KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
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NoName MSF: 5 Type: P Thu May 15 17:49:14 2014 Check: 00 ..
Name: ENSP00000388910/1-964 Len: 1021 Check: 7097 Weight: 1.00
Name: bmy_16954T0/1-902 Len: 1021 Check: 5739 Weight: 1.00
Name: BACU008680/1-927 Len: 1021 Check: 7962 Weight: 1.00
Name: ENSBTAP00000038958/1-704 Len: 1021 Check: 1224 Weight: 1.00
Name: ENSTTRP00000008192/1-746 Len: 1021 Check: 7705 Weight: 1.00
//
1 50
ENSP00000388910/1-964 MITTLPSLLP ASLASISHRV TNLPSNSLSH NPGLSKPDFP GNSSPGLPSS
bmy_16954T0/1-902 ---------- ---------- ---------- ---------- ----------
BACU008680/1-927 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000038958/1-704 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008192/1-746 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000388910/1-964 SSPGRDLGAP AGSMGAASCE DEELEFKLVF GEEKEAPPLG AGGLGEELDS
bmy_16954T0/1-902 ---------- ---MGAASCE DEELEFKLVF GEEKEAPPLG AGGSGEELDS
BACU008680/1-927 ---------- ---MGAASCE DEELEFKLVF GEEKEAPPLG AGGSGEELDS
ENSBTAP00000038958/1-704 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008192/1-746 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000388910/1-964 EDAPPCCRLA LGEPPPYGAA PIGIPRPPPP RPGMHSPPPR PAPSPGTWES
bmy_16954T0/1-902 EDTPPCCRLG LGDPPPYGAA PIGIPRPPPP RPGMHSPPPR PAPSPGTWES
BACU008680/1-927 EDTPPCCRLG LGEPPPYGAA PIGIPRPPPP RPGMLSPPPR PAPSPGTWES
ENSBTAP00000038958/1-704 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008192/1-746 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000388910/1-964 QPARSVRLGG PGGGAGGAGG GRVLECPSIR ITSISPTPEP PAALEDNPDA
bmy_16954T0/1-902 QPAR------ ---------- --------IR ITSISPTPDP PAALEDNPDA
BACU008680/1-927 QPARSVRLGG PGGGSGGAGG GRVLECPSIR ITSISPTPDP PAALEDNPDA
ENSBTAP00000038958/1-704 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008192/1-746 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000388910/1-964 WGDGSPRDYP PPEGFGGYRE AGGQGGGAFF SPSPGSSSLS SWSFFSDASD
bmy_16954T0/1-902 WGEGSPRDYP PPEGFGGYRE AGGQGGGPFF SPSPGSSSLS SWSFFSDASD
BACU008680/1-927 WGEGSPRDYP PPEGFGGYRE AGGLGGGPFF SPSPGSSSLS SWSFFSDASD
ENSBTAP00000038958/1-704 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000008192/1-746 ---------- --EGFGGYRG GGGQGGG-FI SPS-GSSSLS SWSFFSDASD
251 300
ENSP00000388910/1-964 EAALYAACDE VESELNEAAS RFGLGSPLPS PRASPRPWTP EDPWSLYGPS
bmy_16954T0/1-902 EAALYAACDE VESELNEAAS RFGLGSPLPS PRASPRPWTP DDPWSLYGPS
BACU008680/1-927 EAALYAACDE VESELNEAAS RFGLGSPLPS PRASPRPWTP DDPWSLYGPS
ENSBTAP00000038958/1-704 ---------- VESELNEAAS RFGLGSPLPS PRASPRPWTP DDPWSLYGPS
ENSTTRP00000008192/1-746 EA--YAACDE VESELNEAAS R-GLGSPLPS PRASPRPWTP DDPWSLYGPS
301 350
ENSP00000388910/1-964 PGGRGPEDSW LLLSAPGPTP ASPRPASPCG KRRYSSSGTP SSASPALSRR
