KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:40 2014 Check: 00 .. Name: ENSBTAP00000038398/1-961 Len: 1626 Check: 4977 Weight: 1.00 Name: BACU008184/1-1606 Len: 1626 Check: 8785 Weight: 1.00 Name: ENSP00000327821/1-962 Len: 1626 Check: 6986 Weight: 1.00 Name: bmy_20950T0/1-898 Len: 1626 Check: 306 Weight: 1.00 Name: ENSTTRP00000015935/1-962 Len: 1626 Check: 7510 Weight: 1.00 // 1 50 ENSBTAP00000038398/1-961 MDEQALLGLN PNADSDFRQR ALAYFEQLKI SPDAWQVCAE ALAQRTYSDD BACU008184/1-1606 MDEQALLGLN PNADSDFRQR ALAYFEQLKI SPDAWQVCAE ALAQRTYSDD ENSP00000327821/1-962 MDEQALLGLN PNADSDFRQR ALAYFEQLKI SPDAWQVCAE ALAQRTYSDD bmy_20950T0/1-898 MDEQALLGLN PNADSDFRQR ALAYFEQLKI SPDAWQVCAE ALAQRTYSDD ENSTTRP00000015935/1-962 MDEQALLGLN PNADTDFTQR ALAYFEQLKI SPDAWQVCAE ALAQRTYSDD 51 100 ENSBTAP00000038398/1-961 HIKFFCFQVL EHQVKYKYSE LTTVQQQLIR ETLVSWLQAQ MLNPQPEKTF BACU008184/1-1606 HIKFFCFQVL EHQVKYKYSE LTTVQQQLIR ETLISWLQAQ MLNPQPEKTF ENSP00000327821/1-962 HVKFFCFQVL EHQVKYKYSE LTTVQQQLIR ETLISWLQAQ MLNPQPEKTF bmy_20950T0/1-898 HIKFFCFQVL EHQVKYKYSE LTTVQQQLIR ETLISWLQAQ MLNPQPEKTF ENSTTRP00000015935/1-962 HIKFFCFQVL EHQVKYKYSE LTTVQQQLIR ETLISWLQAQ MLNPQPEKTF 101 150 ENSBTAP00000038398/1-961 IRNKAAQVFA LLFVTEYLTK WPKFFFDILS VVDLNPRGVD LYLRILMAID BACU008184/1-1606 IRNKAAQVFA LLFVTEYLTK WPKFFFDILS VVDLNPRGVD LYLRILMAID ENSP00000327821/1-962 IRNKAAQVFA LLFVTEYLTK WPKFFFDILS VVDLNPRGVD LYLRILMAID bmy_20950T0/1-898 IRNKAAQVFA LLFVTEYLTK WPKFFFDILS VVDLNPRGVD LYLRILMAID ENSTTRP00000015935/1-962 IRNKAAQVFA LLFVTEYLTK WPKFFFDILS VVDLNPRGVD LYLRILMAID 151 200 ENSBTAP00000038398/1-961 SELVDRDVVH TSEA------ --------KA RRNTLIKDTM REQCIPNLVE BACU008184/1-1606 SELVDRDV-- ---------- --------EA RRNTLIKDTM REQCIPNLVE ENSP00000327821/1-962 SELVDRDVVH TSE------- --------EA RRNTLIKDTM REQCIPNLVE bmy_20950T0/1-898 SELVDRDVVH TSEANKCGLY LLLLYSHREA RRNTLIKDTM REQCIPNLVE ENSTTRP00000015935/1-962 SELVDRDVVH TSE------- --------EA RRNTLIKDTM REQCIPNLVE 201 250 ENSBTAP00000038398/1-961 SWYQILQNYQ YTNSEVTCQC LEVVGAYVSW IDLSLIANDR FINMLLGHMS BACU008184/1-1606 SWYQILQNYQ YTNSEVTCQC LEVVGAYVSW IDLSLIANDR FINMLLGHMS ENSP00000327821/1-962 SWYQILQNYQ FTNSEVTCQC LEVVGAYVSW IDLSLIANDR FINMLLGHMS bmy_20950T0/1-898 SWYQILQNYQ YTNSEVTCQC LEVVGAYVSW IDLSLIANDR FINMLLGHMS ENSTTRP00000015935/1-962 SWYQILQNYQ YTNSEVTCQC LEVVGAYVSW IDLSLIANDR FINMLLGHMS 251 300 ENSBTAP00000038398/1-961 IEVLREEACD CLFEIVNKGM DPVDKMKLVE SLCQVLQSAG FFSIDREEDV BACU008184/1-1606 IEVLREEACD CLFEIVNKGM DPVDKMKLVE SLCQVLQSAG FFSIDQEEDV ENSP00000327821/1-962 IEVLREEACD CLFEVVNKGM DPVDKMKLVE SLCQVLQSAG FFSIDQEEDV bmy_20950T0/1-898 IEVLREEACD CLFEIVNKGM DPVDKMKLVE SLCQVLQSAG FFSID----- ENSTTRP00000015935/1-962 IEVLREEACD CLFEIVNKGM