KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:25 2014 Check: 00 .. Name: BACU006768/1-683 Len: 758 Check: 6916 Weight: 1.00 Name: ENSTTRP00000000501/1-650 Len: 758 Check: 3711 Weight: 1.00 Name: bmy_16009T0/1-639 Len: 758 Check: 7867 Weight: 1.00 Name: ENSP00000368637/1-650 Len: 758 Check: 8496 Weight: 1.00 Name: ENSBTAP00000039151/1-649 Len: 758 Check: 6111 Weight: 1.00 // 1 50 BACU006768/1-683 ---MNSAITS CEHPEPLRGD G--------- ---------- VLNSHEGGQG ENSTTRP00000000501/1-650 ---MMGIGKN TTSKSMEAGS STEGKYEDEA KHPAFFTLPV VINGGATSSG bmy_16009T0/1-639 MGGSEGGLKP LTLLQMLTGF GKQFFSDRLL QRPA----QV VINGGATSSG ENSP00000368637/1-650 ---MMGIGKN TTSKSMEAGS STEGKYEDEA KHPAFFTLPV VINGGATSSG ENSBTAP00000039151/1-649 ---MMGIGKN TTSKSMEAGS SAEGKYEDEA KHPSFFTLPV VINGGATSSG 51 100 BACU006768/1-683 RKKDGQP--- ------RGLS S--------- ---------S HLAYSILDIP ENSTTRP00000000501/1-650 EQDNEDTELM AIYTTENGIA EKSSLAETLD STGSLDPQRS DMIYTIEDVP bmy_16009T0/1-639 EQDNEDTELM AIYTTENGIA EKSSLAETLD STGSLDPQRS DMIYTIEDVP ENSP00000368637/1-650 EQDNEDTELM AIYTTENGIA EKSSLAETLD STGSLDPQRS DMIYTIEDVP ENSBTAP00000039151/1-649 EQDNEDTELM AIYTTENGIA EKSSLAETLD STGSLDPQRS DMIYTIEDVP 101 150 BACU006768/1-683 PWYLCIFLGV QHFLTALGGL VAVPLILAKD LCLQHDPLTQ SYLISTIFFV ENSTTRP00000000501/1-650 PWYLCIFLGL QHYLTCFSGT IAVPFLLADA MCVGFDQWAT SQLIGTIFFC bmy_16009T0/1-639 PWYLCIFLGL QHYLTCFSGT IAVPFLLADA MCVGYDQWAT SQLIGTIFFC ENSP00000368637/1-650 PWYLCIFLGL QHYLTCFSGT IAVPFLLADA MCVGYDQWAT SQLIGTIFFC ENSBTAP00000039151/1-649 PWYLCIFLGL QHYLTCFSGT IAVPFLLADA MCVGYDQWAT SQLIGTIFFC 151 200 BACU006768/1-683 SGICTLLQVF LGVRLPILQG GTFAFLAPSL AMLSLPTWKC PTWTLNASLV ENSTTRP00000000501/1-650 VGITTLLQTT FGCRLPLFQA SAFAFLAPAR AILSLDKWKC N--TTDVLVA bmy_16009T0/1-639 VGITTLLQTT FGCRLPLFQA SAFAFLAPAR AILSLDKWKC N--TTDVSVA ENSP00000368637/1-650 VGITTLLQTT FGCRLPLFQA SAFAFLAPAR AILSLDKWKC N--TTDVSVA ENSBTAP00000039151/1-649 VGITTLLQTT FGCRLPLFQA SAFAFLAPAR AILSLDKWKC N--TTDVSVA 201 250 BACU006768/1-683 NTSSPEFTEE --WQKRIREL QGAIMVASCV QMLVGFSGLI GFLMRFIGPL ENSTTRP00000000501/1-650 NGTTELLHTE HIWYPRIREI QGAIIMSSLI EVVIGLLGLP GALLKYIGPL bmy_16009T0/1-639 NGTTELLHTE