KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:44 2014 Check: 00 .. Name: bmy_08055T0/1-1330 Len: 1542 Check: 4704 Weight: 1.00 Name: ENSTTRP00000009875/1-1448 Len: 1542 Check: 9205 Weight: 1.00 Name: BACU017033/1-1334 Len: 1542 Check: 8348 Weight: 1.00 Name: ENSBTAP00000038495/1-1491 Len: 1542 Check: 4896 Weight: 1.00 Name: ENSP00000364000/1-1499 Len: 1542 Check: 754 Weight: 1.00 // 1 50 bmy_08055T0/1-1330 ------MRLF FLLLLLLLYL FYPPPPSPYP RDFAGVLEYW VRLVDGFEEG ENSTTRP00000009875/1-1448 MMANWVEARP LLILTILLGQ FVSIKA---Q EEDE------ -------DEG BACU017033/1-1334 -MNKMRSEHK EESDQITCGK GLSRENPPRR RSVT------ -------HKG ENSBTAP00000038495/1-1491 -MANWVEARP LLILTVLLGQ FVSIKA---Q EEDE------ -------DEG ENSP00000364000/1-1499 MMANWAEARP LLILIVLLGQ FVSIKA---Q EEDE------ -------DEG 51 100 bmy_08055T0/1-1330 YGEEIACTQN GQMYLNRDIW KPAPCQICVC DNGAILCDKI QCQDVLECAD ENSTTRP00000009875/1-1448 YGEEIACTQN GQMYLNRDIW KPAPCQICVC DNGAILCDKI QCQDVLECAD BACU017033/1-1334 YGEEIACTQN GQMYLNRDIW KPAPCQICVC DNGAILCDKI QCQDVLECAD ENSBTAP00000038495/1-1491 YGEEIACTQN GQMYLNRDIW KPAPCQICVC DNGAILCDKI QCQDVLECAD ENSP00000364000/1-1499 YGEEIACTQN GQMYLNRDIW KPAPCQICVC DNGAILCDKI ECQDVLDCAD 101 150 bmy_08055T0/1-1330 PITPPGECCP VCPHTTGSSN TNFGRGRKGQ KGEPGLVPVV TGIRGRPGPS ENSTTRP00000009875/1-1448 PVTPPGECCP VCPHTTGSSN TNFGRGRKGQ KGEPGLVPVV TGIRGRPGPS BACU017033/1-1334 PVTPPGECCP VCPHTTGSSN TNFGRGRK-- ---------V TGIRGRPGPS ENSBTAP00000038495/1-1491 PVTPPGECCP VCPHTTGGGN TNFGRGRKGQ KGEPGLVPVV TGIRGRPGPA ENSP00000364000/1-1499 PVTPPGECCP VCSQTPGGGN TNFGRGRKGQ KGEPGLVPVV TGIRGRPGPA 151 200 bmy_08055T0/1-1330 GPPGSQGPRG ERGPKGKPGP RGPQGIDGEP GVPGQPGAPG PPGHPSHPGP ENSTTRP00000009875/1-1448 GPPGSQGPRG ERGPKGKPGP RGPQGIDGEP GVPGQPGAPG PPGHPSHPGP BACU017033/1-1334 GPPGSQGPRG ERGPKGKPGP RGPQGIDGEP GVPGQPGAPG PPGHPSHPGP ENSBTAP00000038495/1-1491 GPPGSQGPRG ERGPKGKPGP RGPQGIDGEP GVPGQPGAPG PPGHPSHPGP ENSP00000364000/1-1499 GPPGSQGPRG ERGPKGRPGP RGPQGIDGEP GVPGQPGAPG PPGHPSHPGP 201 250 bmy_08055T0/1-1330 DGLSRPFSAQ MAGLDEKSGL GSQVGLMPGS VGPVGPRGPQ GLQGQQGGTG ENSTTRP00000009875/1-1448 DGMNRPFSAQ MAGLDEKSGL