KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:24 2014 Check: 00 .. Name: ENSP00000369399/1-918 Len: 1162 Check: 2260 Weight: 1.00 Name: ENSTTRP00000008898/1-915 Len: 1162 Check: 1896 Weight: 1.00 Name: ENSBTAP00000039134/1-851 Len: 1162 Check: 8161 Weight: 1.00 Name: bmy_07671T0/1-1153 Len: 1162 Check: 1322 Weight: 1.00 Name: BACU016888/1-949 Len: 1162 Check: 553 Weight: 1.00 // 1 50 ENSP00000369399/1-918 ----MGVYGP QDRSES--EK RDVQRD---- -PPP----WH PRREGERPAR ENSTTRP00000008898/1-915 ----MGVDGT RDRRES--ES RNVLEE---- -PQPSYWAWQ RRLERGRPAR ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 MRTPPACTGP RRGGRE--GR GGFPTATG-- VPGLVE-GWG ACKWRGGVAG BACU016888/1-949 MRTPPACTGP RRENSSIMSQ NGYFEDAGEY ISGSPEHGDC MCQAAGGQVR 51 100 ENSP00000369399/1-918 ARSLPLAAAG QGF------- ---------- ---------- LRKTWIS--- ENSTTRP00000008898/1-915 VSSLQTPATS ESFL------ ---------- ---------- ---------- ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 SLAPRAPGSS QPGVQPPRKA SFYVLPDTFS PLALRGSLPT LRDPWASDGP BACU016888/1-949 CFSGIGGG-- ---------- ---------- -LSYKGSW-- VNHKWWT--- 101 150 ENSP00000369399/1-918 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008898/1-915 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 LRGRSSLSVA ALTPEGQPGV CTTIYLRALE PPRMGVASPP LHTLVILVLC BACU016888/1-949 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000369399/1-918 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008898/1-915 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 PSLQPLVLAL LTPPLPSGCR PGSRPGSPSA SCPPTPRVSE SGGAFLSCTR BACU016888/1-949 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000369399/1-918 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008898/1-915 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 PFLSLPSSHS EAQTARTIHP GPGAESADSS FPPPHPPPTP RHLPRGPTAP BACU016888/1-949 ---------- ------TVDP QDSEEEVSAG ---------P RALLRGSLL- 251 300 ENSP00000369399/1-918 ---------- ---------- ---------- ---------- ---EHENSPT ENSTTRP00000008898/1-915 ---------- ---------- ---------- ---------- ---FTGNSSI ENSBTAP00000039134/1-851 ---------- ---------- ---------- ---------- ---------- bmy_07671T0/1-1153 PPRRKVSGKG KKDSAGLVWG GQQMCPGDCP GLVHGAGDNS LACLAENSSI BACU016888/1-949 ---------- ---------- ---------- -VVVGA---- ---------- 301 350 