KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:17 2014 Check: 00 .. Name: ENSTTRP00000012163/1-1039 Len: 1215 Check: 2807 Weight: 1.00 Name: ENSBTAP00000038997/1-1089 Len: 1215 Check: 2921 Weight: 1.00 Name: ENSP00000264930/1-1083 Len: 1215 Check: 5974 Weight: 1.00 Name: bmy_05111T0/1-1101 Len: 1215 Check: 4493 Weight: 1.00 // 1 50 ENSTTRP00000012163/1-1039 ---------- ---------- ---------- ---------- --DGNPGENS ENSBTAP00000038997/1-1089 ---------- ---------- ---------- ---HLTAPRP AGDGHPRESS ENSP00000264930/1-1083 MPTNFTVVPV EAHADGGGDE TAERTEAPGT PEGPEPERPS PGDGNPRENS bmy_05111T0/1-1101 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012163/1-1039 PFIGSMDVDG ERAFERKSMA LFEEEMDSNP MVSSLLNKLA NYTNLSQGVV ENSBTAP00000038997/1-1089 PFISHGEADT ESVYEGKNMA LFEEEMDSNP MVSSLLNKLA NYTNLSQGVV ENSP00000264930/1-1083 PFLNNVEVEQ ESFFEGKNMA LFEEEMDSNP MVSSLLNKLA NYTNLSQGVV bmy_05111T0/1-1101 ---------- ---------- -----MDSNP MVSSLLNKLA NYTNLSQGAA 101 150 ENSTTRP00000012163/1-1039 EHEEAEDSRR RQAKSPRMGT LIGVYLPCLQ NILGVILFLR LTWIVGAAGV ENSBTAP00000038997/1-1089 EHEEAEDSRR RQAKSPGMGT FIGVYLPCLQ NILGVILFLR LTWIVGAAGV ENSP00000264930/1-1083 EHEEDEESRR REAKAPRMGT FIGVYLPCLQ NILGVILFLR LTWIVGVAGV bmy_05111T0/1-1101 EHEEAEDSRR RQAKSPRMGT FIGVYLPCLQ NILGVILFLR LTWIVGAAGV 151 200 ENSTTRP00000012163/1-1039 LESFLIVSMC CTCTMLTAIS MSAIATNGMV PAGGSYYMIS RSLGPEFGGA ENSBTAP00000038997/1-1089 LESFLIVSMC CTCTMLTAIS MSAIATNGVV PGGGAPSVVV SALGPDPGGA ENSP00000264930/1-1083 LESFLIVAMC CTCTMLTAIS MSAIATNGVV PAGGSYYMIS RSLGPEFGGA bmy_05111T0/1-1101 LESFLIVSVC CTCTMLTAIS MSAIATNGVV PAGGSYYMIS RSLGPEFGGA 201 250 ENSTTRP00000012163/1-1039 VGLCFYLGTT FAGAMYILGT IEIFLTYISP SAAIVRAEGA GGEATALLHN ENSBTAP00000038997/1-1089 VGLCFYLGTT FAGAMYILGT IEIFLTYISP GAAIVHPEGA GGEAAALLHN ENSP00000264930/1-1083 VGLCFYLGTT FAGAMYILGT IEIFLTYISP GAAIFQAEAA GGEAAAMLHN bmy_05111T0/1-1101 VGLCFYLGTT FAGAMYILGT IEIFLTYISP SAAIVQAEGA GGEATALLHN 251 300 ENSTTRP00000012163/1-1039 MRVYGTCTLA LMATVVFVGV KYVNKLALVF LACVVLSILA IYAGVIKIAF ENSBTAP00000038997/1-1089 MRVYGTCTLA LMATVVFVGV KYVNKLALVF LACVVLSILA IYAGVIKTAF ENSP00000264930/1-1083 MRVYGTCTLV LMALVVFVGV KYVNKLALVF LACVVLSILA IYAGVIKSAF bmy_05111T0/1-1101 MRVYGTCTLA LMVMVVFVGV KYVNKLALVF LACVVLSILA IYAGVIKTAF 301 350 ENSTTRP00000012163/1-1039 DPPDIP---- ---------- ---------- ---------- ---------- ENSBTAP00000038997/1-1089 DPPDIP---- ---------- ---------- ---------- ---------- ENSP00000264930/1-1083 DPPDIP---- ---------- ---------- ---------- ---------- bmy_05111T0/1-1101 DPPDIPRPHS GQVEGERVTV LSWPCCLQGQ DGPGDIQQRR APPGCGPVLM 351 400 ENSTTRP00000012163/1-1039 ---------- ---VCLLGNR TLSRRSFDVC AKVHATSNGS VTTALWGLFC ENSBTAP00000038997/1-1089 ---------- ---VCLLGNR