GSQVGLMPGS VGPVGPRGPQ GLQGQQGGTG BACU017033/1-1334 DGLSRPFSAQ MAGLDEKSGL GSQVGLMPGS VGPVGPRGPQ GLQGQQG--- ENSBTAP00000038495/1-1491 DGMSRPFSAQ MAGLDEKSGL GSQVGLMPGS VGPVGPRGPQ GLQGQQGGVG ENSP00000364000/1-1499 DGLSRPFSAQ MAGLDEKSGL GSQVGLMPGS VGPVGPRGPQ GLQGQQGGAG 251 300 bmy_08055T0/1-1330 PTGPPGEPGD PGPMVNVKVH LAHVDQRALL ENLGEPGRNG KAGEVGFAGS ENSTTRP00000009875/1-1448 PTGPPGEPGD PGPMGPLGTR GPEGPPGKPG ED-GEPGRNG KAGEVGFAGS BACU017033/1-1334 ---------- -----PLGTR GPEGPPGKPG ED-GEPGRNG KAGEVGFAGS ENSBTAP00000038495/1-1491 PAGPPGEPGD PGPMGPVGAR GPEGPPGKPG ED-GEPGRNG KPGEVGFAGS ENSP00000364000/1-1499 PTGPPGEPGD PGPMGPIGSR GPEGPPGKPG ED-GEPGRNG NPGEVGFAGS 301 350 bmy_08055T0/1-1330 PGARGFPGAP GLPGLKGHRG HKGLEGPKGE LGAIGSKGEA GPTGPMGAMG ENSTTRP00000009875/1-1448 PGARGFPGAP GLPGLKGHRG HKGLEGPKGE VGAIGSKGEA -PTDP-GAMG BACU017033/1-1334 PGARGFPGAP GLPGLKGHRG HKGLEGPKGE LGAIGSKGEA GPTG------ ENSBTAP00000038495/1-1491 PGARGFPGAP GLPGLKGHRG HKGLEGPKGE VGATGSKGEA GPTGPMGAMG ENSP00000364000/1-1499 PGARGFPGAP GLPGLKGHRG HKGLEGPKGE VGAPGSKGEA GPTGPMGAMG 351 400 bmy_08055T0/1-1330 PMGPRGMPGE RGRLGPQGAP ---------- -----GPLGI SGSSGFPGNP ENSTTRP00000009875/1-1448 PMGPRGMPGE RGRLGPQGAP XXXXXXXXXX XXXXXGPLGI TGSAGFPGNP BACU017033/1-1334 PMGA------ ---MGP---- ---------- ----MGPLGI PGSSGFPGNP ENSBTAP00000038495/1-1491 PMGPRGMPGE RGRLGPQGAP GQRGAHGMPG KPGPMGPLGI PGSAGFPGNP ENSP00000364000/1-1499 PLGPRGMPGE RGRLGPQGAP GQRGAHGMPG KPGPMGPLGI PGSSGFPGNP 401 450 bmy_08055T0/1-1330 GMKGEAGPTG ARGPEGPQGQ RGETGLPGPV GSQGLPGAVG TDGTPGAKGP ENSTTRP00000009875/1-1448 GLKGEAGPTG ARGPEGPQGQ RGETGLPGPV GSQGLP-AVG TDGTPGAKGP BACU017033/1-1334 GMKGEAGPTG ARGPEGPQGQ RGETGLPGPV GSQGLPGAVG TDGTPGAKGP ENSBTAP00000038495/1-1491 GMKGEAGPTG ARGPEGPQGQ RGETGPPGPV GSQGLPGAVG TDGTPGAKGP ENSP00000364000/1-1499 GMKGEAGPTG ARGPEGPQGQ RGETGPPGPV GSPGLPGAIG TDGTPGAKGP 451 500 bmy_08055T0/1-1330 TGSPGTSGPP GLAGPPGSPG PQGSTGPPGI RGQPGDPGVP GFKGEAGPKG ENSTTRP00000009875/1-1448 TGSPGTSGPP GLAGPPGSPG PQGSTGPPGI RGQPGDPGVP GFKGEAGPKG BACU017033/1-1334 TGSPGTSGPP GLAGPPGSPG PQGSTGPPGI RGQPGDPGVP GFKGEAGPKG ENSBTAP00000038495/1-1491 