ENSP00000369399/1-918 MSQNGYFEDS SYYKCDTDDT FEAREEILGD EAFDTANSSI VSGESIRFFV ENSTTRP00000008898/1-915 MSQNGYFEDA GYLKCDADDA SETREESLGD EAFDTVNSSI VSGESIRFFV ENSBTAP00000039134/1-851 MSQNGYFEDA GYLKCDTDDA SETREESLRD EAFDTVNSSI VSGESIRFFV bmy_07671T0/1-1153 MSQNGYFEDA GYLKYDADDA SETREESLGD EAFDTVNSSI VSGESIRFFV BACU016888/1-949 ---------P GYLKCDADDA SETREESLGD EAFDTVNSSI VSGESIRFFV 351 400 ENSP00000369399/1-918 NVNLEMQATN TENEATSGGC VLLHTSRKYL KLKNFKEEIR AHRDLDGFLA ENSTTRP00000008898/1-915 NVNLEVQPTQ S-ESESPGGY GLLHTSRKYL KLKNFEEEIR AHRDLDGFLA ENSBTAP00000039134/1-851 NVNLEVQPTQ SAESESPGGY GLLHTSRKYL KLKNFEEEIR AHRDLDGFLA bmy_07671T0/1-1153 NVNLEVQPTQ SAESESPGGY GLLHTSRKYL KLKNFEEEIR AHRDLDGFLA BACU016888/1-949 NVNLEVQPTQ SAEGESPGGY GLLHTSRKYL KLKNFEEEIR AHRDLDGFLA 401 450 ENSP00000369399/1-918 QASIVLNETA TSLDNVLRTM LRRFARDPDN NEPNCNLDLL MAMLFTDAGA ENSTTRP00000008898/1-915 RASIILNETA TSLDDVLRAM LCRLAQDSHN TEPDCNLDLL MAMLFTDAGA ENSBTAP00000039134/1-851 RARIILDETA TSLDDVLRAM LSRLAQDPYN TEPDCNLDLL TAMLFTDAGA bmy_07671T0/1-1153 RASIILNETA TSLDDVLRAM LCRLAQDSHN TEPDCNLDLL MAMLFTDAGA BACU016888/1-949 RASIILNETA TSLDDVLRAM LCRLAQDSHN TEPDCNLDPL MAMLFTDAGA 451 500 ENSP00000369399/1-918 PMRGK-VHLL SDTIQGVTAT VTGVRYQQSW LCIICTMKAL QKRHVCISRL ENSTTRP00000008898/1-915 PMEGK-VHLL SDTIQGVTAT VTGVQYQQSW LCIICTSKAL LKRHVCISRL ENSBTAP00000039134/1-851 PMEGK-VHLL SDTIQGVTAT VTGVQYQQSW ICILCTSKAL LRRHVCISRL bmy_07671T0/1-1153 PTEGKAVHLL SDTIQGVTAT VTGVQYQQSW LCIICTSKAL LKRHVCISRL BACU016888/1-949 PTEGK-VHLL SDTIQGVTAT VTGVQYQQSW LCIICTSKAL LKRHVCISRL 501 550 ENSP00000369399/1-918 VRPQNWGENS CEVRFVILVL APPKMKSTKT AMEVARTFAT MFSDIAFRQK ENSTTRP00000008898/1-915 VRPQNWGENS CEVRFVILVL APPKMKSTKT ATEVGRTFAT MFLDITFRQK ENSBTAP00000039134/1-851 DRPQNWGENS CEVRFVILVL APPKMKSTKT ATEVGRTFAT MMLDITFRQK bmy_07671T0/1-1153 VRPQNWGENS CEVRFVILVL APPKMKSTKT ATEVGRTFAT MFLDITFRQK BACU016888/1-949 VRPQNWGENS CEVRFVILVL APPKMKSTKT ATEVGRTFAT MFLDITFRQK 551 600 ENSP00000369399/1-918 LLETRTEEEF KEALVHQRQL LTMVSHGPVA PRTKERSTVS LPAHRHPEPP ENSTTRP00000008898/1-915 LLKTRTEEEF KEALVHQRQL LTIMSHCP-A -STKDYSMSS ICTHRPPQPL ENSBTAP00000039134/1-851 LLKTRTEEEF KEALVHQRQL LTVMSHCP-S ISM-DYSTSS ICIVRHPQPP bmy_07671T0/1-1153 LLKTRTEEEF KEALVHQRQL LTVMSHCP-S IRMKDYSMSS ICTHRPPQPP BACU016888/1-949 