KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:47 2014 Check: 00 .. Name: BACU016281/1-230 Len: 527 Check: 5426 Weight: 1.00 Name: ENSTTRP00000012522/1-294 Len: 527 Check: 8061 Weight: 1.00 Name: ENSP00000347684/1-406 Len: 527 Check: 3778 Weight: 1.00 Name: bmy_04050T0/1-409 Len: 527 Check: 5389 Weight: 1.00 Name: ENSBTAP00000038577/1-294 Len: 527 Check: 4934 Weight: 1.00 // 1 50 BACU016281/1-230 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012522/1-294 MDIATGPESL ERCFPRGQTD CAKMLDGIKM EEHALRPGPA TLGVLLGSDC ENSP00000347684/1-406 MDIATGPESL ERCFPRGQTD CAKMLDGIKM EEHALRPGPA TLGVLLGSDC bmy_04050T0/1-409 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038577/1-294 ---------- ---------- ---------- ---------- ---------- 51 100 BACU016281/1-230 ---------M RP-------- ---------- ---------- ---------- ENSTTRP00000012522/1-294 PHPAVCEGCQ RPISDRFLMR VNESSWHEEC LQCAACQQAL TTSCYFRDRK ENSP00000347684/1-406 PHPAVCEGCQ RPISDRFLMR VNESSWHEEC LQCAACQQAL TTSCYFRDRK bmy_04050T0/1-409 ---------M RPLCTC---- ---------- ---------- ---------- ENSBTAP00000038577/1-294 ---------- ---------- ---------- ---------- ---------- 101 150 BACU016281/1-230 ---------- ---------- -IGPPAL--- ---------- ------RRAL ENSTTRP00000012522/1-294 LYCKQDYQQL FAAKCSGCME KIAPTEFVMR ALECVYHLGC FCCCVCERQL ENSP00000347684/1-406 LYCKQDYQQL FAAKCSGCME KIAPTEFVMR ALECVYHLGC FCCCVCERQL bmy_04050T0/1-409 --------RL FAAKCSGCME KIAPTEFVMR ALECVYHLGC FCCCVCERQL ENSBTAP00000038577/1-294 --------RL FAAKCSGCME KIAPTEFVMR ALECVYHLGC FCCCVCERQL 151 200 BACU016281/1-230 RRPA------ ---------L RARDSSAGLL PAAAEPPSRM PGEGGPGPGP ENSTTRP00000012522/1-294 RKGDEFVLKE GQLLCKGDYE KEKDLLSSVS PDESDSVKSE DEDGDMKPAK ENSP00000347684/1-406 RKGDEFVLKE GQLLCKGDYE KEKDLLSSVS PDESDSVKSE DEDGDMKPAK bmy_04050T0/1-409 RKGDEFVLKE GQLLCKGDYE KEKDLLSSVS PDESDSVKSE DEDGDMKPAK ENSBTAP00000038577/1-294 RKGDEFVLKE GQLLCKGDYE KEKDLLSSVS PDESDSVKSE DEDGDMKPAK 201 250 BACU016281/1-230 ASGAQGLGFP GCARTGDQGR VRETPHLLIT VLDTKTPRN- ---------- ENSTTRP00000012522/1-294 GQGSQSKG-- ----SGDDGK DPRRPKRPRT ILTTQQRRAF KASFEVSSKP ENSP00000347684/1-406 GQGSQSKG-- ----SGDDGK DPRRPKRPRT ILTTQQRRAF KASFEVSSKP bmy_04050T0/1-409 GQGSQSKG-- ----SGDDGK DPRRPKRPRT ILTTQQRRAF KASFEVSSKP ENSBTAP00000038577/1-294 GQGSQSKG-- ----SGDDGK DPRRPKRPRT ILTTQQRRAF KASFEVSSKP 251 300 BACU016281/1-230 TRR------- ---------- ---------- ---------- ---------- ENSTTRP00000012522/1-294 CRK------- ---------- ---------- ---------- ---------- ENSP00000347684/1-406 CRK------- ---------- ---------- ---------- ---------- bmy_04050T0/1-409 CRKVRGGWGG VEADPPARAA FPDTTPSAPA GGWASLPLPA HPPKPAASQL ENSBTAP00000038577/1-294 CRK------- ---------- ---------- ---------- ---------- 301 350 BACU016281/1-230 ---------- -------HKD THTNKT---- -VGHTSTQNH SET------- ENSTTRP00000012522/1-294 ---------- -------VRE TLAAETGLSV RVVQVWFQNQ RAK------- ENSP00000347684/1-406 ---------- -------VRE TLAAETGLSV RVVQVWFQNQ RAK------- bmy_04050T0/1-409 LPPRLPPGLT RLLRHGQVRE TLAAETGLSV RVVQVWFQNQ RAKAPATPLD ENSBTAP00000038577/1-294 ---------- -------VRE TLAAETGLSV RVVQVWFQNQ RAK------- 351 400 BACU016281/1-230 ---------- ---------- ---------- --------RR YTKTHKGGTK ENSTTRP00000012522/1-294 ---------- ---------- ---------- -------MMI LARILLQHLE ENSP00000347684/1-406 ---------- ---------- ---------- -------MKK LARRHQQQQE bmy_04050T0/1-409 RGGMGRGCRQ KARGLMRVGR ERSGAGGGDW HTLCLLQMKK LARRHQQQQE ENSBTAP00000038577/1-294 ---------- ---------- ---------- -------MKK LARRHQQQQE 401 450 BACU016281/1-230 THKQKR---- ---------- --IPDTIRRM KDIQRPWHPH RVTDTGTHTK ENSTTRP00000012522/1-294 KKSNRL---- ---------- ---------- ---------- ---------- ENSP00000347684/1-406 QQNSQRLGQG EPGPGQGLGQ EVLSSRMEGM MASYTPLAPP QQQIVAMEQS bmy_04050T0/1-409 QQNSQR---- -------LGQ EVLSSRMEGM MASYTPLAPP QQQIVAMEQS ENSBTAP00000038577/1-294 QQNSQR---- -------LGQ EVLSSRMEGM MASYTPLAPP QQQIVAMEQS 451 500 BACU016281/1-230 TYKNTEEIEA CSDCPHPAVC EGCQRPISDR FLMRVNESSW H--EECLQCA ENSTTRP00000012522/1-294 ---------- ---------- ---------- ---------- ---------- ENSP00000347684/1-406 PYGSSDPFQQ GLTPPQMP-- -----GNDSI FHDIDSDTSL TSLSDCFLGS bmy_04050T0/1-409 PYGSSDPFQQ GLTPPQMPGD HMNPYGNDSI FHDIDSDTSL TSLSDCFLGS ENSBTAP00000038577/1-294 PYGSSDPFQQ GLTPPQMPGD HMNPYGNDSI FHDIDSDTSL TSLSDCFLGS 501 550 BACU016281/1-230 ACQQALTTSC YFRDRKLYCK QD--YQQ ENSTTRP00000012522/1-294 -CQ------- ---------- ------- ENSP00000347684/1-406 SDVGSLQARV GNPIDRLYSM QSSYFAS bmy_04050T0/1-409 SDVGSLQARV GNPIDRLYSM QSSYFAS ENSBTAP00000038577/1-294 SDVGSLQARV GNPIDRLYSM QSSYFAS