TGSPGTSGPP GLAGPPGSPG PQGSTGPPGI RGQPGDPGVP GFKGEAGPKG ENSP00000364000/1-1499 TGSPGTSGPP GSAGPPGSPG PQGSTGPQGI RGQPGDPGVP GFKGEAGPKG 501 550 bmy_08055T0/1-1330 EPGPHGIQGP IGPPGEEGKR GPRGDPGTVG PPGPMGERGA --PGNRGFPG ENSTTRP00000009875/1-1448 EPGPHGIQGP IGPPGEEGKR GPRGDPGTVG PPGPMGERGA --PGNRGFPG BACU017033/1-1334 EPGPHGIQGP IGPPGEEGKR GPRGDPGTVG PPGPVGERGA --PGNRGFPG ENSBTAP00000038495/1-1491 EPGPHGVQGP IGPPGEEGKR GPRGDPGTVG PPGPVGERLP LFACIPFFPD ENSP00000364000/1-1499 EPGPHGIQGP IGPPGEEGKR GPRGDPGTVG PPGPVGERGA --PGNRGFPG 551 600 bmy_08055T0/1-1330 SDGLPGPKGA QGERGPVGSS GPKGGQGDPG RPGEPGLPGA RGLTGNPGVQ ENSTTRP00000009875/1-1448 SDGLPGPKGA QGERGPVGSS GPKGGQGDPG RPGEPGLPGA RGLTGNPGVQ BACU017033/1-1334 SDGLPGPKGA QGERGPVGSS GPKGGQGDPG RPGEPGLPGA RGLTGNPGVQ ENSBTAP00000038495/1-1491 VFYFALKQGA QGERGPVGSS GPKGGQGDPG RPGEPGLPGA RGLTGNPGVQ ENSP00000364000/1-1499 SDGLPGPKGA QGERGPVGSS GPKGSQGDPG RPGEPGLPGA RGLTGNPGVQ 601 650 bmy_08055T0/1-1330 GPEGKLGPL- ---------- ---------- ---------- --GDPGKPGE ENSTTRP00000009875/1-1448 GPEGKLGPLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXGDPGKPGE BACU017033/1-1334 GPEGKLGPL- ---------- ---------- ---------- ---------- ENSBTAP00000038495/1-1491 GPEGKLGPLG APGEDGRPGP PGSIGIRGQP GSMGLPGPKG SSGDPGKPGE ENSP00000364000/1-1499 GPEGKLGPLG APGEDGRPGP PGSIGIRGQP GSMGLPGPKG SSGDPGKPGE 651 700 bmy_08055T0/1-1330 AGNAGVPGQR GAPGKDGEVG PSGPVGPPGL AGERGEQGPP GPTGF----- ENSTTRP00000009875/1-1448 AGNAGVPGQR GAPGKDGEVG PSGPVGPPGL AGERGEQGPP GPTGFQGLPG BACU017033/1-1334 ---------- GAPGKDGEVG PSGPVGPPGL AGERGEQGPP GPTGFQGLPG ENSBTAP00000038495/1-1491 AGNAGVPGQR GAPGKDGEVG PSGPVGPPGL AGERGEQGPP GPTGFQGLPG ENSP00000364000/1-1499 AGNAGVPGQR GAPGKDGEVG PSGPVGPPGL AGERGEQGPP GPTGFQGLPG 701 750 bmy_08055T0/1-1330 ---------- ---QGVPGDP GAVGPLGPRG ERGNPGERGE PGITGLPGEK ENSTTRP00000009875/1-1448 PPGPPGEGGK PGDQGVPGDP GAVGPLGPRG ERGNPGERGE PGITGLPGEK BACU017033/1-1334 PPGPPGEGGK PGDQGVPGDP GAVGPLGPRG ERGNPGERGE PGITGLPGEK ENSBTAP00000038495/1-1491 PPGPPGEAGK PGDQGVPGDP GAVGPLGPRG ERGNPGERGE PGITGLPGEK ENSP00000364000/1-1499 PPGPPGEGGK PGDQGVPGDP GAVGPLGPRG