DPVDKMKLVE SLCRVLQSAG FFSIDQEEDV 301 350 ENSBTAP00000038398/1-961 DFLARFSKLV NGMGQSLIVS WTKLIKNGDI KNAQEALQAI ETKVALMLQL BACU008184/1-1606 DFLARFSKLV NGMGQSLIVS WTKLIKNGDI KNAQEALQAI ETKVALMLQL ENSP00000327821/1-962 DFLARFSKLV NGMGQSLIVS WSKLIKNGDI KNAQEALQAI ETKVALMLQL bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 DFLARFSKLV NGMGQSLIVS WTKLIKNGDI KNAQEALQAI ETKVALMLQL 351 400 ENSBTAP00000038398/1-961 LIHEDDDISS NIIGFCYDYL HILKQLTVLS DRQKANVETI MLAVMKKLTY BACU008184/1-1606 LIHEDDDISS NIIGFCYDYL HILKQLTVLS DQQKANVEAI MLAVMKKLTY ENSP00000327821/1-962 LIHEDDDISS NIIGFCYDYL HILKQLTVLS DQQKANVEAI MLAVMKKLTY bmy_20950T0/1-898 ---------- ---------- ----QLTVLA DQQKANVEAI MLAVMKKLTY ENSTTRP00000015935/1-962 LVHEDDDISS NIIGFCYDYL HILKQLTVLS DQQKANVEAI MLAVMKKLTY 401 450 ENSBTAP00000038398/1-961 DEEYNFENEG EDEAMFVEYR KQLKLLLDRL AQVSPELLLA SVRRVFSSTL BACU008184/1-1606 DEEYNFENEG EDEAMFVEYR KQLKLLLDRL AQVSPELLLA SVRRVFSSTL ENSP00000327821/1-962 DEEYNFENEG EDEAMFVEYR KQLKLLLDRL AQVSPELLLA SVRRVFSSTL bmy_20950T0/1-898 DEEYNFENEG EDEAMFVEYR KQLKLLLDRL AQVSPELLLA SVRRVFSSTL ENSTTRP00000015935/1-962 DEEYNFENEG EDEAMFVEYR KQLKLLLDRL AQVSPELLLA SVRRVFSSTL 451 500 ENSBTAP00000038398/1-961 QNWQTTRFME VEVAIRLLYM LAETTYSEPN FLFSYKLILL QGHFDV--AL BACU008184/1-1606 QNWQTTRFME VEVAIRLLYM LAEALPVSHG AHFSGDVSKA SALQDMMRTL ENSP00000327821/1-962 QNWQTTRFME VEVAIRLLYM LAEALPVSHG AHFSGDVSKA SALQDMMRTL bmy_20950T0/1-898 QNWQTTRFME VEVAIRLLYM LAEALPVSHG AHFSGDVSKA SALQDMMRTL ENSTTRP00000015935/1-962 QNWQTTRFME VEVAIRLLYM LAEALPVSHG AHFSGDVSKA SALQDMMRTL 501 550 ENSBTAP00000038398/1-961 VTSGVSSYQH TSVTLEFFET VVRYEKFFTV EPQHIPCVLM AFLDHRGLRH BACU008184/1-1606 VTSGVSSYQH TSVTLEFFET VVRYEKFFTV EPQHIPCVLM AFLDHRGLRH ENSP00000327821/1-962 VTSGVSSYQH TSVTLEFFET VVRYEKFFTV EPQHIPCVLM AFLDHRGLRH bmy_20950T0/1-898 VTSGVSSYQH TSVTLEFFET VVRYEKFFTV EPQHIPCVLM AFLDHRGLRH ENSTTRP00000015935/1-962 VTSGVSSYQH TSVTLEFFET VVRYEKFFTV EPQHIPCVLM AFLDHRGLRH 551 600 ENSBTAP00000038398/1-961 SSAKVRSRTA YLFSRFVKSL NKQMNPFIED ILNRIQDLLE LSPPENGYQS BACU008184/1-1606 SSAKVRSRTA YLFSRFVKSL NKQMNPFIED ILNRIQDLLE LSPPENGYQS ENSP00000327821/1-962 SSAKVRSRTA YLFSRFVKSL NKQMNPFIED ILNRIQDLLE LSPPENGHQS bmy_20950T0/1-898 SSAKVRSRTA YLFSRFVKSL NKQMNPFIED ILNRIQDLLE LSPPENGYQS ENSTTRP00000015935/1-962 SSAKVRSRTA YLFSRFVKSL NKQMNPFIED ILNRIQDLLE LSPPENGYQS 601 650 ENSBTAP00000038398/1-961 LLSSDDQLFI YETAGVLIVN SEYPAERKQA LMRNLLTPLM EKFKILLEKL BACU008184/1-1606 LLSSDDQLFI YETAGVLIVN SEYPAERKQA LMRNLLTPLM EKFKILLEKL ENSP00000327821/1-962 LLSSDDQLFI YETAGVLIVN SEYPAERKQA LMRNLLTPLM EKFKILLEKL bmy_20950T0/1-898 LLSSDDQLFI YETAGVLIVN SEYPAERKQA LMRNLLTPLM EKFKILLEKL ENSTTRP00000015935/1-962 LLSSDDQLFI YETAGVLIVN