HIWYPRIREI QGAIIMSSLI EVVIGLLGLP GALLKYIGPL ENSP00000368637/1-650 NGTAELLHTE HIWYPRIREI QGAIIMSSLI EVVIGLLGLP GALLKYIGPL ENSBTAP00000039151/1-649 NGTTALLHTE HIWYPRIREI QGAIIMSSLI EVVIGLLGLP GALLKYIGPL 251 300 BACU006768/1-683 TIAPTISLVA LPLFDSAGND AGIHWGIAAM ---------- ---------- ENSTTRP00000000501/1-650 TITPTVALIG LSGFQAAGER AGKHWGIAML ---------- ---------- bmy_16009T0/1-639 TITPTVALIG LSGFQAAGER AGKHWGIAML MHCLHNIDIT AFNLDHFLSL ENSP00000368637/1-650 TITPTVALIG LSGFQAAGER AGKHWGIAML ---------- ---------- ENSBTAP00000039151/1-649 TITPTVALIG LSGFQAAGER AGKHWGIAML ---------- ---------- 301 350 BACU006768/1-683 --TIFLIVLF SQYLKNIAVP VPVYGREKKC HTSKFYLFQV FPVLLALCIS ENSTTRP00000000501/1-650 --TIFLVLLF SQYARNVKFP LPIYKSKKGW TAYKLQLFKM FPXXXXXXXX bmy_16009T0/1-639 LRTIFLVLLF SQYARNVKFP LPIYKSKKGW TAYKLQLFKM FPIILAILVS ENSP00000368637/1-650 --TIFLVLLF SQYARNVKFP LPIYKSKKGW TAYKLQLFKM FPIILAILVS ENSBTAP00000039151/1-649 --TIFLVLLF SQYARNVKFP LPIYKSKKGW TAYKLQLFKM FPIILAILVS 351 400 BACU006768/1-683 WLLCFVLTVT NALPSAPAAY GYLARTDTKG DVLSQAPWFR FPYPGQWGLP ENSTTRP00000000501/1-650 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXQWGLP bmy_16009T0/1-639 WLLCFIFTVT DVFPPDSTKY GFYARTDARQ GVLLVAPWFK VPYPFQWGLP ENSP00000368637/1-650 WLLCFIFTVT DVFPPDSTKY GFYARTDARQ GVLLVAPWFK VPYPFQWGLP ENSBTAP00000039151/1-649 WLLCFIFTVT DVFPPDSTKY GFYARTDARQ GVLLVAPWFK VPYPFQWGLP 401 450 BACU006768/1-683 TISLAGVFGI IAGVISSMVE SVGDYYACAR LVGAPPPPKH AINRGIGIEG ENSTTRP00000000501/1-650 TISAAGVIGM LSAVVASIIE SIGDYYACAR LSCAPPPPIH AINRGIFVEG bmy_16009T0/1-639 TISAAGVIGM LSAVVASIIE SIGDYYACAR LSCAPPPPIH AINRGIFVEG ENSP00000368637/1-650 TVSAAGVIGM LSAVVASIIE SIGDYYACAR LSCAPPPPIH AINRGIFVEG ENSBTAP00000039151/1-649 TVSAAGVIGM LSAVVASIIE SIGDYYACAR LSCAPSPPIH AINRGIFVEG 451 500 BACU006768/1-683 LGCLLAGAWG TGNGTTSYSE NVGALGITRV GSRMVIVAAG CVLLLMGVFG ENSTTRP00000000501/1-650 LSCVLDGIFG TGNGSTSSSP NIGVLGITKV GSRRVIQYGA ALMLALGMIG bmy_16009T0/1-639 LSCVLDGIFG TGNGSTSSSP NIGVLGITKV GSRRVIQYGA ALMLALGMIG ENSP00000368637/1-650 LSCVLDGIFG TGNGSTSSSP NIGVLGITKV GSRRVIQCGA ALMLALGMIG ENSBTAP00000039151/1-649 LSCVLDGIFG TGNGSTSSSP NIGVLGITKV