ENSP00000389903/1-373 ---------- ---------- -----MALSR VCWARSAVWG SAVTPGHFVT ENSBTAP00000038354/1-360 ---------- ---------- -----MALSR VCWARAALWG SAVPPGLYVV BACU008030/1-483 VKRTQRTGTL TRRRLTLVCP SLTAKMAVSR VCWARAALWG SAGPPGPYVA ENSTTRP00000013113/1-359 ---------- ---------- -----MAVSR MCWARAALWG SAGPPGPYVA 201 250 bmy_07765T0/1-437 RRLQFVRSGL AWGAPRSSKL HLSPKADVKS LISYVVTKTK VINGKYHRFL ENSP00000389903/1-373 RRLQLGRSGL AWGAPRSSKL HLSPKADVKN LMSYVVTKTK AINGKYHRFL ENSBTAP00000038354/1-360 RRLQFVRSGL TWGAPRSSKL HLSPKADVKS LISYVVTKTK VINGKYHRFL BACU008030/1-483 RRLQFVRSGL AWGAPRSSKL HLSPKADVKS LISYVVTKTK VINGKYHRFL ENSTTRP00000013113/1-359 RRLQFVRSGM A-GAPRSSKL HLSPKADVKS LISYVVTKTK VINGKYHRFL 251 300 bmy_07765T0/1-437 GRHFPRFYVL YTIFMKGLQM LWADAKKARR IKTNMWKHNI KFHQLSYREM ENSP00000389903/1-373 GRHFPRFYVL YTIFMKGLQM LWADAKKARR IKTNMWKHNI KFHQLPYREM ENSBTAP00000038354/1-360 GRHFPRFYVL YTIFMKGLQM LWADGKKARR IKTNMWKHNI KFHQLPYREM BACU008030/1-483 GRHFPRFYVL YTIFMKGLQM LWADAKKARR IRTNMWKHNI KFHQLSYREM ENSTTRP00000013113/1-359 GRHFPRFYVL YTIFMKGLQM LWADAKKARR IKTNMWKHNI KFHQLSYREM 301 350 bmy_07765T0/1-437 EHLRQ----- ---------- ---------L TLKDASFSK- ------YLFP ENSP00000389903/1-373 EHLRQVWARG RYPEVHGEFR QDVTKCLFLG IISIPPFANY LVFLLMYLFP ENSBTAP00000038354/1-360 EHLRQ----- --------FR RDVTKCLFLG ILSIPPFANY LVFLLMYLFP BACU008030/1-483 EHLRQ----- --------FR RDVTKCLFLG ILSIPPFANY LVFLLMYLFP ENSTTRP00000013113/1-359 EHLRQ----- --------FR RDVAKCLFLG ILSIPPFANY LVFLLMYLFP 351 400 bmy_07765T0/1-437 RQLLIQHFWT PKQQIDFLDI YHALRKQSHP EILCYLEKVI PLISDSGLRW ENSP00000389903/1-373 RQLLIRHFWT PKQQTDFLDI YHAFRKQSHP EIISYLEKVI PLISDAGLRW ENSBTAP00000038354/1-360 RQLLIRHFWT PKQQIDFLDI YHALRKQSHP EILCYLEKVV PLISDAGLQW BACU008030/1-483 RQLLIQHFWT PKQQIDFLDI YHALRKQSHP EILCYLEKVI PLISDSGLRW ENSTTRP00000013113/1-359 RQLLIQHFWT PKQQIDFLDI YHALRKQSHP EILCYLEKVI PLISDSGLRW 401 450 bmy_07765T0/1-437 HMTELCTKIQ RALKLGKKAS LDLPNIYPSL TSPKMQRGTH PAIHDILALR ENSP00000389903/1-373 RLTDLCT--- ---------- ---------- ---KIQRGTH PAIHDILALR ENSBTAP00000038354/1-360 HMTELCT--- ---------- ---------- ---KMQRGTH PAVHDILALR BACU008030/1-483 HMTELCT--- ---------- ---------- ---KMQRGTH PAIHDILALR ENSTTRP00000013113/1-359 HMTELCT--- ---------- ---------- ---KMQRGTH PAIHDILALR 451 500 bmy_07765T0/1-437 ECFSNHPLGM NQLHALQMVS TLRLSLFHGL TLLQVLLAVT PKSLESSNTS ENSP00000389903/1-373 ECFSNHPLGM NQLQALHVKA LSRAMLL--- ---------- ---------- ENSBTAP00000038354/1-360 ECFANHPLGM DQLRALQMKA LCRAMLL--- ---------- ---------- BACU008030/1-483 ECFSNHPLGM NQLHALQMKA LSRAMLL--- ---------- ---------- ENSTTRP00000013113/1-359 ECFSNRPLGM NQLHALQMKA LSRAMLL--- ---------- ---------- 501 550 bmy_07765T0/1-437 HTLSASCLVE IPFKDSYHCD SPTGQGFGKA GDWSADCPGG EVGKRLIAIP ENSP00000389903/1-373 ----TSYLPP PLLRHRLKTH TTVIHQLDKA ---------- ---------- ENSBTAP00000038354/1-360 ----TPYLPS VLLRHRLKTH TTVIHQLDKA ---------- ---------- BACU008030/1-483 ----TPYLPP VLLRYRLKTH TTVIHQLDKA ---------- ---------- ENSTTRP00000013113/1-359 ----TPYLPP VLLRYRLKTH TTVIHQLDKA ---------- ---------- 551 600 bmy_07765T0/1-437 TCSPWWAFEL TGLGASKELL VLLVTAEPRL FILSPHFYAC YLRGLNSTHI ENSP00000389903/1-373 ---------L AKLGIGQ--- --LTAQEVK- -------SAC YLRGLNSTHI ENSBTAP00000038354/1-360 ---------L AKLGVGQ--- --LTAQEVK- -------SAC YLRGLNSTHI BACU008030/1-483 ---------L AKLGIGQ--- --LTAQEVK- -------SVS A--------- ENSTTRP00000013113/1-359 ---------L AKLGIGQ--- --LTAQEVK- -------SAC YLRGLNSTHI 601 650 bmy_07765T0/1-437 AEERCRTWLG EWLQLSCSLK EAELSLLLHN VVLLSINYTG TRR ENSP00000389903/1-373 GEDRCRTWLG EWLQISCSLK EAELSLLLHN VVLLSTNYLG TRR ENSBTAP00000038354/1-360 AEERCRTWLG EWLQISCSLK ETELSLLLHN VVLLSINYVG SRR BACU008030/1-483 ---------- ---------- ---------- ---------- --- ENSTTRP00000013113/1-359 AEERCRTWLG EWLQLSCSLK EAELSLLLHN VVLLSINYIG TRR