KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:46 2014 Check: 00 .. Name: ENSP00000371897/1-1502 Len: 1503 Check: 4835 Weight: 1.00 Name: ENSBTAP00000038500/1-1420 Len: 1503 Check: 2348 Weight: 1.00 Name: bmy_15613T0/1-1247 Len: 1503 Check: 5611 Weight: 1.00 Name: BACU008702/1-1503 Len: 1503 Check: 8541 Weight: 1.00 Name: ENSTTRP00000016233/1-1503 Len: 1503 Check: 8016 Weight: 1.00 // 1 50 ENSP00000371897/1-1502 MMAKNKEPRP PSYTISIVGL SGTEKDKGNC GVGKSCLCNR FVRSKADEYY ENSBTAP00000038500/1-1420 MMAKNKEPRP PSYTISVVGL SGTEKDKGNC GVGKSCLCNR FVRSKADEYY bmy_15613T0/1-1247 MMAKNKEPRP PSYTISVVGL SGTEKDKGNC GVGKSCLCNR FVRSKADEYY BACU008702/1-1503 MMAKNKEPRP PSYTISVVGL SGTEKDKGNC GVGKSCLCNR FVRSKADEYY ENSTTRP00000016233/1-1503 MMAKNKEPRP PSYTISVVGL SGTEKDKGNC GVGKSCLCNR YVRSKADEYY 51 100 ENSP00000371897/1-1502 PEHTSVLSTI DFGGRVVNND HFLYWGDIIQ NSEDGVECKI HVIEQTEFID ENSBTAP00000038500/1-1420 PEHTSVLSTI DFGGRVVNND HFLYWGDITQ SGEDGVECKI HVIEQTEFID bmy_15613T0/1-1247 PEHTSVLSTI DFGGRVVNND HFLYWGDITQ SGEDGVECKI HVIEQTEFID BACU008702/1-1503 PEHTSVLSTI DFGGRVVNND HFLYWGDITQ SGEDGVECKI HVIEQTEFID ENSTTRP00000016233/1-1503 PEHTSVLSTI DFGGRVVNND HFLYWGDITQ SGEDGVECKI HVIEQTEFID 101 150 ENSP00000371897/1-1502 DQTFLPHRST NLQPYIKRAA ASKLQSAEKL MYICTDQLGL EQDFEQKQMP ENSBTAP00000038500/1-1420 DQTFLPHRST NLQPYIKRAA ASKLQSAEKL MYICTDQLGL EQDFEQKQMP bmy_15613T0/1-1247 DQTFLPHRST NLQPYIKRAA ASKLQSAEKL MYICTDQLGL EQDFEQKQMP BACU008702/1-1503 DQTFLPHRST NLQPYIKRAA ASKLQSAEKL MYICTDQLGL EQDFEQKQMP ENSTTRP00000016233/1-1503 DQTFLPHRST NLQPYIKRAA ASKLQSAEKL MYICTDQLGL EQDFEQKQMP 151 200 ENSP00000371897/1-1502 EGKLNVDGFL LCIDVSQGCN RKFDDQLKFV NNLFVQLSKS KKPVIIAATK ENSBTAP00000038500/1-1420 EGKLNVDGFL LCIDVSQGCN RKFDDQLKFV NNLFVQLSKS KKPVIIAATK bmy_15613T0/1-1247 EGKLNVDGFL LCIDVSQGCN RKFDDQLKFV NNLFVQLSKS KKPVIIAATK BACU008702/1-1503 EGKLNVDGFL LCIDVSQGCN RKFDDQLKFV NNLFVQLSKS KKPVIIAATK ENSTTRP00000016233/1-1503 EGKLNVDGFL LCIDVSQGCN RKFDDQLKFV NNLFVQLSKS KKPVIIAATK 201 250 ENSP00000371897/1-1502 CDECVDHYLR EVQAFASNKK NLLVVETSAR FNVNIETCFT ALVQMLDKTR