KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:18 2014 Check: 00 .. Name: ENSP00000327386/1-283 Len: 285 Check: 4370 Weight: 1.00 Name: ENSBTAP00000039032/1-279 Len: 285 Check: 9478 Weight: 1.00 Name: bmy_06639T0/1-204 Len: 285 Check: 6406 Weight: 1.00 Name: BACU006543/1-281 Len: 285 Check: 7907 Weight: 1.00 // 1 50 ENSP00000327386/1-283 MGLGLRGWGR PLLTVATALM LPVKPPAGSW GAQIIGGHEV TPHSRPYMAS ENSBTAP00000039032/1-279 MGPGVGDWGR LLLTVTAVLT LPMRPP-GSW GAQIIGGHEV TPHSRPYMAS bmy_06639T0/1-204 MRPGEGSWDC LLLTVTAILM LPMRPP-GSW ASRIIGGHKV TPHSRPYMAS BACU006543/1-281 MRPGEGSWDC LLLTETSVLM LPMRPP-GSW ASRIIGGHKV TPHSRPYMAS 51 100 ENSP00000327386/1-283 VRFGGQHHCG GFLLRARWVV SAAHCFSHRD LRTGLVVLGA HVLSTAEPTQ ENSBTAP00000039032/1-279 VKFQGQHHCG GFLLRARWVV SAAHCFSGRD PGTGLVVLGA HALRTKEATQ bmy_06639T0/1-204 ---------- ---------- ---------- ---------- ---------- BACU006543/1-281 VRFQGQHHCG GFLLRTRWVV SAAHCFSDRD PRTGLVVLGA HDLHTAEATQ 101 150 ENSP00000327386/1-283 QVFGIDALTT HPDYHPMTHA NDICLLRLNG SAVLGPAVGL LRPPGRRARP ENSBTAP00000039032/1-279 QVFSISAVIT HPDYQPTTHT SDICLLQLNS SATLGPAVGL LGLPRRGARP bmy_06639T0/1-204 ---------- ---------- -------LNS SAILGPAVGL LGLPR---RP BACU006543/1-281 QVFSISAIFM HPDYHPATHT SDICLLQLNS SAILGPAVRL LGLPR---RP 151 200 ENSP00000327386/1-283 PTAGTRCRVA GWGFVSDFEE LPPGLMEAKV RVLDPDVCNS SWKGHLTLTM ENSBTAP00000039032/1-279 PRAGTRCKVA GWGSVSDFEE LPPGLMEAEV RVLELDACNS SWKGQLSPAM bmy_06639T0/1-204 PRAGARCKVA GWGSVSDFEE LPPVLMEADV RVLGLDVCNS SWRGQLSPAM BACU006543/1-281 PRAGARCKVA GWGSVSNFGE LPPVLMEAEV RVLGLDVCNS SWRGLLSPAM 201 250 ENSP00000327386/1-283 LCTRSGDSHR RGFCSADSGG PLVCRNRAHG LVSFSGLWCG DPKTPDVYTQ ENSBTAP00000039032/1-279 LCTHSGDRRR RGFCSADSGG PLVCRNRAYG LVSFSGLWCG DPKTPDVYTQ bmy_06639T0/1-204 LCTCSGDRQR RGFCSADSGG PLVCRNRAHG LVSFSGVWCG DPKTPDVYTL BACU006543/1-281 LCTHSGDRQR RGFCSADSGG PLVCRNRAHG LVSFSGLWCG DPKTPDVYTL 251 300 ENSP00000327386/1-283 VSAFVAWIWD VVRRS--SPQ PGPLPGTTRP PGEAA ENSBTAP00000039032/1-279 VSAFVTWIRD VIRHGQRGPQ ----PRTTGG RQAL- bmy_06639T0/1-204 VSAFVTWIWD VVRRGPHGPQ PSPPPRTTGG PAGVA BACU006543/1-281 VSAFVTWIWD VVRRGPHGPQ PSPPPRTTGS SAGVA