KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:42 2014 Check: 00 .. Name: ENSTTRP00000015147/1-695 Len: 803 Check: 8959 Weight: 1.00 Name: BACU014064/1-786 Len: 803 Check: 894 Weight: 1.00 Name: bmy_16359T0/1-502 Len: 803 Check: 6697 Weight: 1.00 Name: ENSP00000415332/1-696 Len: 803 Check: 3688 Weight: 1.00 Name: ENSBTAP00000038429/1-413 Len: 803 Check: 7570 Weight: 1.00 // 1 50 ENSTTRP00000015147/1-695 MEASVILPIL KKKLAFLSGG KDRRSGLILT IPLCLEQTNM DELSVTLDYL BACU014064/1-786 ---------- ----FSLIGG KDRRSGLILT IPLCLEQTNM DELSVTLDYL bmy_16359T0/1-502 ---------- ---------- ---------- ---------- ---------M ENSP00000415332/1-696 MEASVILPIL KKKLAFLSGG KDRRSGLILT IPLCLEQTNM DELSVTLDYL ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015147/1-695 LSIPSEKCKA RGFTVIVDGR KSQWNVVKTV VLMLQNVVPA EVSLVCVVKP BACU014064/1-786 LSIPSEKCKA RGFTVIVDGR KSQWNVVKTV VLMLQNVVPA EVSLVCVVKP bmy_16359T0/1-502 YRRTSERSNG KGFL------ ---------- ---------- ---------- ENSP00000415332/1-696 LSIPSEKCKA RGFTVIVDGR KSQWNVVKTV VVMLQNVVPA EVSLVCVVKP ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015147/1-695 DEFWDKKVTH FCFWKEKDRL GFEVILVSAN KLTRYIEPCQ LTEDFGGSLT BACU014064/1-786 DEFWDKKVTH FCFWKEKDRL GFEVILVSAN KLTRYIEPCQ LTEDFGGSLT bmy_16359T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSP00000415332/1-696 DEFWDKKVTH FCFWKEKDRL GFEVILVSAN KLTRYIEPCQ LTEDFGGSLT ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015147/1-695 YDHMDWLNKR LVFEKFTKES TSLLDELALI NNGSDKGNQQ EKERSVDLNF BACU014064/1-786 YDHMDWLNKR LVFEKFTKES TSLLDELALI NNGSDKGNQQ EKERSVDLNF bmy_16359T0/1-502 ---------- --------ES TSLLDELALI NNGSDKGNQQ EKERSVDLNF ENSP00000415332/1-696 YDHMDWLNKR LVFEKFTKES TSLLDELALI NNGSDKGNQQ EKERSVDLNF ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015147/1-695 LPSVDPET-L QTGHELLSEL QQRRFNGSDG GVSWSPMDDE LLAQPQVMKL BACU014064/1-786 LPSVDPETVL QTGHELLSEL QQRRFNGSDG GVSWSPMDDE LLAQPQVMKL bmy_16359T0/1-502 LPSVDPETVL QTGHELLSEL QQCRFNGSDG GVSWSPMDDE LLAQPQVMKL ENSP00000415332/1-696 LPSVDPETVL QTGHELLSEL QQRRFNGSDG GVSWSPMDDE LLAQPQVMKL ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015147/1-695 LDSLREQYTR YQEVCRQRSK RTQLEEIQQK VMQVVNWLEG PGSEQLRAQW BACU014064/1-786 LDSLREQYTR YQEVCRQRSK RTQLEEIQQK VMQVVNWLEG PGSEQLRAQW bmy_16359T0/1-502 LDSLREQYTR YQEVCRQRSK RTQLEEIQQK VMQ------- ---------- ENSP00000415332/1-696 LDSLREQYTR YQEVCRQRSK RTQLEEIQQK VMQVVNWLEG PGSEQLRAQW ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---VVNWLEG PGSEQLRAQW 301 350 ENSTTRP00000015147/1-695 GIGDSIRASQ ALQQKHEEIE SQHSXXXXXX XXXXXXXXXX XXXXXXXXXX BACU014064/1-786 GIGDSIRASQ ALQQKHEEIE SQHSEWFAVY VELNQQIAAL LNAGDEEDLV bmy_16359T0/1-502 ---------- ---------- ----EWFAVY VELNQQIAAL LNAGDEEDLV ENSP00000415332/1-696 GIGDSIRASQ ALQQKHEEIE SQHSEWFAVY VELNQQIAAL LNAGDEEDLV ENSBTAP00000038429/1-413 GIGDSIRASQ ALQQKHEEIE SQHSEWFAVY VELNQQIAAL LNAGDEEDLV 351 400 ENSTTRP00000015147/1-695 XXXXXXXXXX XXXXXXXXXX XXXXXXLQAA LEFHGVAQDL SQQLDGLLGM BACU014064/1-786 ELKSLQQQLS DVCYRQASQL EFRQNLLQAA LEFHGVAQDL SQQLDGLLGM bmy_16359T0/1-502 ELKSLQQQLS DVCYRQASQL EFRQNLLQAA LEFHGVAQDL SQQLDGLLGM ENSP00000415332/1-696 ELKSLQQQLS DVCYRQASQL EFRQNLLQAA LEFHGVAQDL SQQLDGLLGM ENSBTAP00000038429/1-413 ELKSLQQQLS DVCYRQASQL EFRQNLLQAA