KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:08 2014 Check: 00 .. Name: ENSTTRP00000014506/1-538 Len: 538 Check: 4991 Weight: 1.00 Name: bmy_20513T0/1-286 Len: 538 Check: 2173 Weight: 1.00 Name: ENSP00000431404/1-455 Len: 538 Check: 8466 Weight: 1.00 Name: BACU005030/1-409 Len: 538 Check: 206 Weight: 1.00 Name: ENSBTAP00000038812/1-414 Len: 538 Check: 5723 Weight: 1.00 // 1 50 ENSTTRP00000014506/1-538 LPHCSPRALF LQSILGDFAG PEQQLVSSVL GQGLRSRDPL PAAASQPSSR bmy_20513T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSP00000431404/1-455 MPDYRTRALF VQSTLGDSAG PELQLLSIVP GRDLQPSDSF TG-------- BACU005030/1-409 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038812/1-414 ---------- ---------- ---------- ---------- -G-------- 51 100 ENSTTRP00000014506/1-538 SELHHVRGGS QATTKPEGPR VGRLCPRRGI GARLSGASFP XXXXXXXXXX bmy_20513T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSP00000431404/1-455 ---------- ---------- ---------- ---------- ---------- BACU005030/1-409 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000038812/1-414 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000014506/1-538 XXXXXXXXXX XXXXXXXXXX XXXXXPIRKM PPSASAVDFF QLFVPDNVLK bmy_20513T0/1-286 ---------- ---------- ---------M PPSASAVDFF QLFVPDNVLK ENSP00000431404/1-455 ---------- ---------- -----PTRKM PPSASAVDFF QLFVPDNVLK BACU005030/1-409 ---------- ---------- ---------M PPSASAVDFF QLFVPDNVLK ENSBTAP00000038812/1-414 ---------- ---------- -----PTRKM PPSASAMDFF QLFVPDNVLK 151 200 ENSTTRP00000014506/1-538 NMVVQTNLYA KKFQERFGSD GAWVDVTLPE MKAFLGYVIS TSTSHCESVL bmy_20513T0/1-286 NMVVQTNLYA KKFQERFGSD GAWVDVTLPE MKAFLGYVIS TSTSHCESVL ENSP00000431404/1-455 NMVVQTNMYA KKFQERFGSD GAWVEVTLTE MKAFLGYMIS TSISHCESVL BACU005030/1-409 NMVVQTNLYA KKFQERFGSD GAWVDVTLPE MKAVLGYVIS TSTSHCESVL ENSBTAP00000038812/1-414 NMVVQTNLYA KKFQERFGSD GAWVDVTLPE MKAFLGYVIS TSTSHCESVL 201 250 ENSTTRP00000014506/1-538 SIWSGGFYSN RSLALVMSQA RFEKILKYFH VVAFRSSQTT HGLYKVQPFL bmy_20513T0/1-286 SIWSGGFYSN RSLALVMSQA RFEKILKYFH VVAFRSSQTT HGLYKVQPFL ENSP00000431404/1-455 SIWSGGFYSN RSLALVMSQA RFEKILKYFH VVAFRSSQTT HGLYKVQPFL BACU005030/1-409 SIWSGGFYSN RSLALVMSQA RFEKILKYFH VVAFRSSQTT HGLYKVQPFL ENSBTAP00000038812/1-414 SIWSGGFYSN RRLALVMSQA RFEKILKYFH VVAFRSSQTT HGLYKVQPFL 251 300 