KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:18 2014 Check: 00 .. Name: ENSP00000361562/1-498 Len: 528 Check: 7832 Weight: 1.00 Name: ENSBTAP00000039003/1-479 Len: 528 Check: 4968 Weight: 1.00 Name: ENSTTRP00000015168/1-494 Len: 528 Check: 3685 Weight: 1.00 Name: bmy_06255T0/1-522 Len: 528 Check: 2771 Weight: 1.00 Name: BACU011375/1-458 Len: 528 Check: 5859 Weight: 1.00 // 1 50 ENSP00000361562/1-498 MTSSPRAPPG EQGRGGAEMI RAA--PPPLF LLLLLLLLLV SWASRGEAAP ENSBTAP00000039003/1-479 ---------- --------MF RAALWPPVLL LLQLLLL--- ACAPGGEGAH ENSTTRP00000015168/1-494 MTSRRGPPPG EQGRGAAEMV RAALSPP--F LL-LLLL--- SWAPRSEAAP bmy_06255T0/1-522 MTSRRGPPPG EQGREGAEMV RAALSPP--F LLPLLLL--- SWAPRSEAAP BACU011375/1-458 ---------- --------MV RAALSPP--F LLPLLLL--- SWAPRSEAAP 51 100 ENSP00000361562/1-498 DQDEIQRLPG LAKQPSFRQY SGYLKGSGSK HLHYWFVESQ KDPENSPVVL ENSBTAP00000039003/1-479 DQDEIRFLPG LAKQPSFRQY SGYLKGSGSK RLHYWFVESQ KDPKSSPVVL ENSTTRP00000015168/1-494 DQDEIQYLPG LTKQPSFRQY SGYLRGSGSK HLHYWFVESQ KDPKSSPVVL bmy_06255T0/1-522 DQDEIQYLPG LAKQPSFRQY SGYLRGSGSK HLHYWFVESQ KDPKSSPVVL BACU011375/1-458 DQDEIQYLPG LAKQPSFRQY SGYLRGSGSK HLHYWFVESQ KDPKSSPVVL 101 150 ENSP00000361562/1-498 WLNGGPGCSS LDGLLTEHGP FLVQPDGVTL EYNPYSWNLI ANVLYLESPA ENSBTAP00000039003/1-479 WLNGGPGCSS LDGLLTEHGP FLIQPDGVTL EYNPYSWNLI ANVLYLESPA ENSTTRP00000015168/1-494 WLNGGPGCSS LDGLLTEHGP FLIQPDGATL EYNPYSWNLI ANVLYLESPA bmy_06255T0/1-522 WLNGGPGCSS LDGLLTEHGP FLIQPDGATL EYNPYSWNLI ANVLYLESPA BACU011375/1-458 WLNGGPGCSS LDGLLTEHGP FLIQPDGATL EYNPYSWNLI ANVLYLESPA 151 200 ENSP00000361562/1-498 GVGFSYSDDK FYATNDTEVA QSNFEALQDF FRLFPEYKNN KLFLTGESYA ENSBTAP00000039003/1-479 GVGFSYSDDK SYATNDTEVA QSNFEALKDF FCLFPEYKGN ELFLTGESYA ENSTTRP00000015168/1-494 GVGFSYSDDK SYATNDTEVA QSNFEALKDF FRLFPEYKDN ELFLTGESYA bmy_06255T0/1-522 GVGFSYSDDK SYATNDTEVA QSNFEALKDF FGLFPEYKDN ELFLTGESYA BACU011375/1-458 GVGFSYSDDK SYATNDTEVA QSNFEALKDF FGLFPEYKDN ELFLTGESYA 201 250 ENSP00000361562/1-498 GIYIPTLAVL VMQDPSMNLQ GLAVGNGLSS YEQNDNSLVY FAYYHGLLGN ENSBTAP00000039003/1-479 GIYIPTLAVL VMQDPSMNLQ GLAVGNGLSS YEQNDNSLVY FAYYHGLLGN ENSTTRP00000015168/1-494 GIYIPTLAVL VMQDPSMNLQ GLAVGNGLSC YEQNDNSLVY FAYYHGLLGN bmy_06255T0/1-522 GVYIPTLAVL VMQDPSMNLQ GLAVGNGLSC YEQNDNSLVY FAYYHGLLGN BACU011375/1-458 