KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:48:55 2014 Check: 00 .. Name: ENSTTRP00000006152/1-535 Len: 910 Check: 4332 Weight: 1.00 Name: bmy_09738T0/1-581 Len: 910 Check: 8264 Weight: 1.00 Name: BACU004773/1-461 Len: 910 Check: 2687 Weight: 1.00 Name: ENSP00000298622/1-844 Len: 910 Check: 6429 Weight: 1.00 Name: ENSBTAP00000038737/1-845 Len: 910 Check: 1889 Weight: 1.00 // 1 50 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- -----VSRVE bmy_09738T0/1-581 MSKKGAGGRS KGDKAEVLAA LQAANEELRA KLTDIQIELQ QEKSKVSRVE BACU004773/1-461 MSKKGAGGRS KGDKAEVLAA LQAANEELRA KLTDIQIELQ QEKSKVSRVE ENSP00000298622/1-844 MSKRGMSSRA KGDKAEALAA LQAANEDLRA KLTDIQIELQ QEKSKVSKVE ENSBTAP00000038737/1-845 MSKKGAGGRS KGDKAEVLAA LQAANEDLRA KLTEIQIELQ QEKSKVGRVE 51 100 ENSTTRP00000006152/1-535 REKSQELRQL REHEQHKSAV LLTELKTKLH EEKMKELQAL RETLLRQHEA bmy_09738T0/1-581 REKNQELRQV REHEQHKSAV LLTELKTKLH EEKMKELQAV REALLRQHEA BACU004773/1-461 REKNQELRQV REHEQHKSAV LLTELKSKLH EEKMKELQAV RETLLRQHEA ENSP00000298622/1-844 REKNQELRQV REHEQHKTAV LLTELKTKLH EEKMKELQAV RETLLRQHEA ENSBTAP00000038737/1-845 REKNQELRQA REHEQHKSAV LLTELRTKLH EEKMKELQAL REALLRQHEA 101 150 ENSTTRP00000006152/1-535 ELLRVAKVKD SENQRLRALL HALRDSAPDK VRAVLLSEAK EET-QGFEVE bmy_09738T0/1-581 ELLRVVKVKD GENQRLQALL HALRDSAPDK VRTVLLSEAK EEARKGFEVE BACU004773/1-461 ELLRVIKVKD GENQRLQALL HALRDGAPDK VRTVLLSEAK EEARKGFEVE ENSP00000298622/1-844 ELLRVIKIKD NENQRLQALL SALRDGGPEK VKTVLLSEAK EEAKKGFEVE ENSBTAP00000038737/1-845 ELLRVIRTKD SENQRLQALL HAVRDGGPDR ARTVLLSEAK EEAKKGFEVE 151 200 ENSTTRP00000006152/1-535 KVRMQQEISE LKGAKKQVEE ALTMVAQADK VKAAEIRSVY -LHQEEISRI bmy_09738T0/1-581 KVRLQQEISE LKGAKKQVEE ALTMVVQADK VKAAEIRSVY HLHQEEICRI BACU004773/1-461 KVRMQQEISE LKGAKRQVEE ALTMVVQADK VKAAEIRSVY HLHQEEICRI ENSP00000298622/1-844 KVKMQQEISE LKGAKRQVEE ALTLVIQADK IKAAEIRSVY HLHQEEITRI ENSBTAP00000038737/1-845 KVKMQQEISE LKGAKRQVEE ALTLVIRADK IKAAEIRSVY HLHQEEISRI 201 250 ENSTTRP00000006152/1-535 KKECEREIRR LMEEIKFKDR AVFVLERELG VQAGHAQRLQ LQKEALDEQL bmy_09738T0/1-581 KKECEREVRR L--------- ---------- ---------- ---------- BACU004773/1-461 KKECEREVRR LMEEIKFKDR AVFVLERELG VQAGHAQRLQ LQKEALDEQL ENSP00000298622/1-844 KKECEREIRR LMEEIKFKDR AVFVLERELG VQAGHAQRLQ LQKEALDEQL ENSBTAP00000038737/1-845 KKECEREIRR LMEEIKFKDR AVFVLERELG VQAGHAQRLQ LQKEALDEQL 251 300 ENSTTRP00000006152/1-535 SQVKETDRHP GSPRRELPHA SGAGDASDRS GSPEQQLDEK DARRFQLKIA bmy_09738T0/1-581 ---------- ---------- ---------- ---EQQLDEK DARRFQLKIA BACU004773/1-461 SQVKETDRHL GSPRRELPHA SGAGDASDHS GSPEQQLDEK DARRFQLKIA ENSP00000298622/1-844 SQVREADRHP GSPRRELPHA AGAGDASDHS GSPEQQLDEK DARRFQLKIA ENSBTAP00000038737/1-845 SQVKETDRHP GSPRRELPHA SGAGDASDHS GSPEQQLDEK DARRFQLKIA 301 350 ENSTTRP00000006152/1-535 ELSAIIRKLE DRNALLSEER NE-------- ----LLKRLR EAESQYKPLL bmy_09738T0/1-581 ELSAIIRKLE DRNALLSEER NELVRGSGAS GFCGLLKRLR EAESQYKPLL BACU004773/1-461 ELSAIIRKLE DRNALLSEER NE-------- ----LLKRLR EAESQYKPLL ENSP00000298622/1-844 ELSAIIRKLE DRNALLSEER NE-------- ----LLKRVR EAESQYKPLL ENSBTAP00000038737/1-845 ELSAIIRKLE DRNALLSEER NE-------- ----LLKRVR EAESQYKPLL 351 400 ENSTTRP00000006152/1-535 DRNRRLTRKN EDLSHTLRRM ENKLKFITQE NIEM------ ---------- bmy_09738T0/1-581 DRNKRLTRKN EDLSHTLRRM ENKLKFITQE NIEMSGPSAH MSRRVVWLVS BACU004773/1-461 DRNKRLTRKN EDLSHTLRRM ENKLKFITQE NIEM------ ---------- ENSP00000298622/1-844 DKNKRLSRKN EDLSHALRRM ENKLKFVTQE NIEM------ ---------- ENSBTAP00000038737/1-845 DKNKRLTRKN EDLSHSLRRM ENKLKFVTQE NIEM------ ---------- 401 450 ENSTTRP00000006152/1-535 -RQRAGILRR PSSLNDLDQS QDEREVDFLR LQILEQQHLI DELSKTLETA bmy_09738T0/1-581 QRQRAGILRR PSSLNDLDQS QDERDVDFLK LQILEQQHLI DELSKTLETA BACU004773/1-461 -RQRAGILRR PSSLNDLDQS QDERDVDFLK LQILEQQHLI DELSKTLETA ENSP00000298622/1-844 -RQRAGIIRR PSSLNDLDQS QDEREVDFLK LQIVEQQNLI DELSKTLETA ENSBTAP00000038737/1-845 -RQRAGIIRR PSSLNDLDQS QDERDVDFLK LQIVEQQHLI DELSKTLETA 451 500 ENSTTRP00000006152/1-535 GYVKSMLERD KLLRYRKQRK KMAKLP--PV VVETFFGYDE EASLESDGSS bmy_09738T0/1-581 GYVKSML--- ---------- ---------- ---------- ---------- BACU004773/1-461 GYVKSMLERD KLLRYRKQRK KMAKLP---- ---------- ---------- ENSP00000298622/1-844 GYVKSVLERD KLLRFRKQRK KMAKLP-KPV VVETFFGYDE EASLESDGSS ENSBTAP00000038737/1-845 GYVKSVLERD KLLRYRKQRK KMAKLPKKPV VVETFFGYDE EASLESDGSS 501 550 ENSTTRP00000006152/1-535 ISYQTDRTDQ TPCTPDDDLE EXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09738T0/1-581 ---------- ---------- ---------- ---------- ---------- BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 VSYQTDRTDQ TPCTPDDDLE EGMAKEETEL RFRQLTMEYQ ALQRAYALLQ ENSBTAP00000038737/1-845 ISYQTDRTDQ TPCTPDDDLE EGMAKEETEL RFRQLTMEYQ ALQRAYALLQ 551 600 ENSTTRP00000006152/1-535 XQVGGTLDAE REVKTREQLQ ADVQRAQTRI EDLEKALAEQ GQDTKWIEEK bmy_09738T0/1-581 ---------- ---------- ---------- ---------- --DTKWIEEK BACU004773/1-461 ---------- ---------- --------KV