KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:48:49 2014 Check: 00 .. Name: ENSP00000373472/1-1686 Len: 1831 Check: 1111 Weight: 1.00 Name: ENSBTAP00000038623/1-1670 Len: 1831 Check: 4307 Weight: 1.00 Name: bmy_13464T0/1-1387 Len: 1831 Check: 9283 Weight: 1.00 Name: BACU004852/1-1592 Len: 1831 Check: 7130 Weight: 1.00 // 1 50 ENSP00000373472/1-1686 MPGGPSPRSP APLLRPLLLL LCALAPGAPG PAPGRATEGR AALDIVHPVR ENSBTAP00000038623/1-1670 MPSGPSPRSP APLLRPLLLF LSVLAPGAHG SAPGRPNKIR ESLDCIPPAR bmy_13464T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU004852/1-1592 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000373472/1-1686 VDAGGSFLSY ELWPRALRKR DVSVRRDAPA FYELQYRGRE LRFNLTANQH ENSBTAP00000038623/1-1670 IPRAG----H KARTSPRARQ DQRLGQTSDG PVSYLHLRAW ELWRRKRENK bmy_13464T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU004852/1-1592 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000373472/1-1686 LLAPGFVSET RRRGGLGRAH IRAHTPACHL LGEVQ-DPEL EGGLAAISAC ENSBTAP00000038623/1-1670 SVSPGVAAHS QKWGGQAQAS LFSRVPVMTL IAQPPPPPRF PGEQALASSY bmy_13464T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU004852/1-1592 --------ME SRWVG----- ---------- -ARDRADPEL EGGLAAISAC 151 200 ENSP00000373472/1-1686 DGLKGVFQLS NEDYFIEPLD SAPARPGHAQ PHVVYKRQAP ERLAQRGDSS ENSBTAP00000038623/1-1670 GLRKGVFQLS NEDYFIEPLD GVPARPGHAQ PHVVYKRQVP EKWAEPGDSR bmy_13464T0/1-1387 ---------- ------MGLS GCPLCP---- ---------- ---------- BACU004852/1-1592 DGLKGVFQLS NEDYFIEPLD GVPARPGRAQ PHVVYKRQAP ERWAEPGDPR 201 250 ENSP00000373472/1-1686 APSTCGVQVY PELESRRERW EQRQQWRRPR LRRLHQRSVS KEKWVETLVV ENSBTAP00000038623/1-1670 APGTCGVKEF PELEPQRERW EQRQQWRRQR LRHRYQRSVS KEKWVETLVV bmy_13464T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU004852/1-1592 APGTCGVKES PELEPRRERW EQRQQWRRQR PRRLHQRSVS KEKWVETLVV 251 300 ENSP00000373472/1-1686 ADAKMVEYHG QPQVESYVLT IMNMVAGLFH DPSIGNPIHI TIVRLVLLED ENSBTAP00000038623/1-1670 ADTKMVEYHG QPNVESYVLT IMNMVAGLFH DPSIGNPIHI TIVRLILLED bmy_13464T0/1-1387 --------RG Q--------- ---------- ---------- ---------- BACU004852/1-1592 ADAKMVEYHG QPNVESYVLT IMNMVAGLFH DPSIGNPIHI TIVRLVLLED 301 350 ENSP00000373472/1-1686 EEEDLKITHH ADNTLKSFCK WQKSINMKGD AHPLHHDTAI LLTRKDLCAA ENSBTAP00000038623/1-1670 EEEDLKISHH ADNTLRSFCK WQKSINMKGD AHPLHHDTAI LLTSKVLVHR bmy_13464T0/1-1387 ---------- ---------- ---------- ---------- ---------- BACU004852/1-1592 