KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:42 2014 Check: 00 .. Name: ENSTTRP00000016236/1-705 Len: 743 Check: 8626 Weight: 1.00 Name: ENSP00000216832/1-717 Len: 743 Check: 4164 Weight: 1.00 Name: ENSBTAP00000038454/1-722 Len: 743 Check: 7872 Weight: 1.00 Name: bmy_18135T0/1-732 Len: 743 Check: 2602 Weight: 1.00 Name: BACU007384/1-716 Len: 743 Check: 7639 Weight: 1.00 // 1 50 ENSTTRP00000016236/1-705 MAVAVRTLQE QLEKAKESLK NVDENIRKLT GRDPNDVRPI QARLLALSGP ENSP00000216832/1-717 MAVAVRTLQE QLEKAKESLK NVDENIRKLT GRDPNDVRPI QARLLALSGP ENSBTAP00000038454/1-722 MAVAVRTLQE QLEKAKESLK NVDENIRKLT GRDPNDVRPI QARLLALSGP bmy_18135T0/1-732 MAVAVRTLQE QLEKAKESLK NVDENIRKLT GRDPNDVRPI QARLLALSGP BACU007384/1-716 MAVAVRTLQE QLEKAKESLK NVDENIRKLT GRDPNDV--- ---------- 51 100 ENSTTRP00000016236/1-705 GGGRGRGSLL LRRGFSDIGG GPPAKQRDLE GAVSRLGGER RTRRESRQES ENSP00000216832/1-717 GGGRGRGSLL LRRGFSDSGG GPPAKQRDLE GAVSRLGGER RTRRESRQES ENSBTAP00000038454/1-722 GGGRGRGSLL LRRGFSDSGG GPPAKQRDLE GAVSRLGGER RTRRESRQES bmy_18135T0/1-732 GGGRGRGSLL LRRGFSDSGG GPPAKQRDLE GAVSRLGGER RTRRESRQES BACU007384/1-716 ---------- -RRGFSDSGG GPPAKQRDLE GAVSRLGGER RTRRESRQES 101 150 ENSTTRP00000016236/1-705 DPEDDDVKKP ALQSSVVATS KERTRRDLIQ DQNMDEKGKQ -RNRRIFGLL ENSP00000216832/1-717 DPEDDDVKKP ALQSSVVATS KERTRRDLIQ DQNMDEKGKQ -RNRRIFGLL ENSBTAP00000038454/1-722 DPEDDDVKKP ALQSSVVATS KERTRRDLIQ DQNMDEKGKQ SRNRRIFGLL bmy_18135T0/1-732 DPEDDDVKKP ALQSSVVATS KERTRRDLIQ DQNMDEKGKQ -RNRRIFGLL BACU007384/1-716 DPEDDDVKKP ALQSSVVATS KERTRRDLIQ DQNMDEKGKQ -RNRRIFGLL 151 200 ENSTTRP00000016236/1-705 MGTLQKFKQE STVATERQKR RQEIEQKLEV QAEEERKQVE NERRELFEER ENSP00000216832/1-717 MGTLQKFKQE STVATERQKR RQEIEQKLEV QAEEERKQVE NERRELFEER ENSBTAP00000038454/1-722 MGTLQKFKQE STVATERQKR RQEIEQKLEV QAEEERKQVE NERRELFEER bmy_18135T0/1-732 MGTLQKFKQE STVATERQKR RQEIEQKLEV QAEEERKQVE NERRELFEER BACU007384/1-716 MGTLQKFKQE STVATERQKR RQEIEQKLEV QAEEERKQVE NERRELFEER 201 250 ENSTTRP00000016236/1-705 RAKQTELRLL EQKVELAQLQ EEWNEHNAKI IKYIRTKTKP HLFYIPGRMC ENSP00000216832/1-717 RAKQTELRLL