ERGNPGERGE PGITGLPGEK 751 800 bmy_08055T0/1-1330 GMAGGHGPDG PK-------- ---------- ---------- ---------- ENSTTRP00000009875/1-1448 GMAGGHGPDG PKGSPGPTGT PGDTGPPGLQ GMPGERGIAG TPGPKGDRGG BACU017033/1-1334 GMAGGHGPDG PKGNPGPSGT PGDTGPPGLQ GMPGERGIAG TPGPKGDRGG ENSBTAP00000038495/1-1491 GMAGGHGPDG PKGSPGPPGT PGDTGPPGLQ GMPGERGIAG TPGPKGDRGG ENSP00000364000/1-1499 GMAGGHGPDG PKGSPGPSGT PGDTGPPGLQ GMPGERGIAG TPGPKGDRGG 801 850 bmy_08055T0/1-1330 ---------- ------GLPG PLGPPGPAGP TGEKGEPGPR GLVGPPGSRG ENSTTRP00000009875/1-1448 IGEKGSEGTA GNDGARGLPG PLGPPGPAGP TGEKGEPGPR GLVGPPGSRG BACU017033/1-1334 IGEKGAEGTA GNDGARGLPG PLGPPGPAGP TGEKGEPGPR GLVGPPGSRG ENSBTAP00000038495/1-1491 IGEKGAEGTA GNDGARGLPG PLGPPGPSGP TGEKGEPGPR GLVGPPGSRG ENSP00000364000/1-1499 IGEKGAEGTA GNDGARGLPG PLGPPGPAGP TGEKGEPGPR GLVGPPGSRG 851 900 bmy_08055T0/1-1330 NPGSRGENGP TGAVGFAGPQ GPDGQPGVKG EPGEPGQKGD AGSPGPQGLA ENSTTRP00000009875/1-1448 NPGSRGENGP TGAVGFAGPQ GPDGQPGVKG EPGEPGQKGD AGSPGPQGLA BACU017033/1-1334 NPGSRGENGP TGAVGFAGPQ GPDGQPGVKG EPGEPGQKGD AGSPGPQGLA ENSBTAP00000038495/1-1491 NPGSRGENGP TGAVGFAGPQ GPDGQPGVKG EPGEPGQKGD AGSPGPQGLA ENSP00000364000/1-1499 NPGSRGENGP TGAVGFAGPQ GPDGQPGVKG EPGEPGQKGD AGSPGPQGLA 901 950 bmy_08055T0/1-1330 GSPGPHGPNG VPGLKGGRGT QGPPGATGFP GSAGRVGPPG PTGAPGPAGP ENSTTRP00000009875/1-1448 GSPGPHGPNG VPGLKGGRGT QGPPGATGFP GSAGRVGPPG PTGAPGPAGP BACU017033/1-1334 GSPGPHGPNG VPGLKGGRGT QGPPGATGFP GSAGRVGPPG PTGAPGPAGP ENSBTAP00000038495/1-1491 GSPGPHGPNG VPGLKGGRGT QGPPGATGFP GSAGRVGPPG PAGAPGPAGP ENSP00000364000/1-1499 GSPGPHGPNG VPGLKGGRGT QGPPGATGFP GSAGRVGPPG PAGAPGPAGP 951 1000 bmy_08055T0/1-1330 LGEPGKEGPP GLRGDPGSHG RLGDRGPAGP PGGPGDKGDP GEDGQPFVLK ENSTTRP00000009875/1-1448 LGEPGKEGPP GLPGDPGSHG RVGDRGPAGP PGGPGDKGDP GEDGQP---- BACU017033/1-1334 LGEPGKEGPP GLRGDPGSHG RLGDRGPAGP PGGPGDKGDP GEDGQP---- ENSBTAP00000038495/1-1491 LGEPGKEGPP GLRGDPGSHG RVGDRGPAGP PGGPGDKGDP GEDGQP---- ENSP00000364000/1-1499 LGEPGKEGPP GLRGDPGSHG RVGDRGPAGP PGGPGDKGDP GEDGQP---- 1001 1050 bmy_08055T0/1-1330 IRVQMVPLVQ LEQLGKEESS ACRGSVESEG CPAFQAQQLK ISMELEKEDN ENSTTRP00000009875/1-1448 ---------- ----GPDGPP GPAGTTGQRG IVGMPGQRGE RGM--PGLPG BACU017033/1-1334 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038495/1-1491 ---------- ----GPDGPP GPAGTTGQRG IVGMPGQRGE RGM--PGLPG ENSP00000364000/1-1499 ---------- ----GPDGPP GPAGTTGQRG IVGMPGQRGE RGM--PGLPG 1051 1100 bmy_08055T0/1-1330 LLGTPGKVGP TGAPGDKGPP GPVGPPGSNG PVGEPGPEGP AGNDGTPGRD ENSTTRP00000009875/1-1448 PAGTPGKVGP TGAPGDKGPP GPVGPPGSNG PVGEPGPEGP AGNDGTPGRD BACU017033/1-1334 --GTPGKVGP TGAPGDKGPP GPVGPPGSNG PVGESGPEGP AGNDGTPGRD ENSBTAP00000038495/1-1491 PAGTPGKVGP TGAPGDKGPP GPVGPPGSNG PVGEPGPEGP AGNDGTPGRD ENSP00000364000/1-1499 PAGTPGKVGP TGATGDKGPP GPVGPPGSNG PVGEPGPEGP AGNDGTPGRD 1101 1150 bmy_08055T0/1-1330 GAIGERGDRG DPGPAGLPGS QGAPGTPGPV GAPGDAGQRG DPGSRGPIGP ENSTTRP00000009875/1-1448 GAVGERGDRG DPGPAGLPGS QGAPGTPGPV GAPGDAGQRG DPGSRGPIGP BACU017033/1-1334 GAIGERGDRG DPGPAGLPGS QGAPGTPGPV GAPGDAGQRG DPGSRGPVGP ENSBTAP00000038495/1-1491 GAVGERGDRG DPGPAGLPGS QGAPGTPGPV GAPGDAGQRG DPGSRGPIGP ENSP00000364000/1-1499 GAVGERGDRG DPGPAGLPGS QGAPGTPGPV GAPGDAGQRG DPGSRGPIGP 1151 1200 bmy_08055T0/1-1330 PGRAGKRGLL GPQGPRGDKG DHGDRGDRGQ KGHRGFTGLQ GLPGPPGPNG ENSTTRP00000009875/1-1448 PGRAGKRGLL GPQGPRGDKG DHGDRGDRGQ KGHRGFTGLQ GLPGPPGPNG BACU017033/1-1334 PGRAGKRGLL GPQGPRGDKG DHGDRGDRGQ KGHRGFTGLQ GLPGPP---- ENSBTAP00000038495/1-1491 PGRAGKRGLL NPNFPNFGK- ---------- --YLRFKILH FSPNIXGPTG ENSP00000364000/1-1499 PGRAGKRGLP GPQGPRGDKG DHGDRGDRGQ KGHRGFTGLQ GLPGPPGPNG 1201 1250 bmy_08055T0/1-1330 EQGSAGIPGP FGPRGPPGPV GPSGKEGNPG PLGPIGPPGV RGSVGEAGPE ENSTTRP00000009875/1-1448 EQGSAGIPGP FGPRGPPGPV GPSGKEGNPG PLGPIGPPGV RGSVGEAGPE BACU017033/1-1334 ---------- ----GPPGPV GPSGKEGNPG PLGPIGPPGV RGSVGEAGPE ENSBTAP00000038495/1-1491 EQGSAGIPGP FGPRGPPGPV GPSGKEGSPG PLGPIGPPGV RGSVGEAGPE ENSP00000364000/1-1499 EQGSAGIPGP FGPRGPPGPV GPSGKEGNPG PLGPIGPPGV RGSVGEAGPE 1251 1300 bmy_08055T0/1-1330 GPPGEPGPPG PPGPPGHLTA ALGDIMGHYD ESMPDPLPEF TEDQAAPDDK ENSTTRP00000009875/1-1448 GPPGEPGPPG PPGPPGHLTA ALGDIMGHYD ESMPDPLPEF TEDQAAPDDK BACU017033/1-1334 GPPGEPGPPG PPGPPGHLTA ALGDIMGHYD ESMPDPLPEF TEDQAAPDDK