KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:26 2014 Check: 00 .. Name: bmy_12248T0/1-440 Len: 524 Check: 1549 Weight: 1.00 Name: ENSTTRP00000000099/1-502 Len: 524 Check: 7308 Weight: 1.00 Name: ENSP00000381498/1-504 Len: 524 Check: 7911 Weight: 1.00 Name: ENSBTAP00000039238/1-476 Len: 524 Check: 5313 Weight: 1.00 // 1 50 bmy_12248T0/1-440 AEPR------ -----VGAAA AAAAAGGPPA GHRRPRPPED GGQGSPAAGG ENSTTRP00000000099/1-502 MTPSPALVLP L-LLLLGALP PATAARGPPR MADKVVPRQV ARLGRTV--- ENSP00000381498/1-504 MTPSPLLLLL LPPLLLGAFP PAAAARGPPK MADKVVPRQV ARLGRTV--- ENSBTAP00000039238/1-476 ---------- ---------- ------GPPR MADKVVPRQV ARLGRTV--- 51 100 bmy_12248T0/1-440 PAGPHRAAAV PRGGGPAAAD HVDQGRP-DD PW-RLEPLPR AAPGAEGEGG ENSTTRP00000000099/1-502 -----RLQCP VEGDPPPLTM WTKDGRTIHG GWSRFRVLPQ GLKVKEVERE ENSP00000381498/1-504 -----RLQCP VEGDPPPLTM WTKDGRTIHS GWSRFRVLPQ GLKVKQVERE ENSBTAP00000039238/1-476 -----RLQCP VEGDPPPLTM WTKDGRTIHG GWSRFRVLPQ GLKVKEVEPE 101 150 bmy_12248T0/1-440 GAGGCWRLRV QGYERLRQPE RQLHPHRDGS VLAVLDDTSP GRESPGHDGS ENSTTRP00000000099/1-502 DAGAYVCKAT NGFGSLSV-- --------NY TLIVMDDTSP GRESPGHDGS ENSP00000381498/1-504 DAGVYVCKAT NGFGSLSV-- --------NY TLVVLDDISP GKESLGPDSS ENSBTAP00000039238/1-476 DAGAYVCKAT NGFGSLSV-- --------NY TLIVMDDTSP GRESPGHDSS 151 200 bmy_12248T0/1-440 SGGQEDPASK QWARPRFTQP SKMRRRVIAR PVGSSVRLKC VASGHPRPDI ENSTTRP00000000099/1-502 SWGQEDPASK QWARPRFTQP SKMRRRVIAR PVGSSVRLKC VASGHPRPDI ENSP00000381498/1-504 SGGQEDPASQ QWARPRFTQP SKMRRRVIAR PVGSSVRLKC VASGHPRPDI ENSBTAP00000039238/1-476 SGGQEDPASK QWARPRFTQP SKMRRRVIAR PVGSSVRLKC VASGHPRPDI 201 250 bmy_12248T0/1-440 MWMKDDQALT RPEAGEHRKK KWTLSLKNLR PEDSGKYTCR VSNRAGAINA ENSTTRP00000000099/1-502 MWMKDDQALT RPEAGEHRKK KWTLSLKNLR PEDSGKYTCR VSNRAGAINA ENSP00000381498/1-504 TWMKDDQALT RPEAAEPRKK KWTLSLKNLR PEDSGKYTCR VSNRAGAINA ENSBTAP00000039238/1-476 MWMKDDQALT RPEAGEHRKK KWTLSLKNLR PEDSGKYTCR VSNRAGAINA 251 300 bmy_12248T0/1-440 TYKVDVIQRT RSKPVLTGTH PVNTTVDFGG TTSFQCKVRS DVKPVIQWLK ENSTTRP00000000099/1-502 TYKVDVIQRT RSKPVLTGTH PVNTTVDFGG TTSFQCKVRS DVKPVIQWLK ENSP00000381498/1-504 TYKVDVIQRT RSKPVLTGTH PVNTTVDFGG TTSFQCKVRS DVKPVIQWLK ENSBTAP00000039238/1-476 TYKVDVIQRT RSKPVLTGTH PVNTTVDFGG TTSFQCKVRS DVKPVIQWLK 301 350 bmy_12248T0/1-440 RVEYGAEGRY NSTIDVGGQK FVVLPTGDVW SRPDGSYLNK LLITRARQDD ENSTTRP00000000099/1-502 RVEYGAEGRY NSTIDVGGQK FVVLPTGDVW SRPDGSYLNK LLITRAXXXX ENSP00000381498/1-504 RVEYGAEGRH NSTIDVGGQK FVVLPTGDVW SRPDGSYLNK LLITRARQDD ENSBTAP00000039238/1-476 RVEYGAEGRY NSTIDVGGQK FVVLPTGDVW SRPDGSYLNK LLITRARQDD 351 400 bmy_12248T0/1-440 AGMYICLGAN TMGYSFRSAF LTVL------ ---------- -----PVLDH ENSTTRP00000000099/1-502 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000381498/1-504 AGMYICLGAN TMGYSFRSAF LTVLPDPKPP GPPVASSSSA TSLPWPVVIG ENSBTAP00000039238/1-476 AGMYICLGAN TMGYSFRSAF LTVLPDPKPP GPPVAPSSST TSLPWPVVIG 401 450 bmy_12248T0/1-440 QPA------- -----VASGH RHP---SRRR VHPGHRAPVA LP---GQEEA ENSTTRP00000000099/1-502 IPAGAV-ILG TVLLWLCQAK KKPCAPAPAP PVPAHRPPAT ARDRGGDKDL ENSP00000381498/1-504 IPAGAVFILG TLLLWLCQAQ KKPCTPAPAP PLPGHRPPGT ARDRSGDKDL ENSBTAP00000039238/1-476 IPAGAVFIVG TVVLWLCQAK KKPC--APAP PAPAHRPPAT ARDRGGDKDL 451 500 bmy_12248T0/1-440 MRPRARPSGA CTSPARD-GP R--PRRGQGP AGTPHPRCRP RC-------- ENSTTRP00000000099/1-502 PAPPTLGAGP GVGLCEELGP PAAPQHLLGP GSAAGPKLYP KLYTD--THT ENSP00000381498/1-504 PSLAALSAGP GVGLCEEHGS PAAPQHLLGP GPVAGPKLYP KLYTDIHTHT ENSBTAP00000039238/1-476 PAPATVGSGP GVGLCEELGP PAAPQHLLGP GSATGPKLYP KLYTD--THT 501 550 bmy_12248T0/1-440 ---------- -GAV------ ---- ENSTTRP00000000099/1-502 HTHSHTHSHV EGKVHQHQHI HYQC ENSP00000381498/1-504 HTHSHTHSHV EGKV--HQHI HYQC ENSBTAP00000039238/1-476 HTHSHTHSHV EGKVHQHQHT HYHC