TLSRRGFDVC AKVHTANNSS VTTALWSIFC ENSP00000264930/1-1083 ---------- ---VCLLGNR TLSRRSFDAC VKAYGIHNNS ATSALWGLFC bmy_05111T0/1-1101 EAPEQGLLLS PFGICLLGNR TLSRRSFDIC AKVHATNNGS AATALWGLFC 401 450 ENSTTRP00000012163/1-1039 NGSTASISCD QYFAQNNVTE VQGIPGVVSG VLLDNLWSAY AEKGVFVEKK ENSBTAP00000038997/1-1089 NGSADSTSCD QYFLHNNVTE IQGIPGVASG VLLDNLWSMY ADKGAFVEKK ENSP00000264930/1-1083 NGSQPSAACD EYFIQNNVTE IQGIPGAASG VFLENLWSTY AHAGAFVEKK bmy_05111T0/1-1101 NGSTASISCD PYFVQNNVTE IQGIPGVVSG ALLDNLWSAY ADKGVFVEKK 451 500 ENSTTRP00000012163/1-1039 GVPSVPVPEE SRAGGLPYVL TDITTYFTML VGIYFPSVTG IMAGSNRSGD ENSBTAP00000038997/1-1089 GVPSVAVPEE ARARGLPYVL TDIMTYFTML VGIYFPSVTG IMAGSNRSGD ENSP00000264930/1-1083 GVPSVPVAEE SRASALPYVL TDIAASFTLL VGIYFPSVTG IMAGSNRSGD bmy_05111T0/1-1101 GVPSVPVPEE SRAGGLPYVL TDIMTYFTML VGIYFPSVTG IMAGSNRSGD 501 550 ENSTTRP00000012163/1-1039 LKDAQKSIPT GTILAIVTTS FIY------- ---------- ---------- ENSBTAP00000038997/1-1089 LRDAQKSIPT GTILAIVTTS FIY------- ---------- ---------- ENSP00000264930/1-1083 LKDAQKSIPT GTILAIVTTS FIY------- ---------- ---------- bmy_05111T0/1-1101 LKDAQKSIPT GTILAIVTTS FISRTRHGAQ GGVGRVWGRS RVGFSYCIMP 551 600 ENSTTRP00000012163/1-1039 ---------L SCIVLFGACI EGVILRDKFG EALQGNLVIG MLAWPSPWVI ENSBTAP00000038997/1-1089 ---------L SCIVLFGACI EGVILRDKFG EALQGNLVIG MLAWPSPWVI ENSP00000264930/1-1083 ---------L SCIVLFGACI EGVVLRDKFG EALQGNLVIG MLAWPSPWVI bmy_05111T0/1-1101 TVSLTQAADL SCIVLFGACI EGVILRDKFG EALQGKLVIG MLAWPSPWVI 601 650 ENSTTRP00000012163/1-1039 VIGSFFSTCG AGLQSLTGAP RLLQAIARDG IIPFLQVFGH GKANGEPTWA ENSBTAP00000038997/1-1089 VIGSFFSTCG AGLQSLTGAP RLLQAIARDS IVPFLQVSAP PSLGGPPGSG ENSP00000264930/1-1083 VIGSFFSTCG AGLQSLTGAP RLLQAIARDG IVPFLQVFGH GKANGEPTWA bmy_05111T0/1-1101 VIGSFFSTCG AGLQSLTGAP RLLQAIARDG IIPFLQVFGH GKANGEPTWA 651 700 ENSTTRP00000012163/1-1039 LLLTALICET GILIASLDSV APILSXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 PALTGVVATA GRTSGTRPSC CRSCPRFFLM CYMFVNLACA LQTLLRTPSW ENSP00000264930/1-1083 LLLTVLICET GILIASLDSV APILSMFFLM CYLFVNLACA VQTLLRTPNW bmy_05111T0/1-1101 LLLTALICET GILIASLDSV APILSMFFLM CYMFVNLACA LQTLLHTPNW 701 750 ENSTTRP00000012163/1-1039 XXXXXXXXXT LSFLGMSLCF ALMFICSWYY ALCAMLIAGC IYKYIEYRGA ENSBTAP00000038997/1-1089 RPRFKYYHWT LSFLGMSLCF ALMFVCSWYY ALCAMLIAGC IYKYIEYRGA ENSP00000264930/1-1083 RPRFKFYHWT LSFLGMSLCL ALMFICSWYY ALSAMLIAGC IYKYIEYRGA bmy_05111T0/1-1101 RPRFKYYHWT LSFLGMSLCF ALMFICSWYY ALCAMLIAGC IYKYIEYRGA 751 800 ENSTTRP00000012163/1-1039 EKEWGDGIRG LSLNAARYAL LHVEHGPLHT KNWXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 EKEWGDGIRG LSLNAARYAL LHVEHGPLHT KNWRPQKLVL LNLDAEQRVK ENSP00000264930/1-1083 EKEWGDGIRG LSLNAARYAL LRVEHGPPHT KNWRPQVLVM LNLDAEQAVK