EEEDLKITHH ADNTLRSFCK WQKGINMKRD AHPLHHDTAI LLTRKDLCAA 351 400 ENSP00000373472/1-1686 MNRPCETLGL SHVAGMCQPH RSCSINEDTG LPLAFTVAHE LGHSFGIQHD ENSBTAP00000038623/1-1670 HSRPC--LEM FSIARLCSLE LQCKVGEFGA LPLA-----E EPLSFALPEL bmy_13464T0/1-1387 ---------- ------VAPH ---------- ---------- ---------- BACU004852/1-1592 MNQPCETLGL SHVAGMCQPH RSCNINEDTG LPLAFTVAHE LGHSFGIQHD 401 450 ENSP00000373472/1-1686 GSGNDCEPVG KRPFIMSPQL LYDAAPLTWS RCSRQYITRF LDRGWGLCLD ENSBTAP00000038623/1-1670 STGGHALSRH PLWGIKSPLL ALRSAPPQPW ECQQSTLV-F LSRGWGLCLD bmy_13464T0/1-1387 ---------- ---FIVLSHL ---------- -CS------- --RGWGLCLD BACU004852/1-1592 GSGNDCEPVG KRPFIMSPQL LYDAAPLTWS RCSREYITRF LDRGWGLCLD 451 500 ENSP00000373472/1-1686 DPPAKDIIDF PSVPPGVLYD VSHQCRLQYG AYSAFCEDMD NVCHTLWCSV ENSBTAP00000038623/1-1670 DSPSKDVIDF PSIPPGVLYD VGHQCRLQYG AYSAFCDDMD NVCHTLWCSV bmy_13464T0/1-1387 DSPTKDVIDF PSIPPGVLYD VGHQCRLQYG AYSAFCDDMD NVCHTLWCSV BACU004852/1-1592 DSPTKDVIDF PSIPPGVLYD VGHQCRLQYG AYSAFCDDMD NVCHTLWCSV 501 550 ENSP00000373472/1-1686 GTTCHSKLDA AVDGTRCGEN KWCLSGECVP VGFRPEAVDG GWSGWSAWSI ENSBTAP00000038623/1-1670 GTTCHSKLDA AVDGTSCGES KWCLNGECVP VGFRPEAVDG GWSGWSAWSL bmy_13464T0/1-1387 GTTCHSKLDA AVDGTRCGES KWCLNGECVP MGFRPEAVDG GWSGWSAWSV BACU004852/1-1592 GTTCHSKLDA AVDGTRCGES KWCLNGECVP MGFRPEAVDG GWSGWSAWSV 551 600 ENSP00000373472/1-1686 CSRSCGMGVQ SAERQCTQPT PKYKGRYCVG ERKRFRLCNL QACPAGRPSF ENSBTAP00000038623/1-1670 CSRSCGMGVQ SAERQCTQPA PKYKGKYCVG ERKRFRLCSL QACPAGRPSF bmy_13464T0/1-1387 CSRSCGVGVQ SAERQCTQPA PKYKGKYCVG ERKRFRLCNL QACPAGRPSF BACU004852/1-1592 CSRSCGVGVQ SAERQCTQPA PKYKGRYCVG ERKRFRLCNL QACPAGRPSF 601 650 ENSP00000373472/1-1686 RHVQCSHFDA MLYKGQLHTW VPVVNDVNPC ELHCRPANEY FAEKLRDAVV ENSBTAP00000038623/1-1670 RQVQCSHFDA MLYKGQLHTW VPVVNDVNPC ELHCRPSNEY FAEKLRDAVV bmy_13464T0/1-1387 RQVQCSHFDA MLYKGQLHTW VPVVNDVNPC ELHCRPSNEY FAEKLRDAVV BACU004852/1-1592 RQVQCSHFDA MLYKGQLHTW VPVVNDVNPC ELHCRPSNEY FAEKLRDAVV 651 700 ENSP00000373472/1-1686 DGTPCYQVRA SRDLCINGIC KNVGCDFEID SGAMEDRCGV CHGNGSTCHT ENSBTAP00000038623/1-1670 DGTPCYQGQA SRDLCINGIC KNVGCDFEID SGAVEDRCGV CHGNGSTCHT bmy_13464T0/1-1387 DGTPCYQGQA SRDLCINGIC KNVGCDFEID SGAIEDRCGV CHGNGSTCHT BACU004852/1-1592 DGTPCYQGQA SRDLCINGIC KNVGCDFEID SGAIEDRCGV CHGNGSTCHT 701 750 ENSP00000373472/1-1686 VSGTFEEAEG LGYVDVGLIP AGAREIRIQE VAEAANFLAL RSEDPEKYFL