EQKVELAQLQ EEWNEHNAKI IKYIRTKTKP HLFYIPGRMC ENSBTAP00000038454/1-722 RAKQTELRLL EQKVELAQLQ EEWNEHNAKI IKYIRTKTKP HLFYIPGRMC bmy_18135T0/1-732 RAKQTELRLL EQKVELAQLQ EEWNEHNAKI IKYIRTKTKP HLFYIPGRMC BACU007384/1-716 RAKQTELRLL EQKVELAQLQ EEWNEHNAKI IKYIRTKTKP HLFYIPGRMC 251 300 ENSTTRP00000016236/1-705 PATQKLIEES QRKMNALFEG RRIEFAEQIN KMEARPRRQS MKEKEHQ-VV ENSP00000216832/1-717 PATQKLIEES QRKMNALFEG RRIEFAEQIN KMEARPRRQS MKEKEHQ-VV ENSBTAP00000038454/1-722 PATQKLIEES QRKMNALFEG RRIEFAEQIN KMEARPRRQS MKEKEHQVVV bmy_18135T0/1-732 PATQKLIEES QRKMNALFEG RRIEFAEQIN KMEARPRRQS MKEKEHQ-VV BACU007384/1-716 PATQKLIEES QRKMNALFEG RRIEFAEQIN KMEARPRRQS MKEKEHQ-VV 301 350 ENSTTRP00000016236/1-705 RNEEQKSEQE EGKVAQREEE LEETGNQHND VEIEEA-EEE EKEI-VVHSD ENSP00000216832/1-717 RNEEQKAEQE EGKVAQREEE LEETGNQHND VEIEEAGEEE EKEIAIVHSD ENSBTAP00000038454/1-722 RNEEQKSEQE EGKVAQREEE LEETGNQHND VEIEEAGEDE EKEIGIVHSD bmy_18135T0/1-732 RNEEQKSEQE EGKVAQREEE LEETGNQHND VEIEEAGEEE EKEIGIVHSD BACU007384/1-716 RNEEQKSEQE EGKVAQREEE LEETGNQHND VEIEEAGEEE EKEIGIVHSD 351 400 ENSTTRP00000016236/1-705 AEKQEEETEH -----MELEE ETVWSE---- QDSQP-EVMD VLEMVESVKI ENSP00000216832/1-717 AEKEQEEEEQ KQEMEVKMEE ETEVRESEKQ QDSQPEEVMD VLEMVENVKH ENSBTAP00000038454/1-722 AEKEQEEEEQ KQEMEVKMEE ETEVRESEKQ QDSQPEEVMD VLEMVESVKN bmy_18135T0/1-732 AEKEQEEEEQ KQEMEVKMEE ETEVRESEKQ QDSQPEEVMD VLEMVESVKN BACU007384/1-716 AEKEQEEEEQ KQEMEVKMEE ETEVRESEKQ QDSQPEEVMD VLEMVESVKN 401 450 ENSTTRP00000016236/1-705 VIAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000216832/1-717 VIADQEVMET NRVESVEPSE NEASKELEPE MEFEIEPDKE CKTLSPGKEN ENSBTAP00000038454/1-722 VIAEQEVMEI NQVESIEPSE NETSKELEPE MEFEVEPDKE CKSVSPAKEN bmy_18135T0/1-732 VIAEQEVMEI NQVESIEPSE NETSKELEPE LEFEVEPDKE CKSLSPAKEN BACU007384/1-716 VIAEQEVMEI NQVESVEPSE NETSKELEPE LEFEVERDKE CKSLSPAKEN 451 500 ENSTTRP00000016236/1-705 XXXXXXXXXX XXXXXXXXXX XXXXXXH--- ---------S HSHSH----- ENSP00000216832/1-717 VSALDMEKES EEKEEKESEP QPEPVAQPQ- ---------P QSQPQ----- ENSBTAP00000038454/1-722 ASTLEMENEP EEKEEKESEP QPEPMAQPQS L--------P