KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:47 2014 Check: 00 .. Name: ENSP00000456609/1-706 Len: 709 Check: 1845 Weight: 1.00 Name: ENSBTAP00000038534/1-668 Len: 709 Check: 7687 Weight: 1.00 Name: ENSTTRP00000003787/1-664 Len: 709 Check: 2901 Weight: 1.00 Name: bmy_11977T0/1-668 Len: 709 Check: 5929 Weight: 1.00 Name: BACU017920/1-660 Len: 709 Check: 9157 Weight: 1.00 // 1 50 ENSP00000456609/1-706 MGGKGGGDTR GPVLFPCQLA QALSPRRAFP RELKEKGQRM SSQPAGNQTS ENSBTAP00000038534/1-668 ---------- ---------- ---------- ---------M STQAAGNQTS ENSTTRP00000003787/1-664 ---------- ---------- ---------- ---------M STQVAGNQTS bmy_11977T0/1-668 ---------- ---------- ---------- ---------M STQAAGNQTS BACU017920/1-660 ---------- ---------- ---------- ---------M STQAAGNQTS 51 100 ENSP00000456609/1-706 PGATEDY-SY GSWYIDEPQG GEELQPEGEV PSCHTSIPPG LYHACLASLS ENSBTAP00000038534/1-668 SGATDSEDSY DSWYIDEPQG GQELQPEGLV PSCQPNVPPS LYHTCLAVLS ENSTTRP00000003787/1-664 SGATDDDDSY GSWYIDEPQG GQELEPEGLV PSCHPSVPPG LYHACLVVLS bmy_11977T0/1-668 XGATDDDDSY GSWYIDEPQG GQELEPEGLV PSCHPSVPPG LYHACLVVLS BACU017920/1-660 SGATDDDDSY GSWYIDEPQG GQELEPEGLV PSCRSSVPPG LYHACLVVLS 101 150 ENSP00000456609/1-706 ILVLLLLAML VRRRQLWPDC VRGRPGLPSP VDFLAGDRPR AVPAAVFMVL ENSBTAP00000038534/1-668 ILVLFLLAML VRRRQLWPRC GHGRPGLPSP VDFLTGDRPR TVPAAVFMVL ENSTTRP00000003787/1-664 ILVLLLLAML VKRRQLWPHC GHGRPGLPS- VD--AEDRPR TVPAAVFTVL bmy_11977T0/1-668 VLVLLLLAML VKRRQLWPHC GHGRPGLPSP VDFLAGDRPR TVPAAIFTVL BACU017920/1-660 ILVLLLLAML VKRRQLWPHC GHGRPGLPSP VDFLAGDGPR TVPAAIFTVL 151 200 ENSP00000456609/1-706 LSSLCLLLPD EDALPFLTLA SAPSQDGKTE APRGAWKILG LFYYAALYYP ENSBTAP00000038534/1-668 FSSLCLLLPT EDPLPFLSLA SPPGRDGEAE TSRGPWKILA LLYYPALYYP ENSTTRP00000003787/1-664 FSSLCLLLPT EDPLPFLTLA LPPGQDGETE TPRGPWKILA LLYYPALYYP bmy_11977T0/1-668 FSSLCLLLPT EDPLPFLTLA LPPGQDGETE TPRGPWKILA LLYYPALYYP BACU017920/1-660 FSSLCLLLPT EDPLPFLTLA LPPGQ----- ---GPWKILA LLYYPALYYP 201 250 ENSP00000456609/1-706 LAACATAGHT AAHLLGSTLS WAHLGVQVWQ RAECPQVPKI YKYYSLLASL ENSBTAP00000038534/1-668 LAACATVRHG AAHLLGSLLS WAHLGVQVWQ RAECPESPKI YKYYSLLASL ENSTTRP00000003787/1-664 LAVCATVRHR AAHLLGSVLS WAHLGVQVWQ RAECPVSPKI YRYYSLLASL bmy_11977T0/1-668 LAVCATVRHG AAHLLGSVLS WAHLGVQVWQ RAECPVSPKI YKYYSLLASL BACU017920/1-660 LAVCATVGHG AAHLLGSVLS WAHLGVQVWQ RAECPVSPKI YKYYSLLASL 251 300 ENSP00000456609/1-706 PLLLGLGFLS LWYPVQLVRS FSRRTGAGSK GLQSSYSEEY LRNLLCRKKL ENSBTAP00000038534/1-668 PLLLGLGFLS LWYPVQLVRS FGHGAATGSK GLQSSYSEEY LRTLLCQKKL ENSTTRP00000003787/1-664 PLLLGLGFLS LWYPVQLVKS FSHGAAAGSK GLQNSYSEEY LRTLLCQKKL bmy_11977T0/1-668 PLLLGLGFLS LWYPVQLVKS FSHGAAAGSK GLQNNYSEEY LRTLLCQKKL BACU017920/1-660 PLLLGLGYLS LWYPVQLVKS FSHGAAAGSK GLQNNYSEEY LRTLLCQKKL 301 350 ENSP00000456609/1-706 GSSYHTSKHG FLSWARVCLR HCIYTPQPGF HLPLKLVLSA TLTGTAIYQV ENSBTAP00000038534/1-668 KSSSHTCKRG FASQAWMYFR HSVYIPQQGF RLPLKLVLSV TLTGTAIYQV ENSTTRP00000003787/1-664 KSSSHTSKQG FLSRAWIYFR HYIYTPQRGF RLPLKLVLSV TLTGTAIYQV bmy_11977T0/1-668 KSSSHTSKQG FLSRAWIYFR HYIYTPQRGF RLPLKLVLSV TLTGTAIYQV BACU017920/1-660 KSSSHMSKQG FLSRAWIYFR HYIYTPQRGF RLPLKLVLSV TLTGTAIYQV 351 400 ENSP00000456609/1-706 ALLLLVGVVP TIQKVRAGVT TDVSYLLAGF GIVLSEDKQE VVELVKHHLW ENSBTAP00000038534/1-668 ALLLLVGVVP TIQKVRAGIT TDVSYLLAGF GIVLSEDRQE VVELVKHHLW ENSTTRP00000003787/1-664 ALLLLVGVVP TIQKVRAGIT TDISYLLAGF GIVLSEDKQE VVELVKHYLW bmy_11977T0/1-668 ALLLLVGVVP TIQKVRAGIT MDVSYLLAGF GIVLSEDRQE VVELVKHYLW BACU017920/1-660 ALLLLVGVVP TIQRVRAGIT TDVSYLLAGF GIVLSEDRQE VVELVKHYLW 401 450 ENSP00000456609/1-706 ALEVCYISAL VLSCLLTFLV LMRSLVTHRT NLRALHRGAA LDLSPLHRSP ENSBTAP00000038534/1-668 ALEVCYISAL VLSCLLTFLM LVHSLVTHRT NLRALHRGGA LDIGPLTQSP ENSTTRP00000003787/1-664 ALEVCYISAL VLSCLFTFLM LTRSLVTHRA NLRALHRGGA LDLGPRPPSP bmy_11977T0/1-668 ALEVCYISAL VLSCLLTFLM LTRSLVTHRA NLRALHRGGA LDLGPRPQSP BACU017920/1-660 ALEVCYISAL VLSCLLTFLM LTRSLVTHRS NLRALHRGGA LDLGPRPQSP 451 500 ENSP00000456609/1-706 HPSRQAIFCW MSFSAYQTAF ICLGLLVQQI IFFLGTTALA FLVLMPVLHG ENSBTAP00000038534/1-668 