LEFHGVAQDL SQQLDGLLGM 401 450 ENSTTRP00000015147/1-695 LCVDVAPADG ASIQQTLKLL EEKLKSVDVG LQGLREKGQG LLDQISNQAS BACU014064/1-786 LCVDVAPADG ASIQQTLKLL EEKLKSVDVG LQGLREKGQG LLDQISNQAS bmy_16359T0/1-502 LCVDVAPADG ASIQQTLKLL EEKLKSVDVG LQGLREKGQG LLDQISNQAS ENSP00000415332/1-696 LCVDVAPADG ASIQQTLKLL EEKLKSVDVG LQGLREKGQG LLDQISNQAS ENSBTAP00000038429/1-413 LCVDVAPADG ASIQQTLKLL EEKLKSVDVG LQGLREKGQG LLDQISNQAS 451 500 ENSTTRP00000015147/1-695 WAYGKDVTIE NKENVDHIQG VMEDMQLRKQ R--------- --CEDMVDVR BACU014064/1-786 WAYGKDVTIE NKENVDHIQG VMEDMQLRKQ RQIMTLTQTP LLCEDMVDVR bmy_16359T0/1-502 WAYGKDVTSE NKENVDHIQG VMEDMQLRKQ R--------- --CEDMVDVR ENSP00000415332/1-696 WAYGKDVTIE NKENVDHIQG VMEDMQLRKQ R--------- --CEDMVDVR ENSBTAP00000038429/1-413 WAYGKDVTIE NKENVDHIQG VMEDMQLRKQ R--------- --CEDMVDVR 501 550 ENSTTRP00000015147/1-695 RLKMLQMVQL FKCEEDAAQA VEWLSELLDA LLKTHIRLGD DAQETKVLLE BACU014064/1-786 RLKMLQMVQL FKCEEDAAQA VEWLSELLDA LLKTHIRLGD DAQETKVLLE bmy_16359T0/1-502 RLKMLQMVQL FKCEEDAAQA VEWLSELLDA LLKTHIRLGD DAQETKVLLE ENSP00000415332/1-696 RLKMLQMVQL FKCEEDAAQA VEWLSELLDA LLKTHIRLGD DAQETKVLLE ENSBTAP00000038429/1-413 RLKMLQMVQL FKCEEDAAQA VEWLSELLDA LLKTHTRLGD DAQETKVLLE 551 600 ENSTTRP00000015147/1-695 KHRKFVDVAQ STYDYGRQLL QATVVLCQSL RCTSRSSGDT LPRLNRVWKQ BACU014064/1-786 KHRKFVDVAQ STYDYGRQLL QATVVLCQSL RCTSRSSGDT LPRLNRVWKQ bmy_16359T0/1-502 KHRKFVDVAQ STYDYGRQLL QATVVLCQSL RCTSXSSGDT LPRLNRVWKQ ENSP00000415332/1-696 KHRKFVDVAQ STYDYGRQLL QATVVLCQSL RCTSRSSGDT LPRLNRVWKQ ENSBTAP00000038429/1-413 KHRKFVDVAQ STYDYGRQLL QATVVLCQSL RCTSRSSGDT LPRLNRVWKQ 601 650 ENSTTRP00000015147/1-695 FTIASEERVH RLEMAIAFHS NAEKILQDCP EEPEAINDEE QFDEIEAVGK BACU014064/1-786 FTIASEERVH RLEMAIAFHS NAEKILQDCP EEPEAINDEE QFDEIEAVGK bmy_16359T0/1-502 FTIASEERVH RLEMAISFHS NAEKILQDCP EEPEAINDEE QFXEIEAVGK ENSP00000415332/1-696 FTIASEERVH RLEMAIAFHS NAEKILQDCP EEPEAINDEE QFDEIEAVGK ENSBTAP00000038429/1-413 FTVASEERVH RLEMAIAFHS NAEKILQDCP EEPEAINDEE QFDEVEAVGK 651 700 ENSTTRP00000015147/1-695 SLLDRLTVPV VYPDGTEQYF GSPSD----- ---------- ---------- BACU014064/1-786 SLLDRLTVPV VYPDGM---I GQPDGGQMRS IIYFEVDRTR HSSINKQESL bmy_16359T0/1-502 SLLDRLTVPV VYPDGTEQYF GSPSD----- ---------- ---------- ENSP00000415332/1-696 SLLDRLTVPV VYPDGTEQYF GSPSD----- ---------- ---------- ENSBTAP00000038429/1-413 SLLDRLTVPV VYPDGTEQYF GSPSD----- ---------- ---------- 701 750 ENSTTRP00000015147/1-695 MASTAEHIRD RMKLVS---L KRQQLRHPEM MTTES----- ---------- BACU014064/1-786 LTAMKEKIKE TVQIHNSYVL KPNQSVDANV KSTCDLWVAD DTAKSPSCLV bmy_16359T0/1-502 MASTAEHIRD RMKLVS---L KRQQLRHPEM MTTES----- ---------- ENSP00000415332/1-696 MASTAENIRD RMKLVN---L KRQQLRHPEM VTTES----- ---------- ENSBTAP00000038429/1-413 MASTAEHIRD RMKLVS---L KRQQLRHPEM MTTES----- ---------- 751 800 ENSTTRP00000015147/1-695 ---------- ---------- ---------- ---------- ---------- BACU014064/1-786 QVLVTSLSFR TFSTIIAFQV GSTTGVSDVL TKMKITIARD FCMNAGVRRS bmy_16359T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSP00000415332/1-696 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038429/1-413 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000015147/1-695 --- BACU014064/1-786 YLD bmy_16359T0/1-502 --- ENSP00000415332/1-696 --- ENSBTAP00000038429/1-413 ---