KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:26 2014 Check: 00 .. Name: ENSBTAP00000039256/1-332 Len: 339 Check: 9293 Weight: 1.00 Name: ENSTTRP00000002209/1-334 Len: 339 Check: 5123 Weight: 1.00 Name: ENSP00000433847/1-334 Len: 339 Check: 5293 Weight: 1.00 Name: bmy_22672T0/1-282 Len: 339 Check: 4008 Weight: 1.00 Name: BACU011217/1-223 Len: 339 Check: 320 Weight: 1.00 // 1 50 ENSBTAP00000039256/1-332 MPKRRDVLAV VLIVLPWTLL VTVWHQSTVA PLLAARKDDS GDPRREAPPG ENSTTRP00000002209/1-334 MPKRRDILAI FLIVLPWTLL VTVWHQSTIA PLLTAHKDDG SDPRREAPPG ENSP00000433847/1-334 MPKRRDILAI VLIVLPWTLL ITVWHQSTLA PLLAVHKDEG SDPRRETPPG bmy_22672T0/1-282 ---------- ---------- ---------- ---------- ---------- BACU011217/1-223 MPKRRDILAI VLIVLPWTLL VTVWHQSTIA PLLAAHKDDG SDPRREVPPG 51 100 ENSBTAP00000039256/1-332 TDPREYCMSD RDIVEVVRTE YVYTRPPPWS DTLPTIHVVT PTYSRPVQKA ENSTTRP00000002209/1-334 VDPREYCMSD RDIVEVVRTE YVYTRPPPWS DTLPTIHVVT PTYSRPVQKA ENSP00000433847/1-334 ADPREYCTSD RDIVEVVRTE YVYTRPPPWS DTLPTIHVVT PTYSRPVQKA bmy_22672T0/1-282 -------MSD RDIVEVVRTE YVYTRPPPWS DTLPTIHVVT PTYSRPVQKA BACU011217/1-223 ADPREYCMSD RDIVEVVRTE YVYTRPPPWS DTLPTIHVVT PTYSRP---- 101 150 ENSBTAP00000039256/1-332 ELTRLANTLL HVPNLHWLVV EDAPRRTPLT ARLLRDTGLN YTHLHVETPR ENSTTRP00000002209/1-334 ELTRLANTLL HVPNLHWLVV EDAPRRTPLT ARLLRDTGLN YTHLHVETPR ENSP00000433847/1-334 ELTRMANTLL HVPNLHWLVV EDAPRRTPLT ARLLRDTGLN YTHLHVETPR bmy_22672T0/1-282 ELTRLANTLL HVPNLHWLVV EDAPRRTPLT ARLLRDTGLN YTHLHVETPR BACU011217/1-223 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000039256/1-332 NYKLRGPQLE MR--PSTSRG QIPLPWLGSN FPRNSSQPGV VYFADDDNTY ENSTTRP00000002209/1-334 NYKLRGDARD PRIPRGTMQR NLALRWLRET FPRNSSQPGV VYFADDDNTY ENSP00000433847/1-334 NYKLRGDARD PRIPRGTMQR NLALRWLRET FPRNSSQPGV VYFADDDNTY bmy_22672T0/1-282 NYKLRGDARD PRIPRGTMQR NLALRWLRET FPRNSSQPGV VYFADDDNTY BACU011217/1-223 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000039256/1-332 SLELFEE--- --MRSTRRVS VWPVAFVGGL RYEAPRVNGA GKVVGWKTVF ENSTTRP00000002209/1-334 SLEVFEE--- --MRSTRRVS VWPVAFVGGL RYEAPRVNGA GKMVGWKTVF ENSP00000433847/1-334 SLELFEE--- --MRSTRRVS VWPVAFVGGL RYEAPRVNGA GKVVGWKTVF bmy_22672T0/1-282 SLELFEEVRS VEMRSTRRVS VWPVAFVGGL RYEAPRVNGA GKVVGWKTVF BACU011217/1-223 ---------- --MRSTRRVS VWPVAFVGGL RYEAPRVNGA GKVVGWKTVF 251 300 ENSBTAP00000039256/1-332 DPHRPFAIDM AGFAVNLRLI LQRSQAYFKL RGVKGGYQES SLLRELVTLS ENSTTRP00000002209/1-334 DPHRPCAIDM AGFAVNLRLI LQRSQAYFKL RGVKGGYQES SLLRELVTLG ENSP00000433847/1-334 DPHRPFAIDM AGFAVNLRLI LQRSQAYFKL RGVKGGYQES SLLRELVTLN bmy_22672T0/1-282 DPHRPFAIDM AGFAVNLRLI LQRSQAYFKL RGVKGGYQES SLLRELVTLS BACU011217/1-223 DPHRPFAIDM AGFAVNLRLI LQRSQAYFKL RGVKGGYQES SLLRELVTLS 301 350 ENSBTAP00000039256/1-332 DLEPKAANCT KILVWHTRTE KPVLVNEGKK GFTDPTVEI ENSTTRP00000002209/1-334 DLEPKAANCT KILVWHTRTE KPVLVNEGKK GFTDPMVEI ENSP00000433847/1-334 DLEPKAANCT KILVWHTRTE KPVLVNEGKK GFTDPSVEI bmy_22672T0/1-282 DLEPKAANCT KILVWHTRTE KPVLVNEGKK GFTDPMVEI BACU011217/1-223 DLEPKAANCT KILVWHTRTE KPVLVNEGKK GFTDPMVEI