SEYPAERKQA LMRNLLTPLM EKFKILLEKL 651 700 ENSBTAP00000038398/1-961 MLAQDEERQA SLADCLNHAV GFASRTSKAF SNKQTVKQCG CSEVYLDCLQ BACU008184/1-1606 MLAQDEERQA SLADCLNHAV GFASRTSKAF SNKQTVKQCG CSEVYLDCLQ ENSP00000327821/1-962 MLAQDEERQA SLADCLNHAV GFASRTSKAF SNKQTVKQCG CSEVYLDCLQ bmy_20950T0/1-898 MLAQDEERQA SLADCLNHAV GFASRTSKAF SNKQTVKQCG CSEVYLDCLQ ENSTTRP00000015935/1-962 MLAQDEERQA SLADCLNHAV GFASRTSKAF SNKQTVKQCG CSEVYLDCLQ 701 750 ENSBTAP00000038398/1-961 TFLPALSCPL QKDILRSGVR TFLHRMIICL EEEVLPFIPS ASEHMLKDCE BACU008184/1-1606 TFLPALSCPL QKDILRSGVR TFLHRMIICL EEEVLPFIPS ASEHMLKDCE ENSP00000327821/1-962 TFLPALSCPL QKDILRSGVR TFLHRMIICL EEEVLPFIPS ASEHMLKDCE bmy_20950T0/1-898 TFLPALSCPL QKDILRSGVR TFLHRMIICL EEEVLPFIPS ASEHMLKDCE ENSTTRP00000015935/1-962 TFLPALSCPL QKDILRSGVR TFLHRMIICL EEEVLPFIPS ASEHMLKDCE 751 800 ENSBTAP00000038398/1-961 AKDLQEFIPL INQITAKFKI QVSPFLQQMF MPLLHAIFEV LLRPAEENDQ BACU008184/1-1606 AKDLQEFIPL INQITAKFKI QVSPFLQQMF MPLLHAIFEV LLRPAEENDQ ENSP00000327821/1-962 AKDLQEFIPL INQITAKFKI QVSPFLQQMF MPLLHAIFEV LLRPAEENDQ bmy_20950T0/1-898 AKDLQEFIPL INQITAKFKI QVSPFLQQMF MPLLHAIFEV LLRPAEENDQ ENSTTRP00000015935/1-962 AKDLQEFIPL INQITAKFKI QVSPFLQQMF MPLLHAIFEV LLRPAEENDQ 801 850 ENSBTAP00000038398/1-961 SAALEKQMLR RSYFAFLQTV TGSGMSEVIA NQGAENVERV LVTVIQGAVE BACU008184/1-1606 SAALEKQMLR RSYFAFLQTV TGSGMSEVIA NQGAENVERV LVTVIQGAVE ENSP00000327821/1-962 SAALEKQMLR RSYFAFLQTV TGSGMSEVIA NQGAENVERV LVTVIQGAVE bmy_20950T0/1-898 SAALEKQMLR RSYFAFLQTV TGSGMSEVIA NQGAENVERV LVTVIQGAVE ENSTTRP00000015935/1-962 SAALEKQMLR RSYFAFLQTV TGSGMSEVIA NQGAENVERV LVTVIQGAVE 851 900 ENSBTAP00000038398/1-961 YPDPIAQKTC FIILSKLVEL WGGKDGPVGF ADFVYKHIVP ACFLAPLKQT BACU008184/1-1606 YPDPIAQKTC FIILSKLVEL WGGKDGPVGF ADFVYKHIVP ACFLAPLKQT ENSP00000327821/1-962 YPDPIAQKTC FIILSKLVEL WGGKDGPVGF ADFVYKHIVP ACFLAPLKQT bmy_20950T0/1-898 YPDPIAQKTC FIILSKLVEL WGGKDGPVGF ADFVYKHIVP ACFLAPLKQT ENSTTRP00000015935/1-962 YPDPIAQKTC FIILSKLVEL WGGKDGPVGF ADFVYKHIVP ACFLAPLKQT 901 950 ENSBTAP00000038398/1-961 FDLADAQTVL ALSECAVTLK TIHLKRGPEC VQYLQQEYLP SLQVAPEIIQ BACU008184/1-1606 FDLADAQTVL ALSECAVTLK TIHLKRGPEC VQYLQQEYLP SLQVAPEIIQ ENSP00000327821/1-962 FDLADAQTVL ALSECAVTLK TIHLKRGPEC VQYLQQEYLP SLQVAPEIIQ bmy_20950T0/1-898 FDLADAQTVL ALSECAVTLK TIHLKRGPEC VQYLQQEYLP SLQVAPEIIQ ENSTTRP00000015935/1-962 FDLADAQTVL ALSECAVTLK TIHLKRGPEC VQYLQQEYLP SLQVAPEIIQ 951 1000 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 KTGDLFAIKV FNNISFLRPV DVQMREFEVL KKLNHKNIVK LFAIEEEVTT ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000038398/1-961 -------EFC QA------LQ QP-------- ---------- ---------- BACU008184/1-1606 RHKVLIMEFC PCGSLYTVLE EPCNAYGLPE SEFLIVLRDV VGGMNHLREN