KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:54 2014 Check: 00 .. Name: ENSP00000229769/1-536 Len: 673 Check: 1155 Weight: 1.00 Name: ENSTTRP00000008930/1-541 Len: 673 Check: 5367 Weight: 1.00 Name: ENSBTAP00000038717/1-540 Len: 673 Check: 3284 Weight: 1.00 Name: bmy_10972T0/1-500 Len: 673 Check: 6931 Weight: 1.00 Name: BACU018055/1-650 Len: 673 Check: 5846 Weight: 1.00 // 1 50 ENSP00000229769/1-536 MATPDAGLPG AEGVEP-APW AQLEAPARLL LQ---ALQAG ---------P ENSTTRP00000008930/1-541 MEAPEAAPAQ AEGAEP-APW AHLEAPARLL LQ---TLQAG ---------P ENSBTAP00000038717/1-540 MEALEAETAR AEDAEPAAPW ARLEAPGRLL LQ---ALQAG ---------P bmy_10972T0/1-500 MEAPEAAPAQ AEGAEP-APW AHLEAPARLL LQ---ALQAG ---------P BACU018055/1-650 MSDPVQELL- -------APL QSLDLEVQQR VQDSRDIVCG ICMDKVWNKP 51 100 ENSP00000229769/1-536 EGAR------ ---------- -------RG- --LGVLRA-- ---------- ENSTTRP00000008930/1-541 DGAR------ ---------- -------RG- --LGVLRA-- ---------- ENSBTAP00000038717/1-540 DGAR------ ---------- -------RG- --LGVLRT-- ---------- bmy_10972T0/1-500 DGAR------ ---------- -------RG- --LGVLRA-- ---------- BACU018055/1-650 EAERIFGVLP NCSHPHCLGC LRTWRKSRGD FPLGVIKACP QCRVPSSYII 101 150 ENSP00000229769/1-536 ---------- ---------- ---------- -LGSRGWEPF ---------- ENSTTRP00000008930/1-541 ---------- ---------- ---------- -LSGRGGEPF ---------- ENSBTAP00000038717/1-540 ---------- ---------- ---------- -LSGRGGEPF ---------- bmy_10972T0/1-500 ---------- ---------- ---------- -LSGRGGEPF ---------- BACU018055/1-650 PCKFWVSKGP EKEQLIRNFK ARTSQIRCRF FMRGNGRCPF KSDCIYLHQL 151 200 ENSP00000229769/1-536 ---------D WGRLLE--AL CREEPVVQGP D--------- GRLE------ ENSTTRP00000008930/1-541 ---------G WDRVFE--AL CREEPVVEGP D--------- CRLE------ ENSBTAP00000038717/1-540 ---------A WGGVLE--AL CREEPVVEGP D--------- CRLE------ bmy_10972T0/1-500 ---------G WDRVFE--AL CQEEPVVEGA D--------- CRLE------ BACU018055/1-650 PDKAPSSDPS WPGSMQLASV VGKTAFLGGT EPEEEVFFMN CALTMAFWGS 201 250 ENSP00000229769/1-536 ---------- ---LKPLLLR LPRICQRNLM SLLMAVRPSL PESGLLSVLQ ENSTTRP00000008930/1-541 ---------- ---LXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038717/1-540 ---------- ---LKPLLLR LPPLCRRNLM SLLMAVWPSL PESRLLPVLQ bmy_10972T0/1-500 ---------- ---LKPLLLR LPPLCQRNLM SLLMAVWPXL PESSLLPVLQ BACU018055/1-650 ELFLDPNSSY HCLLKPLLLR LPPLCQRNLM SLLMAVWPSL PESSLLPVLQ 251 300 ENSP00000229769/1-536 IAQQDLAPDP DAWLRALGEL LRRDLGVGTS MEGASPLSER CQRQLQSLCR ENSTTRP00000008930/1-541 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSPLSKR CQRQLRGLCR ENSBTAP00000038717/1-540 VARQDPSPDP DPWLQALGEF LQRDLSAGVS TDGASPLSER CQRQLQGLCR bmy_10972T0/1-500 IVQRDPSPDP DPWLRALGEF LRRDLGVGVS IEGASPLSKR CQRQLRGLCR BACU018055/1-650 IVQQDPSPDP DPWLRALGEF LRRDLGVGVS IEGASPLSKR CQRQLRGLCR 301 350 ENSP00000229769/1-536 GLGLGGRRLK SPQAPDP--- -EEEENRDSQ QPGKRRKDSE EEAASPEGKR ENSTTRP00000008930/1-541 QLGQGSRKLK