ENSBTAP00000038623/1-1670 VSGTFEEAEG LGYVDVGLIP VGAREIRIVE VAEAGNFLAL RSEDPDKYFL bmy_13464T0/1-1387 VSGTFEEAEG LGYVDVGLIP AGAREIRIEE VAEAANFLAL RSEDPDKYFL BACU004852/1-1592 VSGTFEEAEG LGYVDVGLIP AGAREIRIEE VAEAANFLAL RSEDPDKYFL 751 800 ENSP00000373472/1-1686 NGGWTIQWNG DYQVAGTTFT YARRGNWENL TSPGPTKEPV WIQLLFQESN ENSBTAP00000038623/1-1670 NGGWTIQWNG DYEVAGTTFT YARTGNWENL TSPGPTDEPV WIQLLFQESN bmy_13464T0/1-1387 NGGWIIQWNG DYQVAGTTFT YARTGNWENL TSPGPTDEPI WIQLLFQESN BACU004852/1-1592 NGGWIIQWNG DYQVAGTTFT YARTGNWENL TSPGPTDEPI WIQLLFQESN 801 850 ENSP00000373472/1-1686 PGVHYEYTIH REAGGHDEVP PPVFSWHYGP WTKCTVTCGR GVQRQNVYCL ENSBTAP00000038623/1-1670 PGVRYEYIIH READGHDHIQ PPEFSWRYGP WSKCTVTCGT GMQRQSVHCT bmy_13464T0/1-1387 PGVRYEYIIH READGHSQIQ PPEFSWHYGP WTKCTVT--- WMQRQSARCT BACU004852/1-1592 PGVRYEYIIH READGHSQIQ PPEFSWHYGP WTKCTVTCGT GMQRQSARCV 851 900 ENSP00000373472/1-1686 ERQAGPVDEE HCDPLGRPDD QQR-KCSEQP CPARWWAGEW QLCSSSCGPG ENSBTAP00000038623/1-1670 ERQAGPVDER HCDPLDRPDD RQR-KCSEEP CPARWWAGEW QLCSSSCGPG bmy_13464T0/1-1387 ERQAGPVDER HCERLGRPDD RQR-KCSEEP CPARWWAGEW QLCSSSCGPG BACU004852/1-1592 ERQAGPVDER HCEPLGRPDD RQRKKCSEEP CPARWWAGEW QLCSSSCGPG 901 950 ENSP00000373472/1-1686 GLSRRAVLCI RSVGLDEQSA LEPPACEHLP RPPTETPCNR HVPCPATWAV ENSBTAP00000038623/1-1670 GLSRRAVLCI RSVGLDEQRA LEPPACEHLP QPPAETPCNR DVPCPATWAV bmy_13464T0/1-1387 GLSRRAVLCI HSVGLDEQSA LEPPACEHLP RPPAETPCNR DVPCPATWAV BACU004852/1-1592 GLSRRAVLCI HSVGLDEQSA LEPPACEHLP RPPAETPCNR DVPCPATWAV 951 1000 ENSP00000373472/1-1686 GNWSQCSVTC GEGTQRRNVL CTNDTGVPCD EAQQPASEVT CSLPLCRWPL ENSBTAP00000038623/1-1670 GNWSECSVTC GPGTQRRSIL CINDTGVPCD EAQQPAREAA CLLPPCPQAL bmy_13464T0/1-1387 GNWSECSVTC GPGTQHRSIL CTNDTGVPCD EDQQPASEAA CLLPPCPRAL BACU004852/1-1592 GNWSECSVTC GPGTQHRSIL CTNDTGVPCD EDQQPASEAA CRLPPCPRAL 1001 1050 ENSP00000373472/1-1686 GTLGPEGSGS GSSSHELFNE ADFIPHHLAP RPSPASSPKP GTMGNAIEEE ENSBTAP00000038623/1-1670 DTLGPEGSGS GSFSPELFNE VDFIPSHLAP RPPLPSSPEP AGMGNAIEED bmy_13464T0/1-1387 DVLGPEGSGS GSSSRELFNE VDFIPHHPAP RPPPPSSPKP AGMGNAIGEE BACU004852/1-1592 DVLGPEGSGS GSSSRELFNE VDFIPHRPAP RPPPPSSPKP AGMGNAIGEE 1051 1100 ENSP00000373472/1-1686 APELDLPGPV FVDDFYYDYN FINFHEDLSY GPSEEPDLDL AGTGDRTPPP ENSBTAP00000038623/1-1670 GHELGLPGPV FVDDFYYDYN FINFHEDLSY GPFEDPDSEP VGTGDWRPPP bmy_13464T0/1-1387 DPELGPPGPV FVDDFYYDYN FINFHENLSY GPFEEPDTDL AGTGDWMPPP