ENSP00000327821/1-962 -------EFC QA------LQ QP-------- ---------- ---------- bmy_20950T0/1-898 -------EFC QA------LQ QP-------- ---------- ---------- ENSTTRP00000015935/1-962 -------EFC QA------LQ QP-------- ---------- ---------- 1051 1100 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 GIVHRDIKPG NIMRVIGEDG QSVYKLTDFG AARELEDDEQ FVSLYGTEEY ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 LHPDMYERAV LRKDHQKKYG ATVDLWSIGV TFYHAATGSL PFRPFEGPRR ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 NKEVMYKIIT GKPSGAISGV QKAENGPIDW SGDMPVSCSL SRGLQVLLTP ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 VLANILEADQ EKCWGFDQFF AETSDILHRM IIHVFSLQQM TAHKVYIHSY ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 NTATVFHELV YKQTKIISSN QELIYEGRRL VLEPGRLAQH FPKTTEENPI ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 FVVSREPLST IGLIYEKISL PKVHPRYDLD GDASMAKAVT GVVCYACRIA ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- --------DA BACU008184/1-1606 STLLLYQELM RKGIRWLIEL VKDDYNETVH KKTEVVITLD FCIRNIEKTV ENSP00000327821/1-962 ---------- ---------- ---------- ---------- --------DA bmy_20950T0/1-898 ---------- ---------- ---------- ---------- --------DA ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- --------DA 1401 1450 ENSBTAP00000038398/1-961 KVFKNYLKV- ---------- ---------- ---------- ---------- BACU008184/1-1606 KVYEKLMKIN LEAAELGEIS DIHTKLLRLS SSQGTIETSL QDIESKLSPG ENSP00000327821/1-962 KVFKNYLKV- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 KVFKNYLKV- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 KVFKNYLKV- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 GLLADTWTHQ EGTHPKDRHV EKLQVLLNCI TEIYYQFKKD KAERRLAYNE ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000038398/1-961 ---------- -FFQRAKP-- ---------- ---------- ---------- BACU008184/1-1606 EQIHKFDKQK LYYHATKAMT HFTDECVKKY EAFLDKSEEW MRKMLHLRKQ ENSP00000327821/1-962 ---------- -FFQRAKP-- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- -FFQRAKP-- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- -FFQRAKP-- ---------- ---------- ---------- 1551 1600 ENSBTAP00000038398/1-961 ---------- ---------- ---------- ---------- ---------- BACU008184/1-1606 LLSLTNQCFD IEEEVSKYQD YTNELQETLP QKMFAASSGI KHTMTPIYPC ENSP00000327821/1-962 ---------- ---------- ---------- ---------- ---------- bmy_20950T0/1-898 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015935/1-962 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000038398/1-961 ---------- ---------- ------ BACU008184/1-1606 SNTLVEMTLG FGSLTMDGGL RNVDCL ENSP00000327821/1-962 ---------- ---------- ------ bmy_20950T0/1-898 ---------- ---------- ------ ENSTTRP00000015935/1-962 ---------- ---------- ------