ENSTTRP00000014506/1-538 DSLQNGFDAA FRPSQTQVLH EPLIDEDPVF IATCTERELR KRKKRKFSLW bmy_20513T0/1-286 DSLQNGFDSA FRPSQT---- ---------- ---------- ---------- ENSP00000431404/1-455 DSLQNSFDSA FRPSQTQVLH EPLIDEDPVF IATCTERELR KRKKRKFSLW BACU005030/1-409 DSLQNGFDSA FRPSQTQVLH EPLIDEDPVF IATCTERELR KRKKRKFSLW ENSBTAP00000038812/1-414 DSLQSGFDSA FRPSQTQVLH EPLIDEDPVF IATCTERELR KRKKRKFSLW 301 350 ENSTTRP00000014506/1-538 VRQCSSTGFI IQIYVHLKEG GGPDGLDALK NKPQLHSMVA RSLCRTAAGK bmy_20513T0/1-286 ---------- -QIYVHLKEG GGPDGLDALK NKPQLHSTVA RSLCRTAAGK ENSP00000431404/1-455 VRQCSSTGFI IQIYVHLKEG GGPDGLDALK NKPQLHSMVA RSLCRNAAGK BACU005030/1-409 VRQCSSTGFI IQIYVHLKEG GGPDGLDALK NKPQLHSMVA RSLCRTAAGK ENSBTAP00000038812/1-414 VRQCSSTGFI IQIYVHLKEG SGPDGLDALK NKPQLHSMVA RSLCRNAAGK 351 400 ENSTTRP00000014506/1-538 NYIIFTGPSI TSLTLFEEFE KQGIYCCGLL SPRKSDCTGL PPSMLNSPAL bmy_20513T0/1-286 NYIIFTGPSI TSLTLFEEFE KQGIYCCGLL SSRKSDCTGL PPSMLSSPAL ENSP00000431404/1-455 NYIIFTGPSI TSLTLFEEFE KQGIYCCGLL RARKSDCTGL PLSMLTNPAT BACU005030/1-409 NYIIFTGPSI TSLTLFEEFE KQGIYCCGLL SSRKSDCTGL PPSMLSSPAL ENSBTAP00000038812/1-414 NYIIFTGPSI TSLTLFEEFE KQGIYCCGLL SSRKSDCTGL PPSMLSSPAT 401 450 ENSTTRP00000014506/1-538 PPARGQHSIR TKGSMSLICW YNKGHFRFLT NAYSPVQQGV IIKRRSGEIP bmy_20513T0/1-286 PPARGQHSIR MKGSMSLICW YNKGHFRFLT NAYSPVQQG- ---------- ENSP00000431404/1-455 PPARGQYQIK MKGNMSLICW YNKGHFRFLT NAYSPVQQGV IIKRKSGEIP BACU005030/1-409 PPARGQHSIR VKGSMSLICW YNKGHFRFLT NAYSPVQQGV IIKRRSGEIP ENSBTAP00000038812/1-414 PPARGQHSIR MKGSMSLICW YNKGHFRFLT NAYSPVQQGV IIKRRSGEIP 451 500 ENSTTRP00000014506/1-538 CPLAVEAFAA HLSYICKYDD KYSXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20513T0/1-286 ---------- ---------- ---------- ---------- ---------- ENSP00000431404/1-455 CPLAVEAFAA HLSYICRYDD KYSKYFISHK PNKTWQQVFW FAISIAINNA BACU005030/1-409 CPLAVEAFAA HLSYICKYDD KYSKYFISHK PNKTWQQVFW FAVSVAINNA ENSBTAP00000038812/1-414 CPLAVEAFAA HLSYICKYDD KYSKYFISHK PNKTWQQVFW FAVSIAVNNA 501 550 ENSTTRP00000014506/1-538 XXXXXXXXXX XXXXXXXXXX XXXLVRELLG LEDTSPSL bmy_20513T0/1-286 ---------- -----ESKDF ENR--KEELN FFSTEKKN ENSP00000431404/1-455 YILYKMSDAY HVKRYSRAQF GERLVRELLG LEDASPTH BACU005030/1-409 YILYKMSEAY HVKRYSRAQF GERLVRELLG LEDTSPCL ENSBTAP00000038812/1-414 YILYKMSDAY HVKRYSRAQF GERLVQELLG LEDTSPSL