bmy_16954T0/1-902 PGGRGPEDSW LLLSAPGPTP ASPRPASPCG KRRYSSSGTP SSASPALSRR
BACU008680/1-927 PGGRGPEDSW LLLSAPGPTP ASPRPASPCG KRRYSSSGTP SSASPALSRR
ENSBTAP00000038958/1-704 PGGRGPEDSW LLLSAPGPTP ASPRPASPCG KRRYSSSGTP SSASPALSRR
ENSTTRP00000008192/1-746 PGGRGPEDSW LLLSAPGPTP ASPRPASPCG KRRYSSSGTP SSASPALSRR
351 400
ENSP00000388910/1-964 GSLGEEGSEP PPPPPLPLAR DPGSPGPFDY VGAPPAESIP QKTRRTSSEQ
bmy_16954T0/1-902 GSLGEEGPEP PPPPPLPLVR DPGSPGPFDY AGAPPAESIP QKTRRTSSEQ
BACU008680/1-927 GSLGEEGPEP PPPPPLPLVR DPGSPGPFDY AGAPPAESIP QKTRRTSSEQ
ENSBTAP00000038958/1-704 GSLGEEGPEP PPPPPLPLVR DPGSPGPFDY VGAPSAESIP QKTRRTSSEQ
ENSTTRP00000008192/1-746 GSLGEEGPEP PPAPPLPLVR DPGSPGPFDY TGAPPAESIP QKTRRTSSEQ
401 450
ENSP00000388910/1-964 AVALPRSEEP ASCNGKLPLG AEESVAPPGG SRKEVAGMDY LAVPSPLAWS
bmy_16954T0/1-902 AVALPRSEEP APCNGKLPSG VEEAGAPPGG PRKEVAGMDY LAVPSPLAWS
BACU008680/1-927 AVALPRSEEP APCNGKLPSG VEEAGAPPGG PRKEVAGMDY LAVPSPLAWS
ENSBTAP00000038958/1-704 AVALPRSEEP APCNGKLPSG AEEAGAPPGG PRKEAAGMDY LAVPSPLAWS
ENSTTRP00000008192/1-746 AVALPRSEEP APCNGKLPSG VEEAGAPPGG PRKEVAGMDY LAVPSPLAWS
451 500
ENSP00000388910/1-964 KARIGGHSPI FRTSALPPLD WPLPSQYEQL ELRIEVQPRA HHRAHYETEG
bmy_16954T0/1-902 KARIGGHSPI FRTSALPPLD WPLPSQYEQL ELRIEVQPRA HHRAHYETEG
BACU008680/1-927 KARIGGHSPI FRTSALPPLD WPLPSQYEQL ELRIEVQPRA HHRAHYETEG
ENSBTAP00000038958/1-704 KARIGGHSPI FRTSALPPLD WPLPSQYEQL ELRIEVQPRA HHRAHYETEG
ENSTTRP00000008192/1-746 KARTGGHSPI FRTSALPPLD WPLPSQYEQL ELRIEVQPRA HHRAHYETEG
501 550
ENSP00000388910/1-964 SRGAVKAAPG GHPVVK---- ---------- ---------- ---LLGYSEK
bmy_16954T0/1-902 SRGAVKAAPG GHPIVK---- ---------- ---------- ---LLGYSEK
BACU008680/1-927 SRGAVKAAPG GHPIVKGWTE NLGMDEGWDS GDFNWVAFAS LCQLLGYSEK
ENSBTAP00000038958/1-704 SRGAVKAAPG GHPVVK---- ---------- ---------- ---LLGYSEK
ENSTTRP00000008192/1-746 SRGAVKAAPG GHPIVK---- ---------- ---------- ---LLGYSEK
551 600
ENSP00000388910/1-964 PLTLQMFIGT ADERNLRPHA FYQVHRITGK MVATASYEAV VSGTKVLEMT
bmy_16954T0/1-902 PLTLQMFIGT ADERNLRPHA FYQVHRITGK MVATASYEAV VSGTKVLEMT
BACU008680/1-927 PLTLQMFIGT ADERNLRPHA FYQVHRITGK MVATASYEAV VSGTKVLEMT
ENSBTAP00000038958/1-704 PLTLQMFIGT ADERNLRPHA FYQVHRITGK MVATASYEAV VSGTKVLEMT
ENSTTRP00000008192/1-746 PLTLQMFIGT ADERNLRPHA FYQVHRITGK MVATASYEAV VSGTKVLEMT
601 650
ENSP00000388910/1-964 LLPENNMAAN IDCAGILKLR NSDIELRKGE TDIGRKNTRV RLVFRVHVPQ
bmy_16954T0/1-902 LLPENNMAAN IDCAGILKLR NSDIELRKGE TDIGRKNTRV RLVFRVHVPQ
BACU008680/1-927 LLPENNMAAN IDCAGILKLR NSDIELRKGE TDIGRKNTRV RLVFRVHVPQ
ENSBTAP00000038958/1-704 LLPENNMAAN IDCAGILKLR NSDIELRKGE TDIGRKNTRV RLVFRVHVPQ
ENSTTRP00000008192/1-746 LLPENNMAAN IDCAGILKLR NSDIELRKGE TDIGRKNTRV RLVFRVHVPQ
651 700
ENSP00000388910/1-964 GGGKVVSVQA ASVPIECSQR SAQELPQVEA YSPSACSVRG GEELVLTGSN
bmy_16954T0/1-902 GSGKVISVQT ASVPIECSQR SAQELPQVEA YSPSACSVTG GEELVLTGSN