ENSBTAP00000038500/1-1420 CDECVDHYLR EVQAFASNKK NLLVVETSAR FNVNIETCFT ALVQMLDKTR bmy_15613T0/1-1247 CDECVDHYLR EVQAFASNKK NLLVVETSAR FNVNIETCFT ALVQMLDKTR BACU008702/1-1503 CDECVDHYLR EVQAFASNKK NLLVVETSAR FNVNIETCFT ALVQMLDKTR ENSTTRP00000016233/1-1503 CDECVDHYLR EVQAFASNKK NLLVVETSAR FNVNIETCFT ALVQMLDKTR 251 300 ENSP00000371897/1-1502 SKPKIIPYLD AYKTQRQLVV TATDKFEKLV QTVRDYHATW KTVSNKLKNH ENSBTAP00000038500/1-1420 GKPKIIPYLD AYKTQRQLVV TATDKFEKLV QTVRDYHATW KTVSNKLKNH bmy_15613T0/1-1247 GKPKIIPYLD AYKTQRQLVV TATDKFEKLV QTVRDYHATW KTVSNKLKNH BACU008702/1-1503 GKPKIIPYLD AYKTQRQLVV TATDKFEKLV QTVRDYHATW KTVSNKLKNH ENSTTRP00000016233/1-1503 GKPKIIPYLD AYKTQRQLVV TATDKFEKLV QTVRDYHATW KTVSNKLKNH 301 350 ENSP00000371897/1-1502 PDYEEYINLE GTRKARNTFS KHIEQLKQEH IRKRREEYIN TLPRAFNTLL ENSBTAP00000038500/1-1420 PDYEEYINLE GTRKARNTFS KHIEQLKQEH IRKRREEYIN TLPRAFNTLL bmy_15613T0/1-1247 PDYEEYINLE GTRKARNTFS KHIEQLKQEH IRKRREEYIN TLPRAFNTLL BACU008702/1-1503 PDYEEYINLE GTRKARNTFS KHIEQLKQEH IRKRREEYIN TLPRAFNTLL ENSTTRP00000016233/1-1503 PDYEEYINLE GTRKARNTFS KHIEQLKQEH IRKRREEYIN TLPRAFNTLL 351 400 ENSP00000371897/1-1502 PNLEEIEHLN WSEALKLMEK RADFQLCFVV LEKTPWDETD HIDKINDRRI ENSBTAP00000038500/1-1420 PNLEEIEHLN WSEALKLMEK RADFQLCFVV LEKTPWDETD HIDKINDRRI bmy_15613T0/1-1247 PNLEEIEHLN WSEALKLMEK RADFQLCFVV LEKTPWDETD HIDKINDRRI BACU008702/1-1503 PNLEEIEHLN WSEALKLMEK RADFQLCFVV LEKTPWDETD HIDKINDRRI ENSTTRP00000016233/1-1503 PNLEEIEHLN WSEALKLMEK RADFQLCFVV LEKTPWDETD HIDKINDRRI 401 450 ENSP00000371897/1-1502 PFDLLSTLEA EKVYQNHVQH LISEKRRVEM KEKFKKTLEK IQFISPGQPW ENSBTAP00000038500/1-1420 PFDLLSTLEA EKVYQNHVQH LISEKRRVEM KEKFKKTLEK IQFISPGQPW bmy_15613T0/1-1247 PFDLLSTLEA EKVYQNHVQH LISEKRRVEM KEKFKKTLEK IQFISPGQPW BACU008702/1-1503 PFDLLSTLEA EKVYQNHVQH LISEKRRVEM KEKFKKTLEK IQFISPGQPW ENSTTRP00000016233/1-1503 PFDLLSTLEA EKVYQNHVQH LISEKRRGEM KEKFKKTLEK IQFISPGQPW 451 500 ENSP00000371897/1-1502 EEVMCFVMED EAYKYITEAD SKEVYGRHQR EIVEKAKEEF QEMLFEHSEL ENSBTAP00000038500/1-1420 EEVMCFVMED EAFKYITEAD SKEVYGRHQR EIVEKAKEEF QEMLFEHSEL bmy_15613T0/1-1247 