LLKTRTEEEF KEALVHQRQL LTVMSHCP-S ISMKDYSMSS VCTHRPPQPP 601 650 ENSP00000369399/1-918 KCKDFVPFGK GIREDIARRF PLYPLDFTDG IIGKNKAVGK YITTTLFLYF ENSTTRP00000008898/1-915 RHKDFLPIGR GIREDIARRF PVYPLDFTDG IIGKNKAVGK YITTTLFLYF ENSBTAP00000039134/1-851 RQKDFLPIGK GIQEDIARRF PVYPLDFTDG IIGKNKAVGK YITTTLFLYF bmy_07671T0/1-1153 RHKDFLPMGR GIREDIARRF PVYPLDFTDG IIGKNKAVGK YITTTLFLYF BACU016888/1-949 RHKDFLPMGR GIWEDIARRF PVYPLDFTDG IIGKNKAVGK YITTTLFLYF 651 700 ENSP00000369399/1-918 ACLLPTIAFG SLNDENTDGA IDVQKTIAGQ SIGGLLYALF SGQPLVILLT ENSTTRP00000008898/1-915 ACLLPTIAFG SLNDENTNGA IDVQKTIAGQ SIGGLLYALF SGQPLVVLLT ENSBTAP00000039134/1-851 ACLLPTIAFG SLNDENTNGA IDVQKTVAGQ GIGGLLYALF SGQPLVVLLT bmy_07671T0/1-1153 TCLLPTIAFG SLNDENTNGA IDVQKTIAGQ SIGGLLYALF SGQPLVVLLT BACU016888/1-949 ACLLPTIAFG SLNDENTNGA IDVQKTIAGQ SIGGLLYALF SGQPLVVLLT 701 750 ENSP00000369399/1-918 TAPLALYIQV IRVICDDYDL DFNSFYAWTG LWNSFFLALY AFFNLSLVMS ENSTTRP00000008898/1-915 TAPLALYIHV IRGICDDYNL DFSTFYAWTG LWNSFFLALY ALFNLSLVMS ENSBTAP00000039134/1-851 TAPLALYINV IRGICDDYNL DFSTFYAWTG LWNSFFLTLY ALFNLSLVMS bmy_07671T0/1-1153 TAPLALYIHV IRGICDDYDL DFSTFYAWTG LWNSFFLALY ALFNLSLVMG BACU016888/1-949 TAPLALYIHV IRGICDDYDL DFSTFYAWTG LWNSFFLTLY ALFNLSLVMS 751 800 ENSP00000369399/1-918 LFKRSTEEII ALFISITFVL DAVKGTVKIF WKYYYGHYLD DYHTKRTSSL ENSTTRP00000008898/1-915 LFKRSTEEII ALFISITFVL DAVKGMVKIF QKYYCGHNHG NYYEDR-SSP ENSBTAP00000039134/1-851 LFKRSTEEII ALFISITFVL DAIKGTVKIF QKYYYGHDAA -LFKDE-PSL bmy_07671T0/1-1153 LFKRSTEEII ALFISITFVL DAVKGMVKIF QKYYCGHNPG NYYEDR-SSP BACU016888/1-949 LFKRSTEEII ALFISITFVL DAVKGMVKIF QKYYCGHNPG NYYEDR-SSP 801 850 ENSP00000369399/1-918 VSLSGLGASL NASLHTALNA SFLASPTELP SATHSG---- -QATAVLSLL ENSTTRP00000008898/1-915 VSLLGLSPSL NSSLHAALNT SLLAGPPELT SVGSQGPEAL ARDTAVLSLL ENSBTAP00000039134/1-851 VSLLG----L NSSLHTALNT SFLTSPPELT STGSQDPEPL ARDTAVLSLL bmy_07671T0/1-1153 VSLLGLSPSL NSSLHAALNT SLLAGPPELP SVGSQGPEPL ARDTAVLSLL BACU016888/1-949 VSLLGLSPSL NSSLHAALNT SLLAGPPELS SVGSQGPEPL ARDTAVLSLL 851 900 ENSP00000369399/1-918 IMLGTLWLGY TLYQFKKSPY LHPCVREILS DCALPIAVLA FSLISSHGFR ENSTTRP00000008898/1-915 IMLGTLWLGY TLYQFKKSPY LHPYMREILS DCALPISVLT FSLISSYGFQ ENSBTAP00000039134/1-851 IMLGTLWLSY TLYQLKKSPY LNPYVRELLS DCALPISVLT FSLISSYGFQ bmy_07671T0/1-1153 