BACU008680/1-927 GSGKVISVQT ASVPIECSQR SAQELPQVEA YSPSACSVTG GEELVLTGSN
ENSBTAP00000038958/1-704 GSGKVVSVQT ASVPIECSQR SAQELPQVEA YSPSACSVRG GEELVLTGSN
ENSTTRP00000008192/1-746 GSGKVISVQT ASVPIECSQR SA-ELPQVEA YSPSACSVTG GEELVLTGSN
701 750
ENSP00000388910/1-964 FLPDSKVVFI ERGPDGKLQW EEEATVNRLQ SNEVTLTLTV PEYSNKRVSR
bmy_16954T0/1-902 FLPDSKVVFI ERGPDGKLQW EEEAAVNRSQ SNEVTLTLTI PEYSNKRVSR
BACU008680/1-927 FLPDSKVVFI ERGPDGKLQW EEEATVNRSQ SNEVTLTLTI PEYSNKRVSR
ENSBTAP00000038958/1-704 FLPDSKVVFI ERGPDGKLQW EEEATVNRLQ SNEVTLTLAV PEYSNKRVSR
ENSTTRP00000008192/1-746 FLPDSKVVFI ERGPDGKLQW EEEATVNRLQ SNEVTLTLTI PEYSNKRVSR
751 800
ENSP00000388910/1-964 PVQVYFYVSN GRRKRSPTQS FRFLP----- ---------- ----------
bmy_16954T0/1-902 PVQVYFYVSN GRRKRSPTQS FKFLPGALWN SPWWGMRMWG PLQGHRDAVP
BACU008680/1-927 PVQVYFYVSN GRRKRSPTQS FKFLP----- ---------- ----------
ENSBTAP00000038958/1-704 PVQVYFYVSN GRRKRSPTQS FKFLP----- ---------- ----------
ENSTTRP00000008192/1-746 PVQVYFYVSN GRRKRSPTQS FKFLP----- ---------- ----------
801 850
ENSP00000388910/1-964 -VICKEEPLP DSSLRGFPSA SATPFGTDMD FSPPRPPYPS YPHEDPACET
bmy_16954T0/1-902 HVIFKEEPLP DASLRGFPSA SGPHFGSDMD FSPPRPPYPS YPHEDPAYET
BACU008680/1-927 -VIFKEEPLP DASLRGFPSA SGPHFGSDMD FSPPRPPYPS YPHEDPAYET
ENSBTAP00000038958/1-704 -VIFKEEPLP DASLRGFPSA SGPPFGSDMD FSPPRPPYPS YPHEDPAYET
ENSTTRP00000008192/1-746 -VIFKEEPLP DASLRGFPSA SGPHFGSDMD FSPPRPPYPS YPHEDPAYET
851 900
ENSP00000388910/1-964 PYLSEGFGYG MPPLYPQTGP PPSYRPGLRM FPETRGTTGC AQPPAVSFLP
bmy_16954T0/1-902 PYLSEGFSYG TPPLYPQTGP PPSYRPGPRM FPETGGTTGC ARPPPVSFLP
BACU008680/1-927 PYLSEGFSYG TPPLYPQTGP PPSYRPGPRM FPETGGTTGC ARPPPVSFLP
ENSBTAP00000038958/1-704 PYLSEGFSYG TPPLYPQTGP PPSYRPGLRM FPETGGATGC ARPPPVSLLP
ENSTTRP00000008192/1-746 PYLSEGFSYG TPPLYPQTGP PPSYRPGPRM FPETGGTTGC ARPPPVSFLP
901 950
ENSP00000388910/1-964 RPFPSDPYGG RGSSFSLGLP FSPPAPFRPP PLPASPPLEG PFPSQSDVHP
bmy_16954T0/1-902 RPFPSDPYGG RGSPFPLGLP FPPPAPFR-P PLPSSPPLEG PFTPQSSVHP
BACU008680/1-927 RPFPSDPYGG RGSPFPLGLP FPPPAPFR-P PLPSSPPLEG PFAPQSSVHP
ENSBTAP00000038958/1-704 RPFPSDPYGG RGSPFPLGLQ FPPPSPFR-P PMPSSPPLEG PFPPQGSVHP
ENSTTRP00000008192/1-746 RPFPSDPYGG RGSPFPLGLP FPPPAPFR-P PLPASPPLEG PFAPQSSVHP
951 1000
ENSP00000388910/1-964 LPAEGYNKVG PGYGPGEGAP EQEKSRGGYS SGFRDSVPIQ GITLEEG---
bmy_16954T0/1-902 PPAEGYNEVG PSYGPGEGAP EQEKSRGGYG SGFRDSVPIQ GITLEEG---
BACU008680/1-927 PPAEGYNEVG PSYGPGEGAP EQEKSRGGYG SGFRDSVPIQ GITLEEG---
ENSBTAP00000038958/1-704 PPAEGYSEVG PSYGPGEGAP EQEKSRGGYG SGFRDSVPIQ GITLEEVSEI
ENSTTRP00000008192/1-746 PPAEGYSEVG PSYGPGEGAP EQEKSRGGYG GSFRDSVPIQ GITLEEVSEI
1001 1050
ENSP00000388910/1-964 -GCGTGGCEC ECVQEIALHV C
bmy_16954T0/1-902 -GCGTRGCEC ECVQEIALHA C
BACU008680/1-927 -GCGTRRCEC ECVQEIALHV C
ENSBTAP00000038958/1-704 IGRDLSGFPA PPGEEPPA-- -
ENSTTRP00000008192/1-746 IGRDLSGFPA PPGEEPPA-- -