BACU004852/1-1592 DPELGPPGPM FVDDFYYDYN FINFHENLSY GPFGEPDADP AGTGGWMPPP 1101 1150 ENSP00000373472/1-1686 HSHPAAPSTG SPVPATEPPA AKEEGVLGPW SPSPWPSQAG RSPPPPSEQT ENSBTAP00000038623/1-1670 PSTAAEPPTG TPVLPTEPPG TRDEGALGDG YPAPWPSQAG PSPPPPSEQT bmy_13464T0/1-1387 LSSPAEPPVG TPMPTTEPSG PEDEGALGDW SPAPWPSQAG RSPPPPSEQT BACU004852/1-1592 PSSPAEPPAG TPTPATEPSG PEDGGALGDW SPAPWPSQAG RSPPPPSEQT 1151 1200 ENSP00000373472/1-1686 PGNPLINFLP EEDTPIGAPD LGLPSLSWPR VSTDGLQTPA TPESQNDFPV ENSBTAP00000038623/1-1670 PGNSLVNFLP EEDAPIGAPD LGLPSLPWPP TSI-SMETPA APGSQNQFLG bmy_13464T0/1-1387 PGNSLVNFLF EEDASIGAPD LGLPSLPWPP TSV-SMEMPA APGSQNKFLE BACU004852/1-1592 PGNSLVNFLF EEDAPIGAPD LGLPSLPWPP TPV-SMETPA APGSQNKFLG 1201 1250 ENSP00000373472/1-1686 GKDSQSQLPP PWRDRTNEVF KDDEEPKGRG APHLPPRPSS TLPPLSPVGS ENSBTAP00000038623/1-1670 AEDSQSLPPA PRWERTNEVS -DDEEALGRG APLPPQRPSP TSPSLSSAGT bmy_13464T0/1-1387 GEDSHSQPPP PWWERTNEVS EDSEEALGRR A---PQRPSP TLPTLSSIST BACU004852/1-1592 GEDSHSQPPP PWWERTNEVS EDSEEDLGRR A---PQRPSP TLPPLSSIST 1251 1300 ENSP00000373472/1-1686 THSSPSPDVA ELWTGGTVAW EPALEGGLGP VDSELWPTVG VASLLPPPIA ENSBTAP00000038623/1-1670 THSSPSPRTV ELWTSGTAAW EPALEGSLGP LDSELWPTVG GAPPLPPPTT bmy_13464T0/1-1387 SHSSPSPDTV ELWTSGTLAW EPALEGGLGP VGNELWPTVG GAPP-PPPTA BACU004852/1-1592 SHSSPSPDTV ELWTSGTLAW EPALEGGLGP VGNELWPTVG GAPP-PPPTA 1301 1350 ENSP00000373472/1-1686 PLPEMKVRDS SLEPGTPSFP TPGPGSWDLQ TVAVWGTFLP TTLTGLGHMP ENSBTAP00000038623/1-1670 ALPDTQGTDS PLELGTATFS TPGPTLQNLQ TLAMPGTFLL MAPTGLGHMP bmy_13464T0/1-1387 SLPDTQGTDS ALEPGTPTLS TPDLALRDLQ TLAMPGTFLL KAPTGLGHTP BACU004852/1-1592 SLPDTQGTDS ALEPGTSTLS TPDLALRDLQ TLAMPGTFLL KAPTGLGHTP 1351 1400 ENSP00000373472/1-1686 -EPALNPGPK GQPESLSPEV PLSSRLLSTP AWDSPANSHR VPETQPLAPS ENSBTAP00000038623/1-1670 WVTPQSLGPL GQPEPPSSKM LPSPGLLSTP AQDSPANSSR APG--PLDPS bmy_13464T0/1-1387 WVTALSLGPL GQPESPSPET PPSPVLLSIP AQDSPANGSR APG--PLDPS BACU004852/1-1592 WVTALSLGPL GQPESPSPET PPSPVPLSIP AQDSPANSSR APG--PLDPS 1401 1450 ENSP00000373472/1-1686 LAEAGPPADP LVVRNAGWQA GNW------- ---------- ---------- ENSBTAP00000038623/1-1670 PVEEGFPVDL LPARNASWEV GNW------- ---------- ---------- bmy_13464T0/1-1387 SAEEGPPVDL LPVRNASWQV GNW-----SE ASGAGVGVGR GVEQDLT--- BACU004852/1-1592 SAEEEPPVDL LPVRNASWQV GNWRLHLLCR ACEGLNCMAR SCPVSLTPPQ 1451 1500 ENSP00000373472/1-1686 -------SEC STTCGLGAVW RPVRCSSGRD EDCAPAGRPQ PARRCHLRPC