QPQPQ----- bmy_18135T0/1-732 ASALEMENEP EEK-EKESEP QPEPVAQPQS L--------P QPQPHSHSHS BACU007384/1-716 ASALEMENEP EEK-EKESEP QPEPVAQPQS LPQPQPQPQP QPQPHSHSHS 501 550 ENSTTRP00000016236/1-705 -------SHS HSQPQPQPVL QPQPLSQPET LPLAVSQPPP QVIQEQGHLP ENSP00000216832/1-717 ---------L QLQSQSQPVL QSQPPSQPED LSLAVLQPTP QVTQEQGHLL ENSBTAP00000038454/1-722 -------SQS QSQSQPQQVL QPPPLSQPET LPLAVSQPPP QVIQEQGHLP bmy_18135T0/1-732 HSHSHSXSHS QSHSQSQPVL QPQPLSQPET LPLAVSQPPP QVIQEQGHLP BACU007384/1-716 HSHSHSHSHS QSHSQSQPVL QPQPPSQPET LPLAVSQPPP QVIQEQGHLP 551 600 ENSTTRP00000016236/1-705 PERKEFPVES VKLTEVIVEP VLTVHSESKS KTKTRSRSRG RARNKTSKSR ENSP00000216832/1-717 PERKDFPVES VKLTEVPVEP VLTVHPESKS KTKTRSRSRG RARNKTSKSR ENSBTAP00000038454/1-722 PERKEFLVES VKLTEV-TEP VLTVHSESKN KTKTRSRSRG RARNKTSKSR bmy_18135T0/1-732 PERKEFPVES VKLTEVIVEP VLTVHSESKS KTKTRSRSRG RARNKTSKSR BACU007384/1-716 PERKEFPVES VKLTEVIVEP VLTVHSESKS KTKTRSRSRG RARNKTSKSR 601 650 ENSTTRP00000016236/1-705 SRSSSSSSSS SSSTSSSSGS SSSSGSSSSR SSSSSSSSTS GSSSRDSSSS ENSP00000216832/1-717 SRSSSSSSSS SSSTSSSSGS SSSSGSSSSR SSSSSSSSTS GSSSRDSSSS ENSBTAP00000038454/1-722 SRSSSSSSSS SSSTSSSSGS SSSSGSSSSR SSSSSSSSTS GSSSRDSSSS bmy_18135T0/1-732 SRSSSSSSSS SSSTSSSSGS SSSSGSSSSR SSSSSSSSTS GSSSRDSSSS BACU007384/1-716 SRSSSSSSSS SSSTSSSSGS SSSSGSSSSR SSSSSSSSTS GSSSRDSSSS 651 700 ENSTTRP00000016236/1-705 TTSSSESRSR SRGRGHNRDR KHRRSVDRKR RDASGLERSH KSSKGGSSRD ENSP00000216832/1-717 TSSSSESRSR SRGRGHNRDR KHRRSVDRKR RDTSGLERSH KSSKGGSSRD ENSBTAP00000038454/1-722 TTSSSESRSR SRGRGHNRDR KHRRSVDRKR RDASGLERSH KSAKGGSSRD bmy_18135T0/1-732 STSSSESRSR SRGRGHNRDR KHRRSVDRKR RDASGLERSH KSSKGGSSRD BACU007384/1-716 TTSSSESRSR SRGRGHNRDR KHRRSVDRKR RDASGLERSH KSSKGGSSRD 701 750 ENSTTRP00000016236/1-705 TKGSKDKNSR SDRKRSISES SRSGKRSSRS ERDRKSDRKD KRR ENSP00000216832/1-717 TKGSKDKNSR SDRKRSISES SRSGKRSSRS ERDRKSDRKD KRR ENSBTAP00000038454/1-722 AKGSKDKNSR SDRKRSISES SRSGKRSSRS ERDRKSDRKD KRR bmy_18135T0/1-732 TKGSKDKNSR SDRKRSISES SRSGKRSSRS ERDRKSDRKD KRR BACU007384/1-716 TKGSKDKNSR SDRKRSISES SRSGKRSSRS ERDRKSDRKD KRR