IMLGTLWLSY TLYQFKKSPY LHPYMREILS DCALPISVLT FSLISSYGFQ BACU016888/1-949 IMLGTLWLSY TLYQFKKSPY LHPYMREILS DCALPISVLT FSLISSYGFQ 901 950 ENSP00000369399/1-918 EIEMSKFRYN PSESPFAMAQ IQSLSLRAVS GAMGLGFLLS MLFFIEQNLV ENSTTRP00000008898/1-915 EIKMSKFRYN PSKSLFEMAE MHSLSLVAVS GAMGLGFLLS MLFFIEQNLV ENSBTAP00000039134/1-851 EIKMVKFRYS PSNSLFEIAE MHSLSLVAIS SAMGLGFLLS MLFFIEQNLV bmy_07671T0/1-1153 EIKMGKFRYN PSKSLFEMAE MHSLSLVAVS GAMGLGFLLS MLFFIEQNLV BACU016888/1-949 EIKMGKFRYN PSKSLFEMAE MHSLSLVAVS GAMGLGFLLS MLFFIEQNLV 951 1000 ENSP00000369399/1-918 AALVNAPENR LVKGTAYHWD LLLLAIINTG LSLFGLPWIH AAYPHSPLHV ENSTTRP00000008898/1-915 AALANAPENR LVKGTAYHWD LLLIAIINTG LSLFGLPWIH AAYPHSPLHV ENSBTAP00000039134/1-851 AALANAPQNR LVKGTAYHWD LLLIAIINTG LSLFGLPWIH AAYPHSLLHV bmy_07671T0/1-1153 AALANAPENR LVKGTAYHWD LLLVAIINTG LSLFGLPWIH AAYPHSPLHV BACU016888/1-949 AALANAPENR LVKGTAYHWD LLLVAIINTG LSLFGLPWIH AAYPHSPLHV 1001 1050 ENSP00000369399/1-918 RALALVEERV ENGHIYDTIV NVKETRLTSL GASVLVGLSL LLLPVPLQWI ENSTTRP00000008898/1-915 RALALVEERV ENGHIYETIV SVRETRLTSL GASILVGFSL LLLPFPLQWI ENSBTAP00000039134/1-851 RALALVEEHV ENGHIYETIV NVKETRLTSL GASILVGFSL LLLPFPLQWI bmy_07671T0/1-1153 RALALVEERV ENGHIYETIV SVKETRLTTL GASILVGFSL LLLPFPLQWI BACU016888/1-949 RALALVEERV ENGHIYETIV SVKETRLTTL GASILVGFSL LLLPFPLQWI 1051 1100 ENSP00000369399/1-918 PKPVLYGLFL YIALTSLDGN QLVQRVALLL KEQTAYPPTH YIRRVPQRKI ENSTTRP00000008898/1-915 PKPVLYGLFL YITLTSIDCK QLFARMALLL -EQXXXXXXX XXXXXXXXXX ENSBTAP00000039134/1-851 PKPVLYGLFL YLALTSIDGN QLFQRMVLLL KDQTSYPPTH YIRRVPQRKI bmy_07671T0/1-1153 PKPVLYGLFL YIALTSIDGN QLFARVVLLL KDQTSYPPTH YIRRVPQRKI BACU016888/1-949 PKPVLYGLFL YIALTSIDGN QLFARMVLLL KDQTSYPPTH YIRRVPQRKI 1101 1150 ENSP00000369399/1-918 HYFTGLQVLQ LLLLCAFGMS SLPYMKMIFP LIMIAMIPIR YILLPRIIEA ENSTTRP00000008898/1-915 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPQ-IEA ENSBTAP00000039134/1-851 HYFTGLQVLQ LLLLCAFGMS PLLYMKMVFP LIMIAMIPIR YNVLPQIIEA bmy_07671T0/1-1153 HYFTGLQVLQ LLLLCAFGMS TLPYMKMIFP LIMIAMIPIR YNLLPQIIEA BACU016888/1-949 HYFTGLQVLQ LLLLCAFGMS TLPYMKMIFP LIMIAMIPIR YNLLPQIIEA 1151 1200 ENSP00000369399/1-918 KYLDVMDAEH RP ENSTTRP00000008898/1-915 KYLDAMDAEH RS ENSBTAP00000039134/1-851 KYLDAMDAEH -- bmy_07671T0/1-1153 KYLDAMDAEH -- BACU016888/1-949 KYLDAMDAEH --