GSRRVIQYGA ALMLALGMIG 501 550 BACU006768/1-683 KIGAAFATIP TPVIGGMFLV MFGVITAVGI SNLQYVDMNS SRNLFIFGFS ENSTTRP00000000501/1-650 KFSALFASLP DPVLGALFCT LFGMITAVGL SNLQFIDLNS SRNLFVLGFS bmy_16009T0/1-639 KFSALFASLP DPVLGALFCT LFGMITAVGL SNLQFIDLNS SRNLFVLGFS ENSP00000368637/1-650 KFSALFASLP DPVLGALFCT LFGMITAVGL SNLQFIDLNS SRNLFVLGFS ENSBTAP00000039151/1-649 KFSALFASLP DPVLGALFCT LFGMITAVGL SNLQFIDLNS SRNLFVLGFS 551 600 BACU006768/1-683 IYCGLAVPNW VNKNPERLHT GILQLDQVIQ VLLTTGMFVG GFLGFLLDNT ENSTTRP00000000501/1-650 IFFGLVLPSY LRQNP--LVT GITGIDQVLN VLLTTAMFVG GCVAFILDNT bmy_16009T0/1-639 IFFGLVLPSY LRQNP--LVT ---------- ---------- ---------- ENSP00000368637/1-650 IFFGLVLPSY LRQNP--LVT GITGIDQVLN VLLTTAMFVG GCVAFILDNT ENSBTAP00000039151/1-649 IFFGLVLPSY LRQNP--LVT GITGIDQVLN VLLTTAMFVG GCVAFILDNT 601 650 BACU006768/1-683 IPGRLEERGL LAWNQIQEES EETTKLSEVY SLPWGMGT-- RFCASSCTRC ENSTTRP00000000501/1-650 IPGTPEERGI RKWKKGVGKG SKSLDGMESY DLPFGMNIIK KY------RC bmy_16009T0/1-639 --GTPEERGI RKWKKGVGKG SKSLDGMESY DLPFGMNTIK KY------RC ENSP00000368637/1-650 IPGTPEERGI RKWKKGVGKG NKSLDGMESY NLPFGMNIIK KY------RC ENSBTAP00000039151/1-649 IPGTPEERGI RKWKKGVGKG SKSLDGMESY DLPFGMNIIK KY------RC 651 700 BACU006768/1-683 LPFWPRLARG GTGQPTPKRP ARLRQGQPGL PAFKPGDCPP SFIHSCSQPF ENSTTRP00000000501/1-650 FSYLP----- ---------- ---------- -------ISP TFAG-----Y bmy_16009T0/1-639 FSYLP----- ---------- ---------- -------ISP TFAG-----Y ENSP00000368637/1-650 FSYLP----- ---------- ---------- -------ISP TFVG-----Y ENSBTAP00000039151/1-649 FSYLP----- ---------- ---------- -------ISP TFAG-----Y 701 750 BACU006768/1-683 YITDLHRQTS PCTSTLSSHR RREGLVPAKH RCGFRTISLA PLPTSSLSPR ENSTTRP00000000501/1-650 TWKGLRKSTN SRSSDEDSQA TV-------- ---------- ---------- bmy_16009T0/1-639 TWKGLRKSAN SRSSDEDSQA TV-------- ---------- ---------- ENSP00000368637/1-650 TWKGLRKSDN SRSSDEDSQA TG-------- ---------- ---------- ENSBTAP00000039151/1-649 TWKGLGKSAS SRSSDEDSQA T--------- ---------- ---------- 751 800 BACU006768/1-683 HVEILELP ENSTTRP00000000501/1-650 -------- bmy_16009T0/1-639 -------- ENSP00000368637/1-650 -------- ENSBTAP00000039151/1-649 --------