ENSBTAP00000038623/1-1670 -------SQC STTCGLGAVW RLVRCSSGRE EDCAPAGRPQ PARRCHLRPC bmy_13464T0/1-1387 -------NLC STTCGLGAVW RPVRCSSGRE EDCTPAARPQ PARRCHLRPC BACU004852/1-1592 RPQVVTVGEC STTCGLGAVW RPVRCSSGRE EDCTPAARPQ PARRCHLRPC 1501 1550 ENSP00000373472/1-1686 ATWHSGNWSK ---------- ---------- -CSRSC---- --GGG----- ENSBTAP00000038623/1-1670 AAWHMGNWSK ---------- ---------- -CSRSC---- --GGG----- bmy_13464T0/1-1387 AAWHTGSWSK VREGEGGQHR GTGWSSGARG LCLGSAIATG GAGGGRLCAA BACU004852/1-1592 AAWHTGSWSK ---------- ---------- -CSRSC---- --GGG----- 1551 1600 ENSP00000373472/1-1686 ---------- ---------- ---------S SVRDVQ---- ---------- ENSBTAP00000038623/1-1670 ---------- ---------- ---------S STRDVQ---- ---------- bmy_13464T0/1-1387 HLCTLISSLW DHSTCVPLAT LPAAQGFSLG PLRDLPRVGV RVPSARPATA BACU004852/1-1592 ---------- ---------- ---------S SVRDVQ---- ---------- 1601 1650 ENSP00000373472/1-1686 ---------- --CVDTRDLR P--------- -LRPFHCQPG PAKPPAHR-- ENSBTAP00000038623/1-1670 ---------- --CVDTRDLQ P--------- -LRPFHCQPG PTKPPARR-- bmy_13464T0/1-1387 LTASSCARTW WWCVHTRDPR PPVLPQLWRG FLRAGRAVCG HTGPPAAAAL BACU004852/1-1592 ---------- --CVDTRDLQ P--------- -LRPFHCQPG PAKPPARR-- 1651 1700 ENSP00000373472/1-1686 PCGAQPCLSW YTSSWRE--- ---CSEACGG GEQQRLVTCP EPGLCEEALR ENSBTAP00000038623/1-1670 PCGAQPCLSW YTSSWRE--- ---CSEACGG GEQQRLVTCP EPGLCEEALR bmy_13464T0/1-1387 PLPAGACQAA CPPALRGPAL PQLCSEACGG GEQQRLVTCP EPGLCEEALR BACU004852/1-1592 PCGAQPCLSW YISSWRE--- ---CSEACGG GEQQRLVTCP EPGLCEEALR 1701 1750 ENSP00000373472/1-1686 PNTTRPCNTH PCTQWVVGPW GQCSGPCGGG VQRRLVKCVN TQTGLPEEDS ENSBTAP00000038623/1-1670 PNSTRSCNTH PCTQWVVGPW GQCSAPCGGG VQRRLVKCVN TQTGLPEEDS bmy_13464T0/1-1387 PNSTRPCNTH PCTQWVVGPW GQCSAPCGGG VQRRLVKCVN TQTGLPEEDS BACU004852/1-1592 PNSTRPCNTH PCTQWVVGPW GQCSAPCGGG VQRRLVKCVN TQTGLPEEDS 1751 1800 ENSP00000373472/1-1686 DQCGHEAWPE SSRPCGTEDC EPVEPPRCER DRLSFGFCET LRLLGRCQLP ENSBTAP00000038623/1-1670 DLCGHEAWPE SSRPCGTQDC ELTEPPRCER DRLSFGFCET LRLLGRCQLP bmy_13464T0/1-1387 DQCGHEAWPE SSQPCGTQDC ELTEPPRIYR FEVQLGFLLD WGIFKSETTP BACU004852/1-1592 DQCGHEAWPE SSRPCGTQDC ELTEPPRCER DRLSFGFCET LRLLGRCQLP 1801 1850 ENSP00000373472/1-1686 TIRTQCCRSC S--PPSHGAP SRGHQRVARR - ENSBTAP00000038623/1-1670 TVRAQCCRSC P--PP--GVP SRGHQRVARR - bmy_13464T0/1-1387 LLQQTASFHL LLWEAHRGEG SRAH--VGRK A BACU004852/1-1592 TVRTQCCRSC P--PPGRGAP SRGHQRVARR -