bmy_05111T0/1-1101 EKEWGDGIRG LSLNAARYAL LHVEHGPLHT KNWRPQVLVM LNLDAEQHVK 801 850 ENSTTRP00000012163/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 HPRLLSFTSQ LKAGKGLTIV GSVLEGTFLD KHVEAQQAEE NIRALMSAEK ENSP00000264930/1-1083 HPRLLSFTSQ LKAGKGLTIV GSVLEGTYLD KHMEAQRAEE NIRSLMSTEK bmy_05111T0/1-1101 HPRLLSFTSQ LKAGKGLTIV GSVLEGTFLD KHVEARRAEE NIRALMGTEK 851 900 ENSTTRP00000012163/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 TKGFCQLVVS SSLRDGTSHL IQSAGLGAMK HNTVLVGWPG AWKREDNPCS ENSP00000264930/1-1083 TKGFCQLVVS SSLRDGMSHL IQSAGLGGLK HNTVLMAWPA SWKQEDNPFS bmy_05111T0/1-1101 AKGFCQLVVS SSLRDGMSHL IQSAGLGGMK HNTVLMAWPE AWKREDGPFS 901 950 ENSTTRP00000012163/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 WRNFVDTVRD TTAAQQALLV AKNVDLFPHN QQRLSGGHID VWWIVHDGGL ENSP00000264930/1-1083 WKNFVDTVRD TTAAHQALLV AKNVDSFPQN QERFGGGHID VWWIVHDGGM bmy_05111T0/1-1101 WKNFVDTVRD TTAAQQALLV AKNVDLFPPN QERFSDGYID VWWIVHDGGL 951 1000 ENSTTRP00000012163/1-1039 XXXXXXXXXX XXVWRRCQMR IFTVAQVHDN SIQMKKDLQT FLYHLRISAE ENSBTAP00000038997/1-1089 LMLLPFLLRQ HKVWRRCQMR IFTVAQVDDN SIQMKKDLQT FLYHLRISAE ENSP00000264930/1-1083 LMLLPFLLRQ HKVWRKCRMR IFTVAQVDDN SIQMKKDLQM FLYHLRISAE bmy_05111T0/1-1101 LMLLPFLLRQ HKVWRRCQMR IFTVAQVHDN SIQMKKDLQT FLYHLRISAE 1001 1050 ENSTTRP00000012163/1-1039 VEVVEMVEND ISAFTYERTL VMEQRSQMLK QMQLSKTEQE R--------- ENSBTAP00000038997/1-1089 VEVVEMVESD ISAFTYERTL MMEQRSQMLK QMQLSKTERE REVSGRVGSR ENSP00000264930/1-1083 VEVVEMVEND ISAFTYERTL MMEQRSQMLK QMQLSKNEQE R--------- bmy_05111T0/1-1101 VEVVEMVEND ISAFTYERTL VMEQRSQMLK QMQLSKTEQE R--------- 1051 1100 ENSTTRP00000012163/1-1039 ---------- ---------- -----EAQLI -DRNTTSHSA VAARTQAPCA ENSBTAP00000038997/1-1089 PGGRRSPGPA PRSRELRVPA IARAGEAQLI HDRNTASHSA MAARAQAPST ENSP00000264930/1-1083 ---------- ---------- -----EAQLI HDRNTASHTA AAARTQAPPT bmy_05111T0/1-1101 ---------- ---------- -----EAQLI HDRNTISHSA MAARTQAPST 1101 1150 ENSTTRP00000012163/1-1039 LDKVQMTWTK EKLVAEKYRN KDTGVSGFKD LFSLKPX--- --XXXXXXXX ENSBTAP00000038997/1-1089 PDRVQMTWTK EKLVAEKHRN KDATVSGIKD LFNLKPEWGN LNQSNVRRMH ENSP00000264930/1-1083 PDKVQMTWTR EKLIAEKYRS RDTSLSGFKD LFSMKPD--- --QSNVRRMH bmy_05111T0/1-1101 LDKVQMTWTK EKLVAEKHRN KDASVSGFKD LFSLKPD--- --QSNVRRMH 1151 1200 ENSTTRP00000012163/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000038997/1-1089 TAVRLNGVVL DKSQDAQLVL LNMPGPPKNR QGDENYMEFL EVLTEGLNRV ENSP00000264930/1-1083 TAVKLNGVVL NKSQDAQLVL LNMPGPPKNR QGDENYMEFL EVLTEGLNRV bmy_05111T0/1-1101 TAVKLNGVVL DKSQDAQLVL LNMPGPPKNR QGDENYMEFL EVLTEGLNRV 1201 1250 ENSTTRP00000012163/1-1039 XLVRS-GREV VTIYS ENSBTAP00000038997/1-1089 LLVRGSGREV VTIYS ENSP00000264930/1-1083 LLVRGGGREV ITIYS bmy_05111T0/1-1101 LLVRGSGREV VTIYS