ENSBTAP00000038495/1-1491 GPPGEPGPPG PPGPPGHLTA ALGDIMGHYD DSMPDPLPEF TEDQAAPDDK ENSP00000364000/1-1499 GPPGEPGPPG PPGPPGHLTA ALGDIMGHYD ESMPDPLPEF TEDQAAPDDK 1301 1350 bmy_08055T0/1-1330 NKTDPGVHAT LKSLSSQIET MRSPDGSRKH PARTCDDLKL CHSAKQS--- ENSTTRP00000009875/1-1448 NKTDPGVHAT LKSLSSQIET MRSPDGSRKH PARTCDDLKL CHSAKQS--- BACU017033/1-1334 NKTDPGVHAT LKSLSSQIET MRSPDGSRKH PARTCDDLKL CHSAKQS--- ENSBTAP00000038495/1-1491 NKTDPGVHAT LKSLSSQIET MRSPDGSRKH PARTCDDLKL CHSAKKSVWK ENSP00000364000/1-1499 NKTDPGVHAT LKSLSSQIET MRSPDGSKKH PARTCDDLKL CHSAKQS--- 1351 1400 bmy_08055T0/1-1330 -GEYWIDPNQ GSVEDAIKVY CNMETGETCI SANPSSVPRK TWWASKSPDN ENSTTRP00000009875/1-1448 -GEYWIDPNQ GSVEDAIKVY CNMETGETCI SANPSSVPRK TWWASKSPDN BACU017033/1-1334 -GEYWIDPNQ GSVEDAIRVY CNMETGETCI SANPSSVPRK TWWASKSPDN ENSBTAP00000038495/1-1491 TGEYWIDPNQ GSAEDAIKVY CNMETGETCI SANPSSVPRK TWWASKSPDN ENSP00000364000/1-1499 -GEYWIDPNQ GSVEDAIKVY CNMETGETCI SANPSSVPRK TWWASKSPDN 1401 1450 bmy_08055T0/1-1330 KPVWYGLDMN RGSQ------ ---------- ---------- ---------- ENSTTRP00000009875/1-1448 KPVWYGLDMN RGSQFVYGDH QSPNAAITQM TFLRLLSKEA SQNITYICKN BACU017033/1-1334 KPVWYGLDMN RGSQFVYGDH QSPNAAITQM TFLRLLSKEA SQNITYICKN ENSBTAP00000038495/1-1491 KPVWYGLDMN RGSQFVYGDH QSPNAAITQM TFLRLLSKEA SQNITYICKN ENSP00000364000/1-1499 KPVWYGLDMN RGSQFAYGDH QSPNTAITQM TFLRLLSKEA SQNITYICKN 1451 1500 bmy_08055T0/1-1330 ---------- ---------- ---------- ---------- ----KRNGNV ENSTTRP00000009875/1-1448 SVGYMDDQAK NFKKAVVLKG SNDLEIKAEG NVRFRYVVLH DTCS------ BACU017033/1-1334 SVGYMDDQAK NFKKAVVLKG SNDLEIKAEG NLRFRYVVLH DTCSKRNGNV ENSBTAP00000038495/1-1491 SVGYMDDQAK NLKKAVVLKG SNDLEIKAEG NVRFRYIVLH DSCSKRNGNV ENSP00000364000/1-1499 SVGYMDDQAK NLKKAVVLKG ANDLDIKAEG NIRFRYIVLQ DTCSKRNGNV 1501 1550 bmy_08055T0/1-1330 GKTIFEYRTQ NVARLPIIDL APVDVGSTDQ EFGIEVGPVC FV ENSTTRP00000009875/1-1448 ---------- ---------- ---------- ---------- -- BACU017033/1-1334 GKTIFEYRTQ NVARLPIIDL APVDVGSTDQ EFGIEVGPVC FV ENSBTAP00000038495/1-1491 GKTIFEYRTQ NVARLPIIDL APVDVGSTDQ EFGVEIGPVC FV ENSP00000364000/1-1499 GKTVFEYRTQ NVARLPIIDL APVDVGGTDQ EFGVEIGPVC FV