KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:39 2014 Check: 00 .. Name: ENSTTRP00000001554/1-338 Len: 430 Check: 1622 Weight: 1.00 Name: ENSP00000338927/1-386 Len: 430 Check: 3596 Weight: 1.00 Name: BACU008101/1-379 Len: 430 Check: 2285 Weight: 1.00 Name: ENSBTAP00000038377/1-414 Len: 430 Check: 9512 Weight: 1.00 Name: bmy_04714T0/1-368 Len: 430 Check: 3701 Weight: 1.00 // 1 50 ENSTTRP00000001554/1-338 ---------- ---------- ---------- ---------- ---------- ENSP00000338927/1-386 ---------- ---------- --------MI LGSLSRAGPL PLLRQPPIMQ BACU008101/1-379 ---------- ---------- ---------- ---------- --------MQ ENSBTAP00000038377/1-414 AEPREGDAVR PRPLGGQGQA TAWGQRAPDT EGSLSRAGPL PLLRQPPIMQ bmy_04714T0/1-368 ---------- ---------- ---------- ---------- --------MQ 51 100 ENSTTRP00000001554/1-338 ---------- ---------- -------MDP VQKAVLSHTF GGPLLKTKRP ENSP00000338927/1-386 PPLDLKQILP FPLEPAPTLG LFSNYSTMDP VQKAVLSHTF GGPLLKTKRP BACU008101/1-379 PPLDLKQILP FPLEPAPTLG LFSNYSTMDP VQKAVLSHTF GGPLLKTKRP ENSBTAP00000038377/1-414 PPLDLKQILP FPLEPAPTLG LFSNYSAMDP VQKAVLSHTF GGPLLKTKRP bmy_04714T0/1-368 PPLDLKQILP FPLEPAPTLG LFSNYSTMDP VQKAVLSHTF GGPLLKTKRP 101 150 ENSTTRP00000001554/1-338 IISCNVCQIR FNSQSQAEAH YKGNRHARRV KGIEAAKTRG REPSVREAGD ENSP00000338927/1-386 VISCNICQIR FNSQSQAEAH YKGNRHARRV KGIEAAKTRG REPGVREPGD BACU008101/1-379 IISCNVCQIR FNSQSQAEAH YKGNRHARRV KGIEAAKTRG REPSVRETGD ENSBTAP00000038377/1-414 IISCNVCQIR FNSQSQAEAH YKGNRHARRV KGIEAAKTRG REPSVREPGD bmy_04714T0/1-368 IISCNVCQIR FNSQSQAEAH YKGNRHARRV KGIEAAKTRG REPSVRETGD 151 200 ENSTTRP00000001554/1-338 PAPPGGTPPS GEGVAPRP-- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000338927/1-386 PAPPGSTPTN GDGVAPRP-- VSMENGLGPA PGSPEKQPGS PSPPSIPETG BACU008101/1-379 PAPPGGTPPN GEGVAPRP-- VSMENGLGPA PGSPEKQPGS PSPPSVPEAG ENSBTAP00000038377/1-414 PAPPGSTPPN GDGVAPRP-- VSMENGVGPA PGSPKKQPGS PSPPSVPETG bmy_04714T0/1-368 PAPPGGTPPN GEGVAPRPVT VSMENGLGPA PGSPEKQPGS PSPPSVPETG 201 250 ENSTTRP00000001554/1-338 XXXXXXXXXX XXXXXXXXXX XXXXXXXXRL LYCALCKVAV NSLSQLEAHN ENSP00000338927/1-386 QGVTKGEGGT PAPASLPGGS KEEEEKAKRL LYCALCKVAV NSLSQLEAHN BACU008101/1-379 QGVTKGEGGT PAPASLPGGS KEEEEKAKRL LYCALCKVAV NSLSQLEAHN ENSBTAP00000038377/1-414 QGATKGEGGT PAPASLPGGS KEEEEKAKRL LYCALCKVAV NSLSQLEAHN bmy_04714T0/1-368 QGVTKGEGGT PAPASLPGGS KEEEEKAKRL LYCALCKVAV NSLSQLEAHN 251 300 ENSTTRP00000001554/1-338 KGTKHKTILE ARSGLGPIKA YPRLGPPTPG EPEAPAQDRT FHCEICNVKV ENSP00000338927/1-386 KGTKHKTILE ARSGLGPIKA YPRLGPPTPG EPEAPAQDRT FHCEICNVKV BACU008101/1-379 KGTKHKTILE ARSGLGPIKA YPRLGPPTPG EPEAPAQDRT FHCEICNVKV ENSBTAP00000038377/1-414 KGTKHKTILE ARSGLGPIKA YPRLGPPTPG EPEAPAQDRT FHCEICNVKV bmy_04714T0/1-368 KGTKHKTILE ARSGLGPIKA YPRLGPPTPG EPEAPAQDRT FHCEICNVKV 301 350 ENSTTRP00000001554/1-338 NSEVQLK--- -----QHISS RRHRDGVAGK PNPLVSRHKK PRGAGELAGT ENSP00000338927/1-386 NSEVQLK--- -----QHISS RRHRDGVAGK PNPLLSRHKK SRGAGELAGT BACU008101/1-379 NSEVQLKQPP THWSLQHISS RRHRDGVAGK PNPLLSRHKK PRGAGELAGT ENSBTAP00000038377/1-414 NSEVQLK--- -----QHISS RRHRDGVAGK PNPLLSRHKK PRGAGELAGT bmy_04714T0/1-368 NSEVQLK--- -----QHISS RRHRDGVAGK PNPLLSRHKK PRGAGELAGT 351 400 ENSTTRP00000001554/1-338 LTFSKELPKS LAGGLLPSPL AVAAVMAAAA GSPLSLRPAP AAPLLQGPPI ENSP00000338927/1-386 LTFSKELPKS LAGGLLPSPL AVAAVMAAAA GSPLSLRPAP AAPLLQGPPI BACU008101/1-379 LTFSKELPKS LAGGLLPSPL AVAAVMAAAA GSPLSLRPAP AAPLLQGPPI ENSBTAP00000038377/1-414 LTFSKELPKS LAGGLLPSPL AVAAVMAAAA GSPLSLRPAP AAPLLQGPPI bmy_04714T0/1-368 LTFSKELPKS LAGGLLPSPL AVAAVMAAAA GSPLSLRPAP AAPLLQGPPI 401 450 ENSTTRP00000001554/1-338 THPLLHPAPG PIRTKNGGPI LFSPY----- ENSP00000338927/1-386 THPLLHPAPG PIRTAH-GPI LFSPY----- BACU008101/1-379 THPLLHPAPR PIRTAP-NCA RTHPLLPLLT ENSBTAP00000038377/1-414 THPLLHPAPG PIRTAH-GPI LFSPY----- bmy_04714T0/1-368 THPLLHPAPG PIRTAH-GPI LFSPY-----