RPSRQAIFCW MSFTAYQTAF TCLGLLVQQI LFFLGTLTLA FLVFMPMLHG ENSTTRP00000003787/1-664 RPSRQAIFCW MSFTAYQTAF TCLGLLVQQI LFFLGTLALT FLVFMPVLHG bmy_11977T0/1-668 RPSRQAIFCW MSFTAYQTAF TCLGLLVQQI LFFLGTLALA FLVFMPVLHG BACU017920/1-660 RPSRQAIFCW MSFTAYQTAF TCLGLLVQQI LFFLGTLALA FLVFMPVLHG 501 550 ENSP00000456609/1-706 RNLLLFRSLE SSWPFWLTLA LAVILQNMAA HWVFLETHDG HPQLTNRRVL ENSBTAP00000038534/1-668 RNLLLLHYLK SSWPFWLTLA LAVTLQNAAA HWAFLDTHHG RPGLTNRRAL ENSTTRP00000003787/1-664 RNLLLLRSLK SSWPFWLTLA LAVTLQNMAA HWVFLDTHHG RPELTNRRAL bmy_11977T0/1-668 RNLLLLRFLK SSWPFWLTLA LAVTLQNMAA HWVFLDTHHG RPELTNRRAL BACU017920/1-660 RNLLLLRSLK SSWPFWLTLA LAVTLQNMAA HWVFLDTHHG RPELTNRRAL 551 600 ENSP00000456609/1-706 YAATFLLFPL NVLVGAMVAT WRVLLSALYN AIHLGQMDLS LLPPRAATLD ENSBTAP00000038534/1-668 YAATFLLFPV NVLVGTMVAA WRVLLSALYN AVHLGRMDLS LLPLRAATLD ENSTTRP00000003787/1-664 YATTFLLFPI NVLVGTMMAA WRVLLSALYN AVHLGQMDLS LLPPRAATFD bmy_11977T0/1-668 YAATFLLFPI NVLVGAMMAA WRVLLSALYN AVHLGQMDLS LLPPRAATFD BACU017920/1-660 YAATFLLFPI NVLVGATMAA WRVLLSALYN AVHLGQMDLS LLPPRAATFD 601 650 ENSP00000456609/1-706 PGYYTYRNFL KIEVSQSHPA MTAFCSLLLQ AQSLLPRTMA APQDSLRPGE ENSBTAP00000038534/1-668 PGYHTYCNFL RMEASQSHPA ATAFCALLLR TQRPKPRA-- TPQDGLRLGE ENSTTRP00000003787/1-664 PGYHTYCNFL KMEASQSHPA STAFCVLLLR TRRPQPRT-- APRDGLRLGE bmy_11977T0/1-668 PGYHTYCNFL KMEVSQSHPA LTAFCALLLR TRRPQPRT-- VPRDGLSLGE BACU017920/1-660 PGYHTYCNFL KMEVSQSHPA LTAFCALLLR TRRPQPRT-- VPRDGLRLGE 651 700 ENSP00000456609/1-706 EDEGMQLLQT KDSMAKGARP GASRGRARWG LAYTLLHNPT LQVFRKTALL ENSBTAP00000038534/1-668 EEEGIQLLQT KDLVAKGAGP RARQGRARWG LAYTLLHNPA LQAFRKTALP ENSTTRP00000003787/1-664 EEEGMQ-LQT KDRAAKGAGP RVGRGRARWG LAYTLLHNPA LQAFRKTALS bmy_11977T0/1-668 EEEGMRLLQT KDRVAKGAGP GVGRGRARWA LAYTLLHNPA LQAFRKTALS BACU017920/1-660 EEEGKQLLQT KDRVAKGAGP RVGRGRARWG LAYTLLHNPA LQAFRKTALS 701 750 ENSP00000456609/1-706 GA--NGAQP ENSBTAP00000038534/1-668 GARPNGAQP ENSTTRP00000003787/1-664 DARANGAQP bmy_11977T0/1-668 DARANGAQP BACU017920/1-660 DAPANGAQP