NKYMKRVFQK AT-------- ENSP00000298622/1-844 EQVGGTLDAE REVKTREQLQ AEVQRAQARI EDLEKALAEQ GQDMKWIEEK ENSBTAP00000038737/1-845 EQVGGTLDAE REVKTREQLQ ADAQRAQARI EDLQKALAEQ GQDMKWIEEK 601 650 ENSTTRP00000006152/1-535 QMLYRRNQEL VEK------- ---------- ---------- ---------- bmy_09738T0/1-581 QALYRRNQEL IEKIKQMETE EARLKHEVQD AKDQNELLEF RILELE---- BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 QALYRRNQEL VEKIKQMETE EARLRHEVQD ARDQNELLEF RILELEERER ENSBTAP00000038737/1-845 QALFRRNQEL VEKIKQMETE EARLKHEVQD AKDQNELLEF RILELEERER 651 700 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- ---------- bmy_09738T0/1-581 ---------- ---------- ---------- ---------- ---------- BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 KSPAISFHHT PFVDGKSPLQ VYCEAEGVTD IVVAELMKKL DILGDNANLT ENSBTAP00000038737/1-845 KSPAITFHHT PFVDGKSPLQ AYCEAEGVTD ILVSELMKKL DLLGDNANLT 701 750 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- ---------- bmy_09738T0/1-581 ---------- ---------- ---------- ---------- ---------- BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 NEEQVVVIQA RTVLTLAEKW LQQIEETEAA LQRKMVDLES EKELFSKQKG ENSBTAP00000038737/1-845 NEEQVVVIQA RTVLTLAEKW LQQIEETESA LQRKMVDLES EKELFSKQKG 751 800 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- ---------- bmy_09738T0/1-581 ---------- --------HI LELEAMLYDV LQQEAGAKVA DTLSEEEREK BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 YLDEELDYRK QALDQANKHI LELEAMLYDA LQQEAGAKVA ELLSEEEREK ENSBTAP00000038737/1-845 YLDEELDYRK QCLDQAHKRI LELEAMLYDA LQQEAGAKVA ELLSEEEREK 801 850 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- ---------- bmy_09738T0/1-581 LRVAVEQWKR QVMSEMRERD AQILRERMEL LQLAQQRIKE LEERIEAQKR BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 LKVAVEQWKR QVMSELRERD AQILRERMEL LQLAQQRIKE LEERIEAQKR ENSBTAP00000038737/1-845 LGVAVEQWKR QVMSELRERD AQILRERMEL LQLAQQRIKE LEERIEAQKR 851 900 ENSTTRP00000006152/1-535 ---------- ---------- ---------- ---------- ---------- bmy_09738T0/1-581 QIKELEEKPS EEPDRFPPAG PESSRCPSGR GRCRISFLKT QEALGSAYPL BACU004773/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000298622/1-844 QIKELEEK-- ---------- ---------- ------FLFL FLFFSLAFIL ENSBTAP00000038737/1-845 QIKELEEK-- ---------- ---------- ------FLFL FLFFSLAFIL 901 950 ENSTTRP00000006152/1-535 ---------- bmy_09738T0/1-581 PSRKREKGGL BACU004773/1-461 ---------- ENSP00000298622/1-844 WS-------- ENSBTAP00000038737/1-845 WS--------