LPQAPDPEGT -EQEEDKDSQ RPGKRRKEAE EEPASPEGER ENSBTAP00000038717/1-540 RLGQGGRKLK LPPTPDSEGE GGQEEDKDSQ QPGKRRKEPE EKPVSPEGER bmy_10972T0/1-500 QLGQGGRKLK LAQAPDPEGK EEQEEVEDSQ RPGKRRKEWE EEPASPEGGR BACU018055/1-650 QLGQGGRKLK LPQAPDPEGK EEQEEVEDSQ RPGKRRKERE EEPASPEGGR 351 400 ENSP00000229769/1-536 VPKRLRCWE- -EEEDHEKER PEHKSLESLA DGGSASPIKD QPVMAVKTGE ENSTTRP00000008930/1-541 APKRLRWLEK EEEESHEENR PEHESLESLA NGGGASSIKN QPVLGAKPSE ENSBTAP00000038717/1-540 APKRLRCLEK ---EGHEDKR PEHESLESLA DGGGASSITN QAVMGPEPSE bmy_10972T0/1-500 APKRLRCLEK EEEESHEENR PEHETLESLA SGGGASSIKN QPALGPKPSE BACU018055/1-650 APKRLRCLEK EEEESHEEKR PEHETLESLA SGGGASSIKN QPALGPKPSE 401 450 ENSP00000229769/1-536 DGSNLDDAKG LAESLELPKA IQDQLPRLQQ LLKTLEEGLE GLEDAPPVEL ENSTTRP00000008930/1-541 AGQSLEDAKG LPESLELPRA IQEQVPRLQQ LLKTLGKGLE GLEGTPPVEL ENSBTAP00000038717/1-540 AGQSLKDAKG LPESLELPKV IQDQVPRLQQ LLKTLGKGLE GLEGTPPVEL bmy_10972T0/1-500 AGQSLEDAKG LPESLELPRA IQEQVPRLQQ LLKTLGKGLE GLEGTPPVEL BACU018055/1-650 AGQSLEDAKS LPESLELPRA IQ-------- -------GLE GLEGTPPVEL 451 500 ENSP00000229769/1-536 QLLHECSPSQ MDLLCAQLQL PQLSDLGLLR LCTWLLALSP DLSLSNATVL ENSTTRP00000008930/1-541 QLLHECSPGQ VDLVCAQLQL PQLSDTGLLQ LCTWLLALSP DLSLSNATVL ENSBTAP00000038717/1-540 QLLQECSPGQ VDLLCAQLQL PQLLDTGLLQ LCTWLLALSP DLSLGNATVL bmy_10972T0/1-500 QLLHECSPGQ VDLVCAQLQL PQLSDTGLLQ LCTWLLALSP DLSLSNATVL BACU018055/1-650 QLLHECSPGQ VDLVCAQLQL PQLSDTGLLQ LCTWLLALSP DLSLSNATVL 501 550 ENSP00000229769/1-536 TRSLFLGRIL SLTSSASRLL TTALTSFCAK YTYPVCSALL DPVLQAPGTG ENSTTRP00000008930/1-541 TRSLFLGRIL SLTSSASRLL TTALTSFCTK YTYAVCRALL GPVLQAPGIG ENSBTAP00000038717/1-540 TRSLFLGRIV SLTSSASRLL TTALTSFCTK YPYAVCRALL GPVLQAPGIG bmy_10972T0/1-500 TRSLFLGRIL SLTSSASRLL TTALTSFCTK YTYAVCRALL GPVLQAAGTG BACU018055/1-650 TRSLFLGRIL SLTSSASRLL TTALTSFCTK YTYAVCRALL GPVLQAPGTG 551 600 ENSP00000229769/1-536 PAQTELLCCL VKMESLEPDA QVLMLGQILE LPWKEETFLV LQSLLERQVE ENSTTRP00000008930/1-541 PAQTELLCCL TKDEALEPDM QALMLGQILE LPWKEETFLV LQSLLERQVE ENSBTAP00000038717/1-540 PAQTELLCCL TKDKALEPDV QVLMLGQILE LPWKEETFLV LQSLLERQVE bmy_10972T0/1-500 PAQTELLCCL TKDEALEPDM QALMLGQILE LPWKEETFLV LQSLLERQ-- BACU018055/1-650 PAQTELLCCL TKDEALEPDM QALMLGQILE LPWKEETFLV LQSLLERQVE 601 650 ENSP00000229769/1-536 MTPEKFSVLM EKLCKKGLAA TTSMAYAKLM LTVMTKYQAN ITETQRLGLA ENSTTRP00000008930/1-541 MPSEKFSVLM EKLCKEGPAA TTSMAYAKLM LTVVTKYRAN ISEPQRLGLA ENSBTAP00000038717/1-540 MPPEKFSVLM EKLCKEGPVA TTSMAYAKLL LTVMTKYQAN ITEPQRLGLA bmy_10972T0/1-500 ---------- ---------- ---------- ---------- ISEPQRLGLA BACU018055/1-650 MPSEKFSVLM EKLCKEGPAA TTSMAYAKLM LTVITKYQAN ISEPQRLGLA 651 700 ENSP00000229769/1-536 MALEPNTTFL RKSLKAALKH LGP ENSTTRP00000008930/1-541 AVLELNTTFL KKSLQAALRQ LAP ENSBTAP00000038717/1-540 AAVELNTTFL RKSLQAALRH LTP bmy_10972T0/1-500 AALELNTTFL RKSLQAALRH LAP BACU018055/1-650 AALELNTTFL RKSLQAALRH LAP