GVYIPTLAVL VMQDPSMNLQ GLAVGNGLSC YEQNDNSLVY FAYYHGLLGN 251 300 ENSP00000361562/1-498 RLWSSLQTHC CSQNKCNFYD NKDLECVTNL QEVARIVGNS GLNIYNLYAP ENSBTAP00000039003/1-479 RLWSSLQTHC CSQNQCNFHD NKEPECVANL QEVSHIVASS GLNIYNLYAP ENSTTRP00000015168/1-494 RLWSSLQTHC CSQNKCNFYD NRDPQCVTNL QEVSHIVGSS GLNVYNLYAP bmy_06255T0/1-522 RLWSSLQTHC CSQNKCNFYN NKDPECVTNL QEVSHIVGSS GLNVYNLYAP BACU011375/1-458 RLWSSLQTHC CSQNKCNFYD NKDPECVTNL QEVSHIVGSS GLNVYNLYAP 301 350 ENSP00000361562/1-498 CAGGVPSHF- ---------- ---------- ------RYEK DTVVVQDLGN ENSBTAP00000039003/1-479 CAGGVPSHV- ---------- ---------- ------RHEK DTVVVQDLGN ENSTTRP00000015168/1-494 CAGGVPSHL- ---------- ---------- ------RYEK DTVVVQDLGN bmy_06255T0/1-522 CAGGVPSHPR WALPCVPWAN PSPIWRLRHS SPDLACRYEK DTVVVQDLGN BACU011375/1-458 CAGGVPSHP- ---------- ---------- ------RYEK DTVVIQDLGN 351 400 ENSP00000361562/1-498 IFTRLPLKRM WHQALLRSGD KVRMDPPCTN TTAASTYLNN PYVRKALNIP ENSBTAP00000039003/1-479 IFTRLPLKRV WHQTLLRSGE KVHLDPPCTN TTAASNYLND PHVRKALHIP ENSTTRP00000015168/1-494 IFTRLPPKQM WHQALLRSAG EVRLDPPCTN TTAASTYLNN PLVRKALHIP bmy_06255T0/1-522 IFTRLPPKRM WHQALLHSAG KVRLDPPCTN TTAASTYLNY PLVRKALHIP BACU011375/1-458 IFTHLPPKRM WRQALLHYAG KVRLDPPCTN TTAASTYLNY PLVRKALHIP 401 450 ENSP00000361562/1-498 EQLPQWDMCN FLVNLQYRRL YRSMNSQYLK LLSSQKYQIL LYNGDVDMAC ENSBTAP00000039003/1-479 EQLPRWDLCN FLVNIQYRRL YQSMCSQYLK LLSAQKYRIL LYNGDVDMAC ENSTTRP00000015168/1-494 EQLPRWDVCN FLVNIQYRRL YQTMCSQYLK LLAAQKYRIL LYNGDVDMAC bmy_06255T0/1-522 KQLPRWDVCN FLVNIQYRRL YQTMCSQYLK LLAAQKYRIL LYNGDVDMAC BACU011375/1-458 KQLPRWDVCN FLVNIQYRRL YQTMCSQYLK LLAAQKYRIL LYNGDVDMAC 451 500 ENSP00000361562/1-498 NFMGDEWFVD SLNQKMEVQR RPWLVKYGDS GEQIAGFVKE FSHIAFLTIK ENSBTAP00000039003/1-479 NFMGDEWFVD SLNQKMEVQR RPWLVDYGES GEQIAGFVKE FSHIAFLTIK ENSTTRP00000015168/1-494 NFMGDEWFVD SLNQKMEVQR RPWLVDYGDS GEQIAGFVKE FSHIAFLTIK bmy_06255T0/1-522 NFMGDEWFVD SLNQKMEVQR RPWLVDYGDG GEQIAGFVKE FSHIAFLTIK BACU011375/1-458 NFMGDEWFVD SLNQKMEVQR RPWLVDYGDG GEQIAGFVKE FSHIAFLTIK 501 550 ENSP00000361562/1-498 -GAGHMVPTD KPLAAFTMFS RFLNKQPY ENSBTAP00000039003/1-479 -GAGHMVPTD KPQAALTMFS RFLNRQPY ENSTTRP00000015168/1-494 -GAGHMVPTD KPQAALTMFS RFLNKQPY bmy_06255T0/1-522 -GAGHMVPTD KPQAALTMFS RFLNKQPY BACU011375/1-458 VGPG---PGE D--------- --------