EEVMCFVMED EAFKYITEAD SKEVYGRHQR EIVEKAKEEF QEMLFEHSEL BACU008702/1-1503 EEVMCFVMED EAFKYITEAD SKEVYGRHQR EIVEKAKEEF QEMLFEHSEL ENSTTRP00000016233/1-1503 EEVMCFVMED EAFKYITEAD SKEVYGRHQR EIVEKAKEEF QEMLFEHSEL 501 550 ENSP00000371897/1-1502 FYDLDLNATP SSDKMSEIHT VLSEEPRYKA LQKLAPDRES LLLKHIGFVY ENSBTAP00000038500/1-1420 FYDLDLNATP SSDKMSEIHT VLSEEPRYKA LQKLAPDRES LLLKHIGFVY bmy_15613T0/1-1247 FYDLDLNATP SSDKMSEIHT VLSEEPRYKA LQKLAPDRES LLLKHIGFVY BACU008702/1-1503 FYDLDLNATP SSDKMSEIHT VLSEEPRYKA LQKLAPDRES LLLKHIGFVY ENSTTRP00000016233/1-1503 FYDLDLNATP SSDKMSEIHT VLSEEPRYKA LQKLAPDRES LLLKHIGFVY 551 600 ENSP00000371897/1-1502 HPTKETCLSG QNCTDIKVEQ LLASSLLQLD HGRLRLYHDS TNIDKVNLFI ENSBTAP00000038500/1-1420 HPTKETCLSG QNCTDIKVEQ LLASSLLQLD HGRLRLYHDS TNIDKVNLFI bmy_15613T0/1-1247 HPTKETCLSG QNCTDIKVEQ LLASSLLQLD HGRLRLYHDS TNIDKVNLFI BACU008702/1-1503 HPTKETCLSG QNCTDIKVEQ LLASSLLQLD HGRLRLYHDS TNIDKVNLFI ENSTTRP00000016233/1-1503 HPTKETCLSG QNCTDIKVEQ LLASSLLQLD HGRLRLYHDS TNIDKVNLFI 601 650 ENSP00000371897/1-1502 LGKDGLAQEL ANEIRTQSTD DEYALDGKIY ELDLRPVDAK SPYFLSQLWT ENSBTAP00000038500/1-1420 LGKDGLAQEL ANEIRTQSTD DEYALDGKIY ELDLRPVDAK SPYFLSQLWT bmy_15613T0/1-1247 LGKDGLSQEL ANEIRTQSTD DEYALDGKIY ELDLRPVDAK SPYFLSQLWT BACU008702/1-1503 LGKDGLSQEL ANEIRTQSTD DEYALDGKIY ELDLRPVDAK SPYFLSQLWT ENSTTRP00000016233/1-1503 LGKDGLSQEL ANEIRTQSTD DEYALDGKIY ELDLRPVDAK SPYFLSQLWT 651 700 ENSP00000371897/1-1502 AAFKPHGCFC VFNSIESLSF IGEFIGKIRT EASQIRKDKY MANLPFTLIL ENSBTAP00000038500/1-1420 AAFKPHGCFC VFNSIESLNF IGEFIGKIRT EASQIRKDKY MANLPFTLIL bmy_15613T0/1-1247 AAFKPHGCFC VFNSIESLNF IGEFIGKIRM EASQIRKDKY MANLPFTLIL BACU008702/1-1503 AAFKPHGCFC VFNSIESLNF IGEFIGKIRT EASQIRKDKY MANLPFTLIL ENSTTRP00000016233/1-1503 AAFKPHGCFC VFNSIESLNF IGEFIGKIRT EASQIRKDKY MANLPFTLIL 701 750 ENSP00000371897/1-1502 ANQRDSISKN LPILRHQGQQ LANKLQCPFV DVPAGTYPRK FNETQIKQAL ENSBTAP00000038500/1-1420 ANQRDSISKN LPILRHQGQQ LANKLX---- ---------- ---------- bmy_15613T0/1-1247 ANQRDSITKN LPILRHQGQQ LANKLQCPFV DVPAGTYPRK FNETQIKQAL BACU008702/1-1503 ANQRDSISKN LPILRHQGQQ LANKLQCPFV DVPAGTYPRK FNETQIKQAL ENSTTRP00000016233/1-1503 ANQRDSISKN LPILRHQGQQ LANKLQCPFV DVPAGTYPRK FNETQIKQAL 751 800 ENSP00000371897/1-1502 RGVLESVKHN LDVVSPIPAN KDLSEADLRI VMCAMCGDPF SVDLILSPFL ENSBTAP00000038500/1-1420 ---------- ---------- ---------- ---------- ---------- bmy_15613T0/1-1247 RGVLESVKHN LDVVSPVPTN KDVSEADLRI VMCAMCGDPF SVDLILSPFL BACU008702/1-1503 RGVLESVKHN LDVVSPVPTN KDVSEADLRI VMCAMCGDPF SVDLILSPFL ENSTTRP00000016233/1-1503 RGVLESVKHN LDVVSPVPTN KDVSEADLRI VMCAMCGDPF SVDLILSPFL 801 850 ENSP00000371897/1-1502 DSHSCSAAQA GQNNSLMLDK IIGEKRRRIQ ITILSYHSSI GVRKDELVHG ENSBTAP00000038500/1-1420 --------QA GQNN-LMLDK IIGEKRRRIQ ITILSYHSSI GVRKDELVHG bmy_15613T0/1-1247 DSHSCSAAQA GQNNSLMLDK IIGEKRRRIQ ITILSYHSSI GVRKDELVHG BACU008702/1-1503 DSHSCSAAQA GQNNSLMLDK IIGEKRRRIQ ITILSYHSSI GVRKDELVHG ENSTTRP00000016233/1-1503 DSHSCSAAQA GQNNSLMLDK IIGEKRRRIQ ITILSYHSSI GVRKDELVHG 851 900 ENSP00000371897/1-1502 YILVYSAKRK ASMGMLRAFL SEVQDTIPVQ LVAVTDSQAD FFENEAIKEL ENSBTAP00000038500/1-1420 YILVYSAKRK ASMGMLRAFL SEVQDTIPVQ LVAVTDSQAD FFENEAIKEL bmy_15613T0/1-1247 YILVYSAKRK ASMGMLRAFL SEVQDTIPVQ LVAVTDSQAD FFENEAIKEL BACU008702/1-1503 YILVYSAKRK ASMGMLRAFL SEVQDTIPVQ LVAVTDSQAD FFENEAIKEL ENSTTRP00000016233/1-1503 YILVYSAKRK ASMGMLRAFL SEVQDTIPVQ LVAVTDSQAD FFENEAIKEL 901 950 ENSP00000371897/1-1502 MTEGEHIATE ITAKFTALYS LSQYHRQTEV FTLFFSDVLE KKNMIENSYL ENSBTAP00000038500/1-1420 MTEGEHIATE ISAKFTALYS LSQYHRQTEV FTLFFSDVLE KKNMIENSYL bmy_15613T0/1-1247 MTEGEHIATE ITAKFTALYS LSQYHRQTEV FTLFFSDVLE KKNMIENSYL BACU008702/1-1503 MTEGEHIATE ITAKFTALYS LSQYHRQTEV FTLFFSDVLE KKSMIENSYL ENSTTRP00000016233/1-1503 MTEGEHIATE ITAKFTALYS LSQYHRQTEV FTLFFSDVLE KKNMIENSYL 951 1000 ENSP00000371897/1-1502 SDNTRESTHQ SEDVFLPSPR DCFPYNNYPD SDDDTEAPPP YSPIGDDVQL ENSBTAP00000038500/1-1420 SDSTRESTHQ SEDVFLPSPR DCFPYNNYPD SDDDTEAPPP YSPIGDDVQL bmy_15613T0/1-1247 SDNTRESTHQ SEDVFLPSPR DCFPYNSYPD SDDDTEAPPP YSPIGDDVQL BACU008702/1-1503 SDNTRESTHQ SEDVFLPSPR DCFPYNNYPD SDDDTEAPPP YSPIGDDVQL ENSTTRP00000016233/1-1503 SDNTRESTHQ SEDVFLPSPR DCFPYNNYPD SDDDTEAPPP YSPIGDDVQL 1001 1050 ENSP00000371897/1-1502 LPTPSDRSRY RLDLEGNEYP IHSTPNCHDH ERNHKVPPPI KPKPVVPKTN ENSBTAP00000038500/1-1420 LPTPSDRSRY RLDLEGNEYP IHSTPNCHDH ERNHKVPPPI KPKPVAPKTN bmy_15613T0/1-1247 LPTPSDRSRY RLDLEGNEYP IHSTPNCHDH ERNHKVPPPI KPKPVVPKTN BACU008702/1-1503 LPTPSDRSRY RLDLEGNEYP IHSTPNCHDH ERNHKVPPPI KPKPVVPKTN ENSTTRP00000016233/1-1503 LPTPSDRSRY RLDLEGNEYP IHSTPNCHDH ERNHKVPPPI KPKPVVPKTN 1051 1100 ENSP00000371897/1-1502 VKKLDPNLLK TIEAGIGKNP RKQTSRVPLA HPEDMDPSDN YAEPIDTIFK ENSBTAP00000038500/1-1420 VKKLDPNLLK TIEAGIGKNP RKQTSRVPLA HPEDMDPSDN YSEPIDTIFK bmy_15613T0/1-1247 VKKLDPNLLK TIEAGIGKNP RKQTSRVPLA HPEDMDPSDN YSEPIDTIFK BACU008702/1-1503 VKKLDPNLLK TIEAGIGKNP RKQTSRVPLA HPEDMDPSDN YSEPIDTIFK ENSTTRP00000016233/1-1503 VKKLDPNLLK TIEAGIGKNP RKQTSRVPLA HPEDMDPSDN YSEPIDTIFK 1101 1150 ENSP00000371897/1-1502 QKGYSDEIYV VPDDSQNR-I KIRNSFVNNT QGDEENGFSD RTSKSHGERR ENSBTAP00000038500/1-1420 QKGYSDEIYV VPDDSQNRVI KIRNSFVNNT QGDEENGFSD RTSKSHGERR bmy_15613T0/1-1247 QKGYSDEIYV VPDDSQNRII KIRNSFVNNT QGDEENGFSD RISKSLGERR BACU008702/1-1503 QKGYSDEIYV VPDDSQNRII KIRNSFVNNT QGDEENGFSD RISKSHGERR ENSTTRP00000016233/1-1503 QKGYSDEIYV VPDDSQNRII KIRNSFVNNT QGDEENGFSD RISKSHGERR 1151 1200 ENSP00000371897/1-1502 PSKYKYKSKT LFSKAKSYYR RTHSDASDDE AFTTSKTKRK GRHRGSEEDP ENSBTAP00000038500/1-1420 PSKYKYKSKT LFSKAKSYYR RTHSDASDDE AFTTSKTKRK GRHRGSEEDP bmy_15613T0/1-1247 PSKYKYKSKT LFSKAKSYYR RTHSDASDDE AFTTSKTKRK GRHRGSEEDP BACU008702/1-1503 PSKYKYKSKT LFSKAKSYYR RTHSDASDDE AFTTSKTKRK GRHRGSEEDP ENSTTRP00000016233/1-1503 PSKYKYKSKT LFSKAKSYYR RTHSDASDDE AFTTSKTKRK GRHRGSEEDP 1201 1250 ENSP00000371897/1-1502 LLSPVETWKG GIDNPAITSD QELDDKKMKK KTHKVKEDKK QKKKTKNFNP ENSBTAP00000038500/1-1420 LLSPVETWKG GIDNPAITSD QELDDKKMKK KTHKVKEDKK QKKKTKNFNP bmy_15613T0/1-1247 LLSPVETWKG GIDNPAITSD QELDDKKMKK KTHKVKEDK- ---------- BACU008702/1-1503 LLSPVETWKG GIDNPAITSD QELDDKKMKK KTHKVKEDKK QKKKTKNFNP ENSTTRP00000016233/1-1503 LLSPVETWKG GIDNPAITSD QELDDKKMKK KTHKVKEDKK QKKKTKNFNP 1251 1300 ENSP00000371897/1-1502 PTRRNWESNY FGMPLQDLVT AEKPIPLFVE KCVEFIEDTG LCTEGLYRVS ENSBTAP00000038500/1-1420 PTRRNWESNY FGMPLQDLVT AEKPIPLFVE KCVEFIEDTG LCTEGLYRVS bmy_15613T0/1-1247 ---------- ---------- ---------- ---------- ---------- BACU008702/1-1503 PTRRNWESNY FGMPLQDLVT AEKPIPLFVE KCVEFIEDTG LCTEGLYRVS ENSTTRP00000016233/1-1503 PTRRNWESNY FGMPLQDLVT AEKPIPLFVE KCVEFIEDTG LCTEGLYRVS 1301 1350 ENSP00000371897/1-1502 GNKTDQDNIQ KQFDQDHNIN LVSMEVTVNA VAGALKAFFA DLPDPLIPYS ENSBTAP00000038500/1-1420 GNKTDQDNIQ KQFDQDHNIS LVSMEVTVNA VAGALKAFFA DLPDPLIPYS bmy_15613T0/1-1247 ---------- ---------- ---------- ---------- ---------- BACU008702/1-1503 GNKTDQDNIQ KQFDQDHNIS LVSMEVTVNA VAGALKAFFA DLPDPLIPYS ENSTTRP00000016233/1-1503 GNKTDQDNIQ KQFDQDHNIS LVSMEVTVNA VAGALKAFFA DLPDPLIPYS 1351 1400 ENSP00000371897/1-1502 LHPELLEAAK IPDKTERLHA LKEIVKKFHP VNYDVFRYVI THLNRVSQQH ENSBTAP00000038500/1-1420 LHPELLEAAK ILDKAERLHA LKEIVKKFHP VNYDVFRYII THLNRVSQHN bmy_15613T0/1-1247 ---------- ---------- ---------- ---------- ---------- BACU008702/1-1503 LHPELLEAAK IPDKTERLHA LKEIVKKFHP VNYDVFRYVI THLNRVSQHN ENSTTRP00000016233/1-1503 LHPELLEAAK IPDKTERLHA LKEIVKKFHP VNYDVFRYVI THLNRVSQHN 1401 1450 ENSP00000371897/1-1502 KINLMTADNL SICFWPTLMR PDFENREFLS TTKIHQSVVE TFIQQCQFFF ENSBTAP00000038500/1-1420 KVNLMTADNL SICFWPTLMR PDFENREFLS TTKIHQSVVE TFIQQCQFFF bmy_15613T0/1-1247 KVSLMYGS-- ---------- ---------- ---------- ---------- BACU008702/1-1503 KVNLMTADNL SICFWPTLMR PDFENREFLS TTKIHQSVVE TFIQQCQFFF ENSTTRP00000016233/1-1503 KVNLMTADNL SICFWPTLMR PDFENREFLS TTKIHQSVVE TFIQQCQFFF 1451 1500 ENSP00000371897/1-1502 YNGEIVETTN IVAPPPPSNP GQLVEPMVPL QLPPPLQPQL IQPQLQTDPL ENSBTAP00000038500/1-1420 YNGEIVETAN TVAPAPPSNP GQLVEPMVPL QLPPPLQPQL IQPQLQTDPL bmy_15613T0/1-1247 ---------- ---------- ---------- ---------- ---------- BACU008702/1-1503 YNGEIVETVN TVAPPPPSNP GQLVEPMVPL QLPPPLQPQL IQPQLQTDPL ENSTTRP00000016233/1-1503 YNGEIVETAN TVAPPPPSNP GQLVEPMVPL QLPPPLQPQL IQPQLQTDPL 1501 1550 ENSP00000371897/1-1502 GII ENSBTAP00000038500/1-1420 GII bmy_15613T0/1-1247 --- BACU